Wall clock time and date at job start Tue Mar 31 2020 20:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 5 5 N 1.46895 * 109.47819 * 185.00126 * 4 2 1 6 6 C 1.46890 * 111.00488 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47580 * 179.97438 * 6 5 4 8 8 O 1.21300 * 119.99236 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00353 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99863 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00455 * 0.02562 * 10 9 7 12 12 C 1.38957 * 119.99963 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00068 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46851 * 60.00157 * 14 12 10 16 16 H 1.48500 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47314 * 300.00503 * 14 12 10 18 18 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 19 19 C 1.34773 * 119.99969 * 274.72265 * 18 2 1 20 20 O 1.21281 * 120.00220 * 0.02562 * 19 18 2 21 21 C 1.50706 * 120.00080 * 180.02562 * 19 18 2 22 22 H 1.09004 * 109.46762 * 300.00389 * 21 19 18 23 23 C 1.53004 * 109.46763 * 60.00061 * 21 19 18 24 24 C 1.50690 * 109.47185 * 180.02562 * 21 19 18 25 25 C 1.39871 * 126.03936 * 299.69081 * 24 21 19 26 26 N 1.30843 * 108.20018 * 179.82090 * 25 24 21 27 27 N 1.40081 * 108.20536 * 0.43626 * 26 25 24 28 28 C 1.46507 * 126.03805 * 179.73870 * 27 26 25 29 29 C 1.34949 * 107.92535 * 359.72104 * 27 26 25 30 30 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 33 33 H 1.09002 * 109.47378 * 305.00625 * 4 2 1 34 34 H 1.09004 * 109.46895 * 64.99844 * 4 2 1 35 35 H 1.00909 * 110.99812 * 56.04187 * 5 4 2 36 36 H 1.08996 * 109.47333 * 299.99866 * 6 5 4 37 37 H 1.08997 * 109.47417 * 60.00044 * 6 5 4 38 38 H 0.96998 * 120.00558 * 0.02562 * 9 7 6 39 39 H 0.97003 * 119.99417 * 179.97438 * 13 12 10 40 40 H 0.97005 * 119.99811 * 95.00317 * 18 2 1 41 41 H 1.08995 * 109.46910 * 60.00609 * 23 21 19 42 42 H 1.09002 * 109.46848 * 180.02562 * 23 21 19 43 43 H 1.09000 * 109.47019 * 299.99778 * 23 21 19 44 44 H 1.08000 * 125.90182 * 0.02562 * 25 24 21 45 45 H 1.08995 * 109.46713 * 269.98010 * 28 27 26 46 46 H 1.09000 * 109.46687 * 29.98201 * 28 27 26 47 47 H 1.09001 * 109.47009 * 149.97840 * 28 27 26 48 48 H 1.08004 * 126.12712 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5149 -2.3765 7 6 5.5318 -1.6034 -2.2811 8 8 6.1067 -1.1392 -1.3191 9 7 6.2356 -2.1991 -3.2640 10 6 7.6014 -2.2801 -3.1768 11 1 8.1134 -1.8668 -2.3204 12 6 8.3270 -2.8948 -4.1900 13 7 7.7041 -3.3981 -5.2319 14 14 10.1881 -3.0045 -4.0716 15 1 10.5625 -3.7630 -2.8511 16 1 10.7202 -3.7007 -5.2705 17 1 10.7610 -1.6363 -3.9993 18 7 2.0182 -0.6906 1.1963 19 6 2.1522 -0.0169 2.3558 20 8 1.8681 1.1610 2.4091 21 6 2.6550 -0.7271 3.5862 22 1 1.9800 -1.5464 3.8341 23 6 4.0550 -1.2830 3.3178 24 6 2.7114 0.2427 4.7382 25 6 3.4744 1.4138 4.7915 26 7 3.2585 1.9900 5.9462 27 7 2.3578 1.1975 6.6692 28 6 1.8525 1.4768 8.0157 29 6 2.0373 0.1315 5.9063 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.7996 -1.2884 -0.3431 36 1 3.6097 -2.5189 -2.4307 37 1 3.7560 -0.9571 -3.2718 38 1 5.7759 -2.5706 -4.0330 39 1 8.2107 -3.8269 -5.9393 40 1 2.2489 -1.6318 1.1527 41 1 4.7298 -0.4638 3.0700 42 1 4.4184 -1.7971 4.2076 43 1 4.0137 -1.9846 2.4847 44 1 4.1263 1.7808 4.0126 45 1 2.5129 1.0209 8.7533 46 1 1.8190 2.5546 8.1748 47 1 0.8497 1.0627 8.1206 48 1 1.3639 -0.6675 6.1792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321770809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:08 Heat of formation + Delta-G solvation = 3.824223 kcal Electronic energy + Delta-G solvation = -28772.727877 eV Core-core repulsion = 24671.421246 eV Total energy + Delta-G solvation = -4101.306631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42358 -39.79172 -38.29906 -36.72533 -34.55099 -34.23490 -33.61449 -32.79582 -31.23189 -30.85759 -29.41932 -27.58741 -26.67009 -25.09077 -24.50564 -23.24930 -21.82653 -21.22652 -20.56509 -19.83659 -19.22691 -17.91208 -17.39154 -16.77672 -16.28320 -15.97842 -15.56697 -15.34160 -15.11106 -14.64611 -14.48212 -14.45576 -14.01671 -13.94655 -13.87649 -13.46128 -13.13227 -13.05746 -13.02821 -12.79942 -12.61532 -12.46442 -12.26164 -11.94826 -11.76548 -11.72341 -11.60243 -11.58647 -11.43965 -11.04066 -10.93367 -10.59871 -10.44097 -10.21209 -9.69591 -9.49789 -9.46321 -9.07170 -8.50524 -8.45977 -8.07653 -7.95948 -6.41695 -3.82436 1.75934 2.38382 2.67823 2.73101 3.20450 3.26169 3.28962 3.30822 3.90613 4.06327 4.27861 4.30573 4.59547 4.67100 4.81975 4.83915 4.87232 5.02355 5.05873 5.08482 5.12112 5.20416 5.24017 5.28957 5.31564 5.44985 5.58605 5.61177 5.64453 5.65825 5.77372 5.80147 5.94229 5.96169 6.00496 6.11791 6.19394 6.26216 6.51568 6.56913 6.84882 7.16387 7.51263 7.55171 7.61471 7.62192 8.06132 8.30656 8.61240 9.17917 9.54232 10.05717 10.75896 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002202 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.210707 B =12713.043560 C =14281.605909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.097 0.903 4 C 0.051 3.949 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.724 5.724 19 C 0.522 3.478 20 O -0.531 6.531 21 C -0.029 4.029 22 H 0.097 0.903 23 C -0.141 4.141 24 C -0.213 4.213 25 C 0.084 3.916 26 N -0.302 5.302 27 N -0.382 5.382 28 C 0.104 3.896 29 C 0.056 3.944 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.396 0.604 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.180 0.820 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 1.073 18.438 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.079 4.079 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.377 5.377 19 C 0.308 3.692 20 O -0.406 6.406 21 C -0.052 4.052 22 H 0.115 0.885 23 C -0.198 4.198 24 C -0.225 4.225 25 C -0.103 4.103 26 N -0.123 5.123 27 N -0.164 5.164 28 C -0.037 4.037 29 C -0.090 4.090 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.168 0.832 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.197 0.803 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.080 3.819 19.608 26.283 hybrid contribution 0.197 -2.481 -0.982 2.675 sum -16.883 1.338 18.626 25.174 Atomic orbital electron populations 1.22138 0.95259 1.01906 1.02617 1.20998 0.93235 0.98533 0.83239 0.88492 1.22301 0.88825 0.98908 0.97914 1.59995 1.07489 1.57530 1.04916 1.21690 0.95155 0.96914 0.94513 1.19802 0.88068 0.84284 0.85339 1.90532 1.71112 1.51450 1.33473 1.41852 1.07398 1.50870 1.19882 1.19654 0.81538 1.35125 1.06575 0.87969 1.25263 1.00683 0.96786 0.95220 1.69606 1.36778 1.38580 1.09370 0.85917 0.82146 0.78627 0.77531 1.19921 1.21004 1.19870 1.46027 1.67929 1.13781 1.09915 1.20544 0.77039 0.87367 0.84253 1.90697 1.49337 1.15769 1.84792 1.19526 0.99179 0.96216 0.90250 0.88498 1.21778 0.94246 1.01598 1.02201 1.19439 1.06335 1.00403 0.96352 1.23682 0.98527 0.93335 0.94713 1.77389 1.10452 1.17841 1.06612 1.48378 1.35883 1.17766 1.14342 1.21796 0.99173 1.03825 0.78925 1.22189 1.01189 0.93289 0.92314 0.91549 0.92653 0.92005 0.95086 0.89595 0.83227 0.93916 0.89518 0.77481 0.91841 0.77007 0.91394 0.91523 0.91744 0.80276 0.90938 0.89415 0.89728 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.49 37.16 0.35 -1.13 16 2 C 0.14 1.61 2.88 -67.93 -0.20 1.42 16 3 H 0.10 1.36 7.57 -51.93 -0.39 0.97 16 4 C 0.05 0.57 5.30 -3.83 -0.02 0.55 16 5 N -0.67 -10.25 6.12 -115.07 -0.70 -10.95 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 8 O -0.58 -15.56 15.78 5.54 0.09 -15.48 16 9 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 10 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 13 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 14 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.72 -7.56 4.25 -53.81 -0.23 -7.78 16 19 C 0.52 6.36 7.08 -10.98 -0.08 6.29 16 20 O -0.53 -8.54 15.04 5.56 0.08 -8.46 16 21 C -0.03 -0.28 3.09 -92.92 -0.29 -0.57 16 22 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 23 C -0.14 -1.35 8.98 37.16 0.33 -1.02 16 24 C -0.21 -2.41 4.36 -105.06 -0.46 -2.86 16 25 C 0.08 1.12 10.78 -17.36 -0.19 0.94 16 26 N -0.30 -4.14 12.58 30.63 0.39 -3.76 16 27 N -0.38 -3.98 4.01 -68.16 -0.27 -4.25 16 28 C 0.10 0.60 11.47 59.85 0.69 1.28 16 29 C 0.06 0.53 11.38 -17.22 -0.20 0.33 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.35 5.41 7.28 -39.29 -0.29 5.12 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.40 3.34 7.56 -40.82 -0.31 3.03 16 41 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 44 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -36.16 406.10 -6.84 -43.00 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.55 Total: 15.16 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.41 Total: 8.20 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.15 Total: -64.51 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.17 Total: -23.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.16 -6.84 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321770809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.827 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds