Wall clock time and date at job start Tue Mar 31 2020 19:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 C 1.52999 * 109.47228 * 179.97438 * 21 19 18 23 23 H 1.09002 * 109.47031 * 55.00645 * 22 21 19 24 24 C 1.52999 * 109.47367 * 295.00247 * 22 21 19 25 25 N 1.46505 * 109.47369 * 174.99895 * 22 21 19 26 26 C 1.34948 * 126.03230 * 84.71510 * 25 22 21 27 27 C 1.35321 * 107.74322 * 179.84121 * 26 25 22 28 28 C 1.39864 * 107.91737 * 0.42718 * 27 26 25 29 29 N 1.30833 * 108.20881 * 359.73513 * 28 27 26 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 42 42 H 1.09006 * 109.47337 * 60.00072 * 21 19 18 43 43 H 1.08998 * 109.47073 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46957 * 299.99534 * 24 22 21 45 45 H 1.08997 * 109.46858 * 59.99639 * 24 22 21 46 46 H 1.08000 * 126.13184 * 0.02562 * 26 25 22 47 47 H 1.07997 * 126.03911 * 180.16649 * 27 26 25 48 48 H 1.08005 * 125.89632 * 179.71532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 6 2.7009 0.2543 -4.7588 23 1 3.3018 1.1202 -4.4807 24 6 1.2816 0.7085 -5.1054 25 7 3.3011 -0.4031 -5.9223 26 6 2.6533 -1.1750 -6.8199 27 6 3.5576 -1.5870 -7.7384 28 6 4.8024 -1.0565 -7.3846 29 7 4.6500 -0.3467 -6.2962 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 3.6494 -1.1204 -3.3977 42 1 1.9779 -1.5509 -3.8325 43 1 1.3178 1.4091 -5.9396 44 1 0.6808 -0.1574 -5.3835 45 1 0.8351 1.1977 -4.2397 46 1 1.6009 -1.4177 -6.8090 47 1 3.3548 -2.2177 -8.5912 48 1 5.7296 -1.2071 -7.9177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322043111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:37 Heat of formation + Delta-G solvation = 4.023309 kcal Electronic energy + Delta-G solvation = -28499.351405 eV Core-core repulsion = 24398.053407 eV Total energy + Delta-G solvation = -4101.297998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43942 -40.16818 -38.37962 -37.06491 -35.49314 -34.32101 -33.69152 -31.63937 -31.21981 -30.41296 -29.91827 -28.09343 -27.66146 -25.08645 -23.89247 -23.27826 -21.64279 -21.24779 -20.66091 -20.01767 -19.28692 -18.00110 -17.85333 -16.96718 -16.58070 -16.06808 -15.74351 -15.40472 -15.23314 -14.91368 -14.57076 -14.51782 -14.10872 -14.00157 -13.85438 -13.59807 -13.45480 -13.16905 -13.12540 -12.89966 -12.73707 -12.62971 -12.16897 -11.97171 -11.81201 -11.76972 -11.64809 -11.52448 -11.49196 -11.11695 -11.02373 -10.82744 -10.40675 -10.23929 -10.05044 -9.61862 -9.53333 -9.29226 -8.81254 -8.51602 -8.14302 -7.98920 -6.44173 -3.85030 1.69845 2.18610 2.41422 2.68132 3.03279 3.16804 3.25634 3.31618 3.86976 4.00168 4.14490 4.24205 4.34301 4.51117 4.60119 4.72265 4.78550 4.86102 4.94296 5.04674 5.11192 5.13686 5.16525 5.23337 5.35194 5.40443 5.43659 5.46835 5.49237 5.55689 5.65411 5.71278 5.81070 5.82575 5.85042 5.91515 5.99495 6.21787 6.31303 6.46548 6.82362 7.08672 7.24205 7.53022 7.53391 7.54977 7.99446 8.03666 8.58326 9.15499 9.51205 10.02524 10.73489 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.002293 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.815456 B =12206.161148 C =14580.202806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.720 5.720 19 C 0.527 3.473 20 O -0.537 6.537 21 C -0.157 4.157 22 C 0.176 3.824 23 H 0.113 0.887 24 C -0.167 4.167 25 N -0.366 5.366 26 C 0.053 3.947 27 C -0.277 4.277 28 C 0.042 3.958 29 N -0.292 5.292 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.347 0.653 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.399 0.601 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.170 0.830 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 1.056 -17.752 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.224 3.776 8 O -0.466 6.466 9 N -0.199 5.199 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.371 5.371 19 C 0.313 3.687 20 O -0.414 6.414 21 C -0.198 4.198 22 C 0.074 3.926 23 H 0.131 0.869 24 C -0.225 4.225 25 N -0.149 5.149 26 C -0.094 4.094 27 C -0.307 4.307 28 C -0.145 4.145 29 N -0.113 5.113 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.187 0.813 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.660 3.555 -17.004 24.772 hybrid contribution 0.133 -2.455 -0.162 2.463 sum -17.528 1.100 -17.166 24.558 Atomic orbital electron populations 1.22144 0.94946 1.02059 1.02805 1.21071 0.93422 0.98572 0.83010 0.88262 1.22312 0.88890 0.98980 0.97838 1.60021 1.07431 1.57557 1.04989 1.21694 0.95213 0.96920 0.94429 1.19792 0.88055 0.84376 0.85372 1.90538 1.71095 1.51470 1.33526 1.41859 1.07431 1.50792 1.19868 1.19707 0.81483 1.35096 1.06619 0.87915 1.25267 1.00742 0.96733 0.95187 1.69611 1.36725 1.38608 1.09370 0.85853 0.82136 0.77664 0.78632 1.20346 1.20917 1.19385 1.46000 1.67311 1.13990 1.09820 1.20126 0.77120 0.87162 0.84275 1.90686 1.50150 1.15652 1.84899 1.22100 1.04797 0.99735 0.93189 1.20929 0.95701 0.94812 0.81179 0.86898 1.22315 0.93716 1.02013 1.04409 1.48968 1.06056 1.38547 1.21324 1.22488 0.99428 0.95685 0.91753 1.21512 0.92872 1.11539 1.04769 1.23924 0.99220 0.96685 0.94628 1.77467 0.94336 1.23409 1.16076 0.91303 0.91904 0.92565 0.89391 0.94990 0.83317 0.89431 0.93855 0.77467 0.91856 0.76737 0.87519 0.88373 0.91615 0.92225 0.87970 0.81267 0.83697 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.47 2.88 -67.93 -0.20 1.27 16 3 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 4 C 0.05 0.54 5.30 -3.82 -0.02 0.52 16 5 N -0.67 -10.20 6.12 -115.06 -0.70 -10.91 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 8 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 9 N -0.56 -14.18 5.29 -10.97 -0.06 -14.24 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.72 -6.88 4.36 -53.80 -0.23 -7.12 16 19 C 0.53 5.64 7.51 -10.99 -0.08 5.56 16 20 O -0.54 -7.25 13.63 5.56 0.08 -7.17 16 21 C -0.16 -1.38 5.50 -27.88 -0.15 -1.54 16 22 C 0.18 1.72 3.05 -67.93 -0.21 1.51 16 23 H 0.11 1.34 7.95 -51.93 -0.41 0.93 16 24 C -0.17 -1.29 8.58 37.16 0.32 -0.97 16 25 N -0.37 -3.90 3.53 -54.86 -0.19 -4.09 16 26 C 0.05 0.45 10.59 -17.22 -0.18 0.26 16 27 C -0.28 -2.41 10.80 -40.01 -0.43 -2.84 16 28 C 0.04 0.43 12.02 -17.37 -0.21 0.22 16 29 N -0.29 -3.78 12.58 30.62 0.39 -3.39 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.35 5.44 7.28 -39.29 -0.29 5.15 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.40 3.13 8.15 -40.82 -0.33 2.80 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.34 7.16 -51.93 -0.37 -0.03 16 45 H 0.10 0.92 5.95 -51.93 -0.31 0.62 16 46 H 0.17 0.88 7.27 -52.49 -0.38 0.49 16 47 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -34.99 402.33 -7.44 -42.43 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -7.39 Total: 15.79 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.17 Total: 6.03 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.08 Total: -63.45 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.99 -7.44 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322043111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.450 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds