Wall clock time and date at job start Tue Mar 31 2020 20:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 5 5 N 1.46895 * 109.47819 * 185.00126 * 4 2 1 6 6 C 1.46890 * 111.00488 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47580 * 179.97438 * 6 5 4 8 8 O 1.21300 * 119.99236 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00353 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99863 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00455 * 0.02562 * 10 9 7 12 12 C 1.38957 * 119.99963 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00068 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46851 * 60.00157 * 14 12 10 16 16 H 1.48500 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47314 * 300.00503 * 14 12 10 18 18 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 19 19 C 1.34773 * 119.99969 * 274.72265 * 18 2 1 20 20 O 1.21281 * 120.00220 * 0.02562 * 19 18 2 21 21 C 1.50706 * 120.00080 * 180.02562 * 19 18 2 22 22 H 1.09004 * 109.46762 * 300.00389 * 21 19 18 23 23 C 1.53004 * 109.46763 * 60.00061 * 21 19 18 24 24 C 1.50690 * 109.47185 * 180.02562 * 21 19 18 25 25 C 1.39871 * 126.03936 * 299.69081 * 24 21 19 26 26 N 1.30843 * 108.20018 * 179.82090 * 25 24 21 27 27 N 1.40081 * 108.20536 * 0.43626 * 26 25 24 28 28 C 1.46507 * 126.03805 * 179.73870 * 27 26 25 29 29 C 1.34949 * 107.92535 * 359.72104 * 27 26 25 30 30 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 33 33 H 1.09002 * 109.47378 * 305.00625 * 4 2 1 34 34 H 1.09004 * 109.46895 * 64.99844 * 4 2 1 35 35 H 1.00909 * 110.99812 * 56.04187 * 5 4 2 36 36 H 1.08996 * 109.47333 * 299.99866 * 6 5 4 37 37 H 1.08997 * 109.47417 * 60.00044 * 6 5 4 38 38 H 0.96998 * 120.00558 * 0.02562 * 9 7 6 39 39 H 0.97003 * 119.99417 * 179.97438 * 13 12 10 40 40 H 0.97005 * 119.99811 * 95.00317 * 18 2 1 41 41 H 1.08995 * 109.46910 * 60.00609 * 23 21 19 42 42 H 1.09002 * 109.46848 * 180.02562 * 23 21 19 43 43 H 1.09000 * 109.47019 * 299.99778 * 23 21 19 44 44 H 1.08000 * 125.90182 * 0.02562 * 25 24 21 45 45 H 1.08995 * 109.46713 * 269.98010 * 28 27 26 46 46 H 1.09000 * 109.46687 * 29.98201 * 28 27 26 47 47 H 1.09001 * 109.47009 * 149.97840 * 28 27 26 48 48 H 1.08004 * 126.12712 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5149 -2.3765 7 6 5.5318 -1.6034 -2.2811 8 8 6.1067 -1.1392 -1.3191 9 7 6.2356 -2.1991 -3.2640 10 6 7.6014 -2.2801 -3.1768 11 1 8.1134 -1.8668 -2.3204 12 6 8.3270 -2.8948 -4.1900 13 7 7.7041 -3.3981 -5.2319 14 14 10.1881 -3.0045 -4.0716 15 1 10.5625 -3.7630 -2.8511 16 1 10.7202 -3.7007 -5.2705 17 1 10.7610 -1.6363 -3.9993 18 7 2.0182 -0.6906 1.1963 19 6 2.1522 -0.0169 2.3558 20 8 1.8681 1.1610 2.4091 21 6 2.6550 -0.7271 3.5862 22 1 1.9800 -1.5464 3.8341 23 6 4.0550 -1.2830 3.3178 24 6 2.7114 0.2427 4.7382 25 6 3.4744 1.4138 4.7915 26 7 3.2585 1.9900 5.9462 27 7 2.3578 1.1975 6.6692 28 6 1.8525 1.4768 8.0157 29 6 2.0373 0.1315 5.9063 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.7996 -1.2884 -0.3431 36 1 3.6097 -2.5189 -2.4307 37 1 3.7560 -0.9571 -3.2718 38 1 5.7759 -2.5706 -4.0330 39 1 8.2107 -3.8269 -5.9393 40 1 2.2489 -1.6318 1.1527 41 1 4.7298 -0.4638 3.0700 42 1 4.4184 -1.7971 4.2076 43 1 4.0137 -1.9846 2.4847 44 1 4.1263 1.7808 4.0126 45 1 2.5129 1.0209 8.7533 46 1 1.8190 2.5546 8.1748 47 1 0.8497 1.0627 8.1206 48 1 1.3639 -0.6675 6.1792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321770809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:07 Heat of formation + Delta-G solvation = -24.865528 kcal Electronic energy + Delta-G solvation = -28773.971958 eV Core-core repulsion = 24671.421246 eV Total energy + Delta-G solvation = -4102.550712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23814 -40.74718 -40.07618 -37.83790 -35.99856 -35.37538 -35.00043 -33.57376 -33.22445 -31.77760 -30.18313 -28.93805 -27.32538 -26.68962 -25.43536 -24.55816 -22.72571 -22.00650 -21.46769 -21.07745 -20.62843 -19.88146 -18.36651 -17.67776 -17.63319 -16.98912 -16.83172 -16.34075 -16.28267 -16.07435 -15.87738 -15.37744 -15.32104 -15.17631 -14.89954 -14.68745 -14.28595 -14.00982 -13.88131 -13.62182 -13.51222 -13.39649 -13.27275 -13.11054 -13.04952 -12.99668 -12.76632 -12.62319 -12.51314 -12.42656 -12.39969 -12.11683 -11.87953 -11.48222 -11.43747 -10.65696 -10.32950 -10.30291 -9.99180 -9.97613 -9.29941 -9.27239 -8.44867 -5.93081 0.98858 1.40698 1.42837 1.53312 1.72536 1.78357 1.80338 2.08381 2.30258 2.44499 2.93364 3.22764 3.53997 3.62143 3.84099 3.93935 4.03346 4.24228 4.24960 4.27028 4.32678 4.38634 4.43434 4.46863 4.51901 4.53664 4.63204 4.70603 4.71733 4.79397 4.84121 4.85003 4.87834 5.02591 5.12704 5.21291 5.31525 5.39226 5.42678 5.63912 5.67047 5.90320 6.12225 6.21113 6.43893 6.62695 6.67377 6.75668 7.15019 7.41800 7.59249 8.14946 8.72100 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002202 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.210707 B =12713.043560 C =14281.605909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.057 3.943 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.275 1.275 18 N -0.715 5.715 19 C 0.517 3.483 20 O -0.577 6.577 21 C -0.018 4.018 22 H 0.136 0.864 23 C -0.136 4.136 24 C -0.235 4.235 25 C 0.059 3.941 26 N -0.344 5.344 27 N -0.382 5.382 28 C 0.094 3.906 29 C 0.071 3.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.345 0.655 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.408 0.592 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.161 0.839 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -1.230 18.890 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.200 1.200 18 N -0.367 5.367 19 C 0.305 3.695 20 O -0.456 6.456 21 C -0.040 4.040 22 H 0.154 0.846 23 C -0.194 4.194 24 C -0.247 4.247 25 C -0.126 4.126 26 N -0.167 5.167 27 N -0.164 5.164 28 C -0.046 4.046 29 C -0.076 4.076 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.178 0.822 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.136 0.864 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.092 1.490 20.038 27.718 hybrid contribution 0.757 -1.718 -1.051 2.152 sum -18.335 -0.228 18.987 26.396 Atomic orbital electron populations 1.22035 0.93298 1.03150 1.02368 1.20914 0.94614 0.96730 0.83584 0.92155 1.22345 0.86193 1.00563 0.98109 1.59956 1.10262 1.57685 1.04194 1.21542 0.90163 0.99169 0.95808 1.20949 0.90757 0.82111 0.83825 1.90506 1.72861 1.52652 1.34917 1.41915 1.06786 1.51663 1.20658 1.19605 0.83180 1.36807 1.06676 0.90462 1.26005 1.04735 0.95917 0.94588 1.69662 1.38242 1.38478 1.09609 0.85023 0.77043 0.78489 0.77993 1.19585 1.19493 1.20037 1.45966 1.67158 1.14281 1.09309 1.21072 0.76240 0.86916 0.85296 1.90679 1.51501 1.17843 1.85574 1.19528 0.99528 0.96528 0.88457 0.84624 1.21741 0.93875 1.00677 1.03107 1.19683 1.06893 1.00250 0.97876 1.23624 0.99434 0.94849 0.94691 1.77281 1.12490 1.19581 1.07322 1.48779 1.34734 1.17438 1.15446 1.22186 1.01186 1.04174 0.77039 1.22878 1.00261 0.93415 0.91086 0.90403 0.90534 0.93700 0.92104 0.88713 0.83587 0.90841 0.87860 0.76927 0.91338 0.75533 0.94456 0.90167 0.90910 0.82184 0.89397 0.89838 0.86353 0.76594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.49 71.98 0.68 -1.80 16 2 C 0.15 3.13 2.88 44.99 0.13 3.26 16 3 H 0.06 1.75 7.57 -2.39 -0.02 1.74 16 4 C 0.06 1.14 5.30 86.30 0.46 1.60 16 5 N -0.69 -20.30 6.12 -517.97 -3.17 -23.47 16 6 C 0.07 2.09 6.17 85.56 0.53 2.62 16 7 C 0.44 20.27 7.82 87.66 0.69 20.96 16 8 O -0.62 -34.18 15.78 -3.09 -0.05 -34.23 16 9 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 10 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.09 13.05 21.67 0.28 -48.81 16 14 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 N -0.71 -14.21 4.25 -442.54 -1.88 -16.09 16 19 C 0.52 12.63 7.08 87.66 0.62 13.25 16 20 O -0.58 -19.48 15.04 -3.03 -0.05 -19.52 16 21 C -0.02 -0.33 3.09 -12.29 -0.04 -0.37 16 22 H 0.14 1.40 8.11 -2.39 -0.02 1.38 16 23 C -0.14 -2.58 8.98 71.98 0.65 -1.94 16 24 C -0.24 -5.23 4.36 -20.15 -0.09 -5.32 16 25 C 0.06 1.71 10.78 85.24 0.92 2.62 16 26 N -0.34 -9.89 12.58 -57.02 -0.72 -10.61 16 27 N -0.38 -7.56 4.01 -369.55 -1.48 -9.04 16 28 C 0.09 0.88 11.47 127.77 1.47 2.35 16 29 C 0.07 1.17 11.38 83.54 0.95 2.12 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.34 10.44 7.28 -89.69 -0.65 9.79 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.40 18.88 7.90 -92.71 -0.73 18.14 16 39 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.41 6.04 7.56 -92.70 -0.70 5.34 16 41 H 0.04 0.92 8.02 -2.39 -0.02 0.90 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.22 7.56 -2.39 -0.02 1.21 16 44 H 0.16 4.91 8.06 -2.91 -0.02 4.89 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.22 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -83.00 406.10 0.49 -82.51 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -1.09 Total: 43.69 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 8.24 Total: 21.18 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -8.59 Total: -138.52 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.09 Total: -53.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -83.00 0.49 -82.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321770809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.645 kcal (2) G-P(sol) polarization free energy of solvation -83.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds