Wall clock time and date at job start Tue Mar 31 2020 19:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 C 1.52999 * 109.47228 * 179.97438 * 21 19 18 23 23 H 1.09002 * 109.47031 * 55.00645 * 22 21 19 24 24 C 1.52999 * 109.47367 * 295.00247 * 22 21 19 25 25 N 1.46505 * 109.47369 * 174.99895 * 22 21 19 26 26 C 1.34948 * 126.03230 * 84.71510 * 25 22 21 27 27 C 1.35321 * 107.74322 * 179.84121 * 26 25 22 28 28 C 1.39864 * 107.91737 * 0.42718 * 27 26 25 29 29 N 1.30833 * 108.20881 * 359.73513 * 28 27 26 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 42 42 H 1.09006 * 109.47337 * 60.00072 * 21 19 18 43 43 H 1.08998 * 109.47073 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46957 * 299.99534 * 24 22 21 45 45 H 1.08997 * 109.46858 * 59.99639 * 24 22 21 46 46 H 1.08000 * 126.13184 * 0.02562 * 26 25 22 47 47 H 1.07997 * 126.03911 * 180.16649 * 27 26 25 48 48 H 1.08005 * 125.89632 * 179.71532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 6 2.7009 0.2543 -4.7588 23 1 3.3018 1.1202 -4.4807 24 6 1.2816 0.7085 -5.1054 25 7 3.3011 -0.4031 -5.9223 26 6 2.6533 -1.1750 -6.8199 27 6 3.5576 -1.5870 -7.7384 28 6 4.8024 -1.0565 -7.3846 29 7 4.6500 -0.3467 -6.2962 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 3.6494 -1.1204 -3.3977 42 1 1.9779 -1.5509 -3.8325 43 1 1.3178 1.4091 -5.9396 44 1 0.6808 -0.1574 -5.3835 45 1 0.8351 1.1977 -4.2397 46 1 1.6009 -1.4177 -6.8090 47 1 3.3548 -2.2177 -8.5912 48 1 5.7296 -1.2071 -7.9177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322043111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:36 Heat of formation + Delta-G solvation = -23.259094 kcal Electronic energy + Delta-G solvation = -28500.534459 eV Core-core repulsion = 24398.053407 eV Total energy + Delta-G solvation = -4102.481051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16896 -41.02850 -40.15830 -38.09130 -36.34603 -36.00790 -35.09142 -33.28539 -32.45866 -31.15989 -30.62576 -29.00364 -28.77048 -26.71675 -24.82720 -24.41998 -22.47129 -21.97044 -21.49945 -21.11654 -20.71775 -19.93306 -18.72747 -18.04971 -17.48784 -17.34450 -16.86713 -16.54400 -16.38051 -16.08447 -15.93018 -15.65343 -15.44396 -15.14965 -14.79064 -14.74334 -14.36718 -14.18237 -14.00309 -13.82742 -13.63133 -13.52574 -13.40057 -13.11402 -13.03985 -12.81418 -12.80772 -12.63476 -12.48676 -12.43825 -12.23529 -12.13751 -11.93081 -11.57305 -11.53111 -10.93315 -10.40575 -10.39266 -10.10227 -10.03517 -9.51663 -9.34228 -8.48902 -5.97482 0.99691 1.36171 1.40362 1.46291 1.52750 1.56928 1.98583 2.03387 2.25408 2.28291 2.87952 3.18539 3.41952 3.48350 3.61839 3.76700 3.90652 3.99388 4.09769 4.15194 4.20129 4.26701 4.37247 4.42302 4.47011 4.48862 4.58153 4.68789 4.72388 4.75342 4.78489 4.82031 4.84302 4.96822 5.09122 5.17646 5.20444 5.30403 5.39027 5.52575 5.76922 5.85046 6.07065 6.17501 6.35207 6.46591 6.58256 6.81617 7.10922 7.18988 7.54391 8.10201 8.68351 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.002293 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.815456 B =12206.161148 C =14580.202806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.066 0.934 4 C 0.055 3.945 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.434 3.566 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.918 5.918 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.274 1.274 18 N -0.713 5.713 19 C 0.525 3.475 20 O -0.569 6.569 21 C -0.146 4.146 22 C 0.176 3.824 23 H 0.078 0.922 24 C -0.155 4.155 25 N -0.375 5.375 26 C 0.057 3.943 27 C -0.284 4.284 28 C 0.033 3.967 29 N -0.352 5.352 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.342 0.658 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.409 0.591 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.207 0.793 47 H 0.171 0.829 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.553 -0.700 -17.853 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.074 4.074 5 N -0.322 5.322 6 C -0.066 4.066 7 C 0.222 3.778 8 O -0.513 6.513 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.559 5.559 14 Si 0.814 3.186 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.199 1.199 18 N -0.365 5.365 19 C 0.311 3.689 20 O -0.449 6.449 21 C -0.187 4.187 22 C 0.073 3.927 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.157 5.157 26 C -0.089 4.089 27 C -0.313 4.313 28 C -0.152 4.152 29 N -0.173 5.173 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.224 0.776 47 H 0.188 0.812 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -19.687 1.772 -17.078 26.122 hybrid contribution 0.725 -1.885 -0.170 2.027 sum -18.962 -0.113 -17.248 25.633 Atomic orbital electron populations 1.22049 0.92765 1.03228 1.02862 1.21000 0.94954 0.96832 0.83065 0.91536 1.22387 0.86012 1.00652 0.98358 1.59992 1.10447 1.57612 1.04127 1.21548 0.90036 0.99202 0.95861 1.20982 0.90844 0.82169 0.83811 1.90508 1.72923 1.52802 1.35067 1.41921 1.06810 1.51548 1.20654 1.19631 0.83151 1.36918 1.06714 0.90611 1.26007 1.04803 0.95802 0.94520 1.69661 1.38236 1.38424 1.09598 0.84962 0.77006 0.78244 0.78344 1.19768 1.19295 1.19899 1.45965 1.66750 1.14443 1.09345 1.20430 0.76622 0.86810 0.84999 1.90676 1.51679 1.17090 1.85451 1.22016 1.04580 1.00086 0.91978 1.20869 0.96175 0.93982 0.81636 0.90374 1.22216 0.92477 1.02975 1.03673 1.49005 1.05644 1.39226 1.21867 1.23140 1.00976 0.94201 0.90570 1.21888 0.92119 1.11719 1.05614 1.24413 1.00849 0.95923 0.94017 1.77409 0.96187 1.25708 1.17981 0.90195 0.92950 0.90733 0.88398 0.92189 0.83872 0.87603 0.90849 0.76854 0.91240 0.75528 0.88956 0.85098 0.91842 0.89324 0.89279 0.77629 0.81202 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.48 71.98 0.68 -1.41 16 2 C 0.15 2.81 2.88 44.99 0.13 2.94 16 3 H 0.07 1.74 7.58 -2.39 -0.02 1.73 16 4 C 0.05 1.05 5.30 86.30 0.46 1.50 16 5 N -0.69 -20.24 6.12 -517.93 -3.17 -23.41 16 6 C 0.07 2.11 6.17 85.56 0.53 2.64 16 7 C 0.43 20.47 7.82 87.66 0.69 21.15 16 8 O -0.63 -35.08 15.78 -3.07 -0.05 -35.13 16 9 N -0.57 -29.14 5.29 -307.00 -1.62 -30.77 16 10 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 11 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 13 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 14 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 N -0.71 -12.99 4.36 -442.54 -1.93 -14.92 16 19 C 0.52 11.25 7.51 87.66 0.66 11.91 16 20 O -0.57 -15.97 13.63 -3.01 -0.04 -16.01 16 21 C -0.15 -2.52 5.50 29.85 0.16 -2.36 16 22 C 0.18 3.50 3.05 44.99 0.14 3.63 16 23 H 0.08 2.06 7.95 -2.39 -0.02 2.05 16 24 C -0.16 -2.28 8.58 71.98 0.62 -1.66 16 25 N -0.37 -7.89 3.53 -327.48 -1.15 -9.05 16 26 C 0.06 0.85 10.59 83.54 0.89 1.73 16 27 C -0.28 -4.45 10.80 21.99 0.24 -4.21 16 28 C 0.03 0.68 12.02 85.24 1.02 1.70 16 29 N -0.35 -9.40 12.58 -57.03 -0.72 -10.12 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.34 10.52 7.28 -89.69 -0.65 9.87 16 36 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.41 5.76 8.15 -92.71 -0.76 5.01 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.76 7.16 -2.39 -0.02 0.74 16 45 H 0.09 1.60 5.95 -2.39 -0.01 1.59 16 46 H 0.21 1.32 7.27 -2.91 -0.02 1.30 16 47 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 48 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -79.39 402.33 -0.02 -79.41 By element: Atomic # 1 Polarization: 45.73 SS G_CDS: -1.14 Total: 44.59 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 7.49 Total: 19.15 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -8.31 Total: -137.21 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -79.39 -0.02 -79.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322043111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.152 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds