Wall clock time and date at job start Tue Mar 31 2020 19:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47535 * 325.00618 * 8 7 5 10 10 C 1.53003 * 109.47218 * 85.00262 * 8 7 5 11 11 C 1.52999 * 109.47017 * 205.00005 * 8 7 5 12 12 N 1.46900 * 109.47046 * 55.00470 * 11 8 7 13 13 C 1.46899 * 111.00188 * 179.97438 * 12 11 8 14 14 C 1.50701 * 109.47047 * 179.97438 * 13 12 11 15 15 O 1.21300 * 120.00204 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99987 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00113 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99936 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99949 * 179.97438 * 17 16 14 20 20 N 1.31404 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46900 * 90.00332 * 21 19 17 23 23 H 1.48500 * 109.46810 * 209.99972 * 21 19 17 24 24 H 1.48500 * 109.47272 * 330.00056 * 21 19 17 25 25 N 1.46500 * 109.46959 * 119.99432 * 2 1 3 26 26 C 1.34942 * 126.03632 * 34.72475 * 25 2 1 27 27 C 1.35321 * 107.74746 * 179.83616 * 26 25 2 28 28 C 1.39868 * 107.91602 * 0.41960 * 27 26 25 29 29 N 1.30844 * 108.20519 * 359.73995 * 28 27 26 30 30 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 32 32 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 33 33 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 34 34 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 35 35 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47614 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47302 * 299.99899 * 10 8 7 38 38 H 1.09006 * 109.46570 * 59.99667 * 10 8 7 39 39 H 1.09002 * 109.47222 * 174.99915 * 11 8 7 40 40 H 1.09000 * 109.47594 * 295.00490 * 11 8 7 41 41 H 1.00898 * 110.99942 * 303.95726 * 12 11 8 42 42 H 1.08995 * 109.47429 * 299.99789 * 13 12 11 43 43 H 1.08996 * 109.47301 * 60.00214 * 13 12 11 44 44 H 0.96996 * 120.00048 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99935 * 179.97438 * 20 19 17 46 46 H 1.07999 * 126.12863 * 359.97438 * 26 25 2 47 47 H 1.08001 * 126.04071 * 180.15325 * 27 26 25 48 48 H 1.08002 * 125.89922 * 179.71434 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5983 0.3653 -4.8932 9 1 0.6222 0.8229 -4.7324 10 6 2.6352 1.4576 -5.1630 11 6 1.5274 -0.5786 -6.0952 12 7 0.6212 -1.6937 -5.7894 13 6 0.5277 -2.6224 -6.9237 14 6 -0.4079 -3.7507 -6.5733 15 8 -0.9444 -3.7782 -5.4857 16 7 -0.6485 -4.7292 -7.4683 17 6 -1.5000 -5.7553 -7.1497 18 1 -1.9777 -5.7798 -6.1814 19 6 -1.7485 -6.7639 -8.0727 20 7 -1.1677 -6.7338 -9.2510 21 14 -2.9082 -8.1624 -7.6383 22 1 -4.2923 -7.7992 -8.0354 23 1 -2.4929 -9.3921 -8.3600 24 1 -2.8614 -8.4078 -6.1745 25 7 2.0183 -0.6905 1.1962 26 6 1.4374 -1.7524 1.7926 27 6 2.1966 -2.0927 2.8598 28 6 3.2734 -1.2023 2.9231 29 7 3.1676 -0.3613 1.9264 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7994 -1.2055 35 1 2.4893 -1.2154 -3.7907 36 1 2.3475 2.0205 -6.0510 37 1 2.6858 2.1301 -4.3067 38 1 3.6114 1.0000 -5.3238 39 1 1.1541 -0.0347 -6.9629 40 1 2.5225 -0.9678 -6.3108 41 1 0.9099 -2.1746 -4.9507 42 1 0.1473 -2.0924 -7.7968 43 1 1.5157 -3.0258 -7.1454 44 1 -0.2198 -4.7070 -8.3381 45 1 -1.3408 -7.4381 -9.8952 46 1 0.5302 -2.2443 1.4739 47 1 2.0028 -2.9052 3.5444 48 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322043109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:34 Heat of formation + Delta-G solvation = -22.552611 kcal Electronic energy + Delta-G solvation = -28541.449378 eV Core-core repulsion = 24438.998962 eV Total energy + Delta-G solvation = -4102.450416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17240 -41.02843 -40.13162 -38.08805 -36.34442 -35.98628 -35.07832 -33.26166 -32.46101 -31.15716 -30.63293 -28.98721 -28.80902 -26.70209 -24.81534 -24.42878 -22.47358 -21.96360 -21.50338 -21.09381 -20.72202 -19.90889 -18.73139 -18.03685 -17.48002 -17.25572 -16.86079 -16.73020 -16.38373 -16.01319 -15.84838 -15.63921 -15.33587 -15.23307 -14.85579 -14.67783 -14.35429 -14.22047 -13.99913 -13.87692 -13.62914 -13.51618 -13.32888 -13.09446 -13.04803 -12.94489 -12.79383 -12.61079 -12.45911 -12.41107 -12.25239 -12.12155 -11.94414 -11.61725 -11.50636 -10.94740 -10.39675 -10.36438 -10.09979 -10.01426 -9.52749 -9.33026 -8.46821 -5.95286 0.97100 1.38051 1.42298 1.42979 1.54485 1.58293 1.97779 2.05593 2.24919 2.29344 2.88946 3.20889 3.42165 3.50421 3.58242 3.76200 3.90955 3.98874 4.10902 4.14360 4.20146 4.27251 4.36822 4.41265 4.46781 4.50223 4.59750 4.67240 4.70103 4.75636 4.76650 4.79279 4.82312 4.95031 5.07118 5.16783 5.19976 5.28000 5.41067 5.52036 5.78058 5.86324 6.08341 6.12604 6.37935 6.46378 6.60160 6.79655 7.12847 7.18693 7.56727 8.11839 8.70410 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.002275 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.051626 B =12306.819729 C =14429.452573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.181 3.819 3 H 0.092 0.908 4 C -0.146 4.146 5 C 0.525 3.475 6 O -0.569 6.569 7 N -0.714 5.714 8 C 0.147 3.853 9 H 0.071 0.929 10 C -0.153 4.153 11 C 0.056 3.944 12 N -0.685 5.685 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.374 5.374 26 C 0.051 3.949 27 C -0.284 4.284 28 C 0.038 3.962 29 N -0.340 5.340 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.344 0.656 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.193 0.807 47 H 0.167 0.833 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.659 11.646 13.649 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 H 0.111 0.889 4 C -0.187 4.187 5 C 0.312 3.688 6 O -0.449 6.449 7 N -0.365 5.365 8 C 0.043 3.957 9 H 0.089 0.911 10 C -0.212 4.212 11 C -0.073 4.073 12 N -0.319 5.319 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.197 1.197 25 N -0.157 5.157 26 C -0.095 4.095 27 C -0.313 4.313 28 C -0.147 4.147 29 N -0.161 5.161 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.210 0.790 47 H 0.184 0.816 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.756 13.657 13.369 21.930 hybrid contribution 0.232 -2.228 0.015 2.240 sum 10.988 11.429 13.385 20.749 Atomic orbital electron populations 1.22243 0.91727 1.03839 1.04212 1.20810 0.95507 0.96007 0.79812 0.88942 1.22011 1.04445 1.01083 0.91151 1.20430 0.78257 0.85087 0.85069 1.90679 1.41208 1.26002 1.86967 1.45966 1.57220 1.27912 1.05435 1.20982 0.99041 0.92187 0.83522 0.91091 1.22067 0.98894 0.97842 1.02353 1.22364 0.95234 0.91924 0.97823 1.59982 1.54567 1.12143 1.05164 1.21549 0.97831 0.91870 0.95500 1.20929 0.86419 0.85007 0.85283 1.90495 1.55974 1.79240 1.25298 1.41937 1.41624 1.21295 1.16184 1.19643 1.23053 1.01911 1.01616 0.90364 1.26020 0.99495 1.00924 0.94837 1.69663 1.44108 1.35743 1.06541 0.84953 0.78023 0.77207 0.78330 1.19826 1.19562 1.19664 1.48975 1.19360 1.24792 1.22576 1.23049 1.00479 0.90715 0.95271 1.21870 0.98871 1.06914 1.03630 1.24422 1.00000 0.93266 0.97010 1.77323 1.04325 1.25442 1.09048 0.90664 0.91544 0.89579 0.86789 0.87255 0.75528 0.90022 0.93388 0.91021 0.88378 0.92446 0.83715 0.87691 0.91042 0.76937 0.91317 0.78965 0.81553 0.77709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.57 71.98 0.62 -2.46 16 2 C 0.18 3.58 3.05 44.99 0.14 3.72 16 3 H 0.09 2.13 7.95 -2.39 -0.02 2.11 16 4 C -0.15 -2.52 5.50 29.85 0.16 -2.36 16 5 C 0.52 11.24 7.51 87.66 0.66 11.90 16 6 O -0.57 -15.91 13.63 -3.03 -0.04 -15.95 16 7 N -0.71 -13.01 4.36 -442.54 -1.93 -14.93 16 8 C 0.15 2.84 2.88 44.99 0.13 2.97 16 9 H 0.07 1.80 7.58 -2.39 -0.02 1.79 16 10 C -0.15 -2.35 9.48 71.98 0.68 -1.66 16 11 C 0.06 1.04 5.30 86.30 0.46 1.50 16 12 N -0.69 -19.16 6.12 -517.94 -3.17 -22.33 16 13 C 0.06 2.01 6.17 85.56 0.53 2.53 16 14 C 0.44 19.81 7.82 87.66 0.69 20.49 16 15 O -0.62 -33.34 15.78 -3.09 -0.05 -33.39 16 16 N -0.57 -28.43 5.29 -306.98 -1.62 -30.05 16 17 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 20 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 21 Si 0.99 42.12 29.55 68.60 2.03 44.15 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 N -0.37 -7.74 3.53 -327.49 -1.16 -8.90 16 26 C 0.05 0.88 10.59 83.54 0.88 1.76 16 27 C -0.28 -4.64 10.80 21.99 0.24 -4.40 16 28 C 0.04 0.70 12.03 85.23 1.02 1.72 16 29 N -0.34 -7.95 12.58 -57.02 -0.72 -8.67 16 30 H 0.07 1.22 7.15 -2.39 -0.02 1.21 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.99 5.95 -2.39 -0.01 1.98 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.41 5.77 8.15 -92.71 -0.76 5.02 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.34 9.90 7.28 -89.70 -0.65 9.25 16 42 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 45 H 0.28 13.75 8.31 -92.71 -0.77 12.97 16 46 H 0.19 2.33 7.25 -2.91 -0.02 2.31 16 47 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.29 402.30 -0.03 -74.32 By element: Atomic # 1 Polarization: 47.40 SS G_CDS: -1.14 Total: 46.26 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 7.49 Total: 17.84 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -8.31 Total: -133.22 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.09 Total: -49.34 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.29 -0.03 -74.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322043109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.767 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds