Wall clock time and date at job start Tue Mar 31 2020 19:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47535 * 325.00618 * 8 7 5 10 10 C 1.53003 * 109.47218 * 85.00262 * 8 7 5 11 11 C 1.52999 * 109.47017 * 205.00005 * 8 7 5 12 12 N 1.46900 * 109.47046 * 55.00470 * 11 8 7 13 13 C 1.46899 * 111.00188 * 179.97438 * 12 11 8 14 14 C 1.50701 * 109.47047 * 179.97438 * 13 12 11 15 15 O 1.21300 * 120.00204 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99987 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00113 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99936 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99949 * 179.97438 * 17 16 14 20 20 N 1.31404 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46900 * 90.00332 * 21 19 17 23 23 H 1.48500 * 109.46810 * 209.99972 * 21 19 17 24 24 H 1.48500 * 109.47272 * 330.00056 * 21 19 17 25 25 N 1.46500 * 109.46959 * 119.99432 * 2 1 3 26 26 C 1.34942 * 126.03632 * 34.72475 * 25 2 1 27 27 C 1.35321 * 107.74746 * 179.83616 * 26 25 2 28 28 C 1.39868 * 107.91602 * 0.41960 * 27 26 25 29 29 N 1.30844 * 108.20519 * 359.73995 * 28 27 26 30 30 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 32 32 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 33 33 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 34 34 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 35 35 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47614 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47302 * 299.99899 * 10 8 7 38 38 H 1.09006 * 109.46570 * 59.99667 * 10 8 7 39 39 H 1.09002 * 109.47222 * 174.99915 * 11 8 7 40 40 H 1.09000 * 109.47594 * 295.00490 * 11 8 7 41 41 H 1.00898 * 110.99942 * 303.95726 * 12 11 8 42 42 H 1.08995 * 109.47429 * 299.99789 * 13 12 11 43 43 H 1.08996 * 109.47301 * 60.00214 * 13 12 11 44 44 H 0.96996 * 120.00048 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99935 * 179.97438 * 20 19 17 46 46 H 1.07999 * 126.12863 * 359.97438 * 26 25 2 47 47 H 1.08001 * 126.04071 * 180.15325 * 27 26 25 48 48 H 1.08002 * 125.89922 * 179.71434 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5983 0.3653 -4.8932 9 1 0.6222 0.8229 -4.7324 10 6 2.6352 1.4576 -5.1630 11 6 1.5274 -0.5786 -6.0952 12 7 0.6212 -1.6937 -5.7894 13 6 0.5277 -2.6224 -6.9237 14 6 -0.4079 -3.7507 -6.5733 15 8 -0.9444 -3.7782 -5.4857 16 7 -0.6485 -4.7292 -7.4683 17 6 -1.5000 -5.7553 -7.1497 18 1 -1.9777 -5.7798 -6.1814 19 6 -1.7485 -6.7639 -8.0727 20 7 -1.1677 -6.7338 -9.2510 21 14 -2.9082 -8.1624 -7.6383 22 1 -4.2923 -7.7992 -8.0354 23 1 -2.4929 -9.3921 -8.3600 24 1 -2.8614 -8.4078 -6.1745 25 7 2.0183 -0.6905 1.1962 26 6 1.4374 -1.7524 1.7926 27 6 2.1966 -2.0927 2.8598 28 6 3.2734 -1.2023 2.9231 29 7 3.1676 -0.3613 1.9264 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7994 -1.2055 35 1 2.4893 -1.2154 -3.7907 36 1 2.3475 2.0205 -6.0510 37 1 2.6858 2.1301 -4.3067 38 1 3.6114 1.0000 -5.3238 39 1 1.1541 -0.0347 -6.9629 40 1 2.5225 -0.9678 -6.3108 41 1 0.9099 -2.1746 -4.9507 42 1 0.1473 -2.0924 -7.7968 43 1 1.5157 -3.0258 -7.1454 44 1 -0.2198 -4.7070 -8.3381 45 1 -1.3408 -7.4381 -9.8952 46 1 0.5302 -2.2443 1.4739 47 1 2.0028 -2.9052 3.5444 48 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322043109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:35 Heat of formation + Delta-G solvation = 3.124300 kcal Electronic energy + Delta-G solvation = -28540.335944 eV Core-core repulsion = 24438.998962 eV Total energy + Delta-G solvation = -4101.336982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44009 -40.16523 -38.40069 -37.06741 -35.47840 -34.33505 -33.71071 -31.63652 -31.24485 -30.41090 -29.90430 -28.05356 -27.66976 -25.09632 -23.87054 -23.29496 -21.64464 -21.25229 -20.66066 -19.99968 -19.30949 -18.00843 -17.86120 -16.95933 -16.49611 -16.07658 -15.93535 -15.45376 -15.06787 -14.86077 -14.65422 -14.51033 -14.09681 -13.96352 -13.92015 -13.55402 -13.49063 -13.15038 -13.11404 -12.91363 -12.68887 -12.54689 -12.19975 -11.97471 -11.82223 -11.69158 -11.66342 -11.50839 -11.49120 -11.12802 -11.03863 -10.87460 -10.43418 -10.26705 -10.06086 -9.62349 -9.56021 -9.28372 -8.81025 -8.54173 -8.16585 -8.01660 -6.46707 -3.87723 1.69453 2.17432 2.42387 2.66710 3.03195 3.14322 3.23375 3.28756 3.84233 3.98357 4.17539 4.22377 4.33606 4.52229 4.66516 4.75480 4.76378 4.90484 4.93456 5.08403 5.11301 5.15584 5.19058 5.21566 5.35937 5.40584 5.48193 5.50881 5.51505 5.55704 5.68269 5.70075 5.82637 5.85191 5.89767 5.95069 6.01976 6.19417 6.31975 6.45429 6.82535 7.06628 7.24280 7.50363 7.51486 7.52355 7.99583 8.00772 8.55483 9.12633 9.48513 9.99573 10.70903 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.002275 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.051626 B =12306.819729 C =14429.452573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.178 3.822 3 H 0.110 0.890 4 C -0.157 4.157 5 C 0.527 3.473 6 O -0.537 6.537 7 N -0.720 5.720 8 C 0.144 3.856 9 H 0.099 0.901 10 C -0.162 4.162 11 C 0.050 3.950 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.439 3.561 15 O -0.584 6.584 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 N -0.367 5.367 26 C 0.058 3.942 27 C -0.278 4.278 28 C 0.042 3.958 29 N -0.300 5.300 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.347 0.653 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.173 0.827 47 H 0.146 0.854 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 12.359 13.914 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.076 3.924 3 H 0.128 0.872 4 C -0.198 4.198 5 C 0.313 3.687 6 O -0.414 6.414 7 N -0.371 5.371 8 C 0.040 3.960 9 H 0.117 0.883 10 C -0.221 4.221 11 C -0.080 4.080 12 N -0.300 5.300 13 C -0.083 4.083 14 C 0.224 3.776 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.149 5.149 26 C -0.088 4.088 27 C -0.308 4.308 28 C -0.144 4.144 29 N -0.121 5.121 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.166 0.834 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.190 0.810 47 H 0.164 0.836 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.774 14.366 13.664 22.104 hybrid contribution 0.510 -2.497 -0.117 2.551 sum 10.284 11.869 13.547 20.740 Atomic orbital electron populations 1.22345 0.91907 1.03431 1.05095 1.20920 0.95451 0.96680 0.79360 0.87231 1.22101 1.03984 1.01239 0.92518 1.20130 0.78805 0.85416 0.84332 1.90688 1.39699 1.24512 1.86497 1.46000 1.57629 1.27660 1.05838 1.21064 0.99718 0.91795 0.83435 0.88264 1.22152 0.98790 0.98647 1.02464 1.22315 0.94800 0.93373 0.97548 1.60011 1.52424 1.11753 1.05782 1.21693 0.98315 0.93733 0.94535 1.19787 0.86806 0.84530 0.86437 1.90525 1.54412 1.78231 1.23635 1.41865 1.41437 1.21023 1.15570 1.19697 1.21336 0.99975 1.01956 0.87922 1.25272 0.98389 0.99187 0.95079 1.69607 1.43547 1.34983 1.06088 0.85853 0.79891 0.79785 0.78741 1.20344 1.20909 1.19406 1.48957 1.19281 1.24283 1.22387 1.22583 0.99850 0.91119 0.95261 1.21526 0.99270 1.06544 1.03436 1.23884 0.99343 0.93929 0.97285 1.77364 1.03143 1.23885 1.07732 0.91774 0.91674 0.87774 0.87790 0.88101 0.76736 0.91304 0.91858 0.92556 0.89381 0.94969 0.83352 0.89424 0.93855 0.77452 0.91825 0.80969 0.83625 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.57 37.16 0.32 -1.27 16 2 C 0.18 1.74 3.05 -67.93 -0.21 1.53 16 3 H 0.11 1.19 7.95 -51.93 -0.41 0.78 16 4 C -0.16 -1.39 5.50 -27.88 -0.15 -1.54 16 5 C 0.53 5.64 7.51 -10.98 -0.08 5.56 16 6 O -0.54 -7.25 13.63 5.56 0.08 -7.18 16 7 N -0.72 -6.89 4.36 -53.81 -0.23 -7.12 16 8 C 0.14 1.47 2.88 -67.93 -0.20 1.28 16 9 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 10 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 11 C 0.05 0.53 5.30 -3.82 -0.02 0.51 16 12 N -0.67 -9.88 6.12 -115.06 -0.70 -10.58 16 13 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 14 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 15 O -0.58 -15.41 15.78 5.54 0.09 -15.32 16 16 N -0.56 -13.91 5.29 -10.96 -0.06 -13.96 16 17 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 N -0.37 -3.86 3.53 -54.86 -0.19 -4.05 16 26 C 0.06 0.54 10.59 -17.22 -0.18 0.36 16 27 C -0.28 -2.49 10.80 -40.01 -0.43 -2.92 16 28 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 29 N -0.30 -3.56 12.58 30.63 0.39 -3.17 16 30 H 0.06 0.54 7.15 -51.93 -0.37 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.13 8.15 -40.82 -0.33 2.80 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 5.21 7.28 -39.29 -0.29 4.93 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.17 1.19 7.25 -52.49 -0.38 0.81 16 47 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -33.84 402.30 -7.44 -41.28 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -7.39 Total: 16.20 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.17 Total: 5.53 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.08 Total: -62.27 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.84 -7.44 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322043109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.400 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds