Wall clock time and date at job start Tue Mar 31 2020 20:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46510 * 109.47045 * 2 1 4 4 N 1.28436 * 125.19096 * 259.79209 * 3 2 1 5 5 C 1.30866 * 110.92823 * 180.02562 * 4 3 2 6 6 C 1.39674 * 107.85888 * 359.76866 * 5 4 3 7 7 C 1.36601 * 125.18712 * 79.81250 * 3 2 1 8 8 C 1.47166 * 126.88281 * 359.94299 * 7 3 2 9 9 O 1.21632 * 119.99268 * 173.53250 * 8 7 3 10 10 N 1.34774 * 120.00105 * 353.53404 * 8 7 3 11 11 C 1.46497 * 119.99572 * 184.10792 * 10 8 7 12 12 H 1.09000 * 109.47349 * 38.25999 * 11 10 8 13 13 C 1.53006 * 109.47264 * 278.25898 * 11 10 8 14 14 C 1.53001 * 109.46958 * 158.26069 * 11 10 8 15 15 N 1.46901 * 109.47351 * 184.20059 * 14 11 10 16 16 C 1.46899 * 110.99835 * 72.66311 * 15 14 11 17 17 C 1.46898 * 111.00264 * 196.62183 * 15 14 11 18 18 C 1.50702 * 109.47283 * 170.00188 * 17 15 14 19 19 O 1.21294 * 119.99555 * 359.97438 * 18 17 15 20 20 N 1.34773 * 120.00059 * 180.02562 * 18 17 15 21 21 C 1.37094 * 120.00003 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00328 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00120 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00000 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46942 * 90.00154 * 25 23 21 27 27 H 1.48503 * 109.47173 * 209.99958 * 25 23 21 28 28 H 1.48497 * 109.47129 * 330.00303 * 25 23 21 29 29 H 1.09007 * 109.46935 * 185.50281 * 1 2 3 30 30 H 1.08994 * 109.47442 * 305.50313 * 1 2 3 31 31 H 1.09005 * 109.47275 * 65.50701 * 1 2 3 32 32 H 1.09004 * 109.47203 * 240.00577 * 2 1 3 33 33 H 1.08994 * 109.47197 * 119.99879 * 2 1 3 34 34 H 1.08000 * 126.07058 * 180.02562 * 5 4 3 35 35 H 1.08001 * 127.32189 * 180.23288 * 6 5 4 36 36 H 0.97000 * 120.00009 * 4.10951 * 10 8 7 37 37 H 1.09001 * 109.46551 * 60.00158 * 13 11 10 38 38 H 1.09001 * 109.47292 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47021 * 300.00303 * 13 11 10 40 40 H 1.08997 * 109.47455 * 304.20528 * 14 11 10 41 41 H 1.09003 * 109.46886 * 64.20469 * 14 11 10 42 42 H 1.09006 * 109.47008 * 54.65628 * 16 15 14 43 43 H 1.09005 * 109.47231 * 174.64952 * 16 15 14 44 44 H 1.08996 * 109.47634 * 294.65815 * 16 15 14 45 45 H 1.09004 * 109.46947 * 289.99807 * 17 15 14 46 46 H 1.09000 * 109.47354 * 49.99951 * 17 15 14 47 47 H 0.97004 * 120.00186 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00069 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.4404 2.0172 -1.0330 5 6 2.8098 3.2318 -0.7156 6 6 2.6014 3.3984 0.6554 7 6 2.0945 2.1893 1.0988 8 6 1.7089 1.8451 2.4767 9 8 1.9385 2.6216 3.3843 10 7 1.1015 0.6695 2.7328 11 6 0.6368 0.3653 4.0884 12 1 0.2297 1.2679 4.5441 13 6 1.8103 -0.1448 4.9274 14 6 -0.4504 -0.7094 4.0256 15 7 -0.9870 -0.9425 5.3731 16 6 -1.8277 0.1814 5.8067 17 6 -1.7292 -2.2088 5.4325 18 6 -2.0519 -2.5351 6.8679 19 8 -1.6978 -1.7867 7.7543 20 7 -2.7329 -3.6591 7.1668 21 6 -3.0268 -3.9557 8.4726 22 1 -2.7123 -3.2890 9.2618 23 6 -3.7294 -5.1143 8.7807 24 7 -4.0107 -5.3989 10.0324 25 14 -4.2740 -6.2673 7.4156 26 1 -3.2120 -7.2746 7.1654 27 1 -5.5253 -6.9572 7.8201 28 1 -4.5175 -5.4866 6.1761 29 1 -0.3633 -1.0230 0.0986 30 1 -0.3634 0.5968 0.8365 31 1 -0.3634 0.4261 -0.9352 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.2018 3.9750 -1.3941 35 1 2.7965 4.2822 1.2448 36 1 0.9721 0.0250 2.0196 37 1 2.5848 0.6208 4.9721 38 1 1.4644 -0.3716 5.9359 39 1 2.2174 -1.0474 4.4717 40 1 -1.2529 -0.3764 3.3676 41 1 -0.0242 -1.6352 3.6391 42 1 -2.6059 0.3605 5.0646 43 1 -2.2880 -0.0578 6.7653 44 1 -1.2132 1.0756 5.9116 45 1 -2.6548 -2.1143 4.8645 46 1 -1.1212 -3.0067 5.0063 47 1 -3.0157 -4.2579 6.4579 48 1 -4.5015 -6.2075 10.2475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322146842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:22 Heat of formation + Delta-G solvation = 7.915770 kcal Electronic energy + Delta-G solvation = -29385.535574 eV Core-core repulsion = 25284.406366 eV Total energy + Delta-G solvation = -4101.129208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.63817 -40.92542 -40.38133 -38.43330 -36.71801 -35.91619 -35.22021 -33.72063 -32.63831 -31.15339 -30.84780 -29.52769 -28.08691 -26.62734 -25.48560 -24.77398 -23.42931 -22.59344 -21.73072 -21.22968 -21.08522 -20.15250 -19.08678 -17.76010 -17.60552 -17.26546 -16.82193 -16.67781 -16.61672 -16.20210 -15.90132 -15.81905 -15.53701 -15.21916 -14.97509 -14.83634 -14.54971 -14.37125 -14.14493 -14.13814 -13.73860 -13.65374 -13.48406 -13.12866 -13.04641 -12.85812 -12.66638 -12.54223 -12.41174 -12.38215 -12.36786 -11.98769 -11.95935 -11.82240 -11.43688 -11.29399 -10.46972 -10.32613 -10.19819 -10.18705 -10.04352 -9.21408 -8.38066 -5.98713 0.12982 1.31681 1.38357 1.38745 1.46908 1.59069 1.78784 2.01488 2.07475 2.25932 2.72483 3.17955 3.25878 3.32271 3.50812 3.70991 3.83096 4.00812 4.01181 4.11204 4.15008 4.26621 4.27842 4.37909 4.47242 4.49947 4.53889 4.59589 4.67528 4.71711 4.72145 4.75715 4.83143 4.89165 4.99901 5.12901 5.19481 5.28175 5.41303 5.48089 5.56243 5.68603 5.90189 6.01594 6.14038 6.27369 6.63542 6.89094 6.93034 7.01492 7.44584 8.03137 8.79720 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002125 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.487468 B =13174.614963 C =13970.570747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 N -0.271 5.271 4 N -0.286 5.286 5 C -0.005 4.005 6 C -0.169 4.169 7 C -0.061 4.061 8 C 0.592 3.408 9 O -0.559 6.559 10 N -0.711 5.711 11 C 0.150 3.850 12 H 0.068 0.932 13 C -0.148 4.148 14 C 0.053 3.947 15 N -0.533 5.533 16 C 0.025 3.975 17 C 0.057 3.943 18 C 0.450 3.550 19 O -0.606 6.606 20 N -0.593 5.593 21 C -0.325 4.325 22 H 0.053 0.947 23 C -0.020 4.020 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.227 1.227 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.217 0.783 35 H 0.167 0.833 36 H 0.411 0.589 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 8.047 -30.474 32.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 N -0.062 5.062 4 N -0.119 5.119 5 C -0.180 4.180 6 C -0.198 4.198 7 C -0.189 4.189 8 C 0.378 3.622 9 O -0.436 6.436 10 N -0.370 5.370 11 C 0.045 3.955 12 H 0.086 0.914 13 C -0.207 4.207 14 C -0.075 4.075 15 N -0.258 5.258 16 C -0.123 4.123 17 C -0.074 4.074 18 C 0.238 3.762 19 O -0.490 6.490 20 N -0.235 5.235 21 C -0.454 4.454 22 H 0.071 0.929 23 C -0.218 4.218 24 N -0.579 5.579 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.151 1.151 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.233 0.767 35 H 0.184 0.816 36 H 0.254 0.746 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.147 0.853 47 H 0.225 0.775 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.880 8.019 -29.622 32.240 hybrid contribution -1.032 -0.103 0.334 1.089 sum 8.849 7.916 -29.289 31.604 Atomic orbital electron populations 1.22427 0.91989 1.06054 1.03600 1.22601 0.97033 0.76044 1.07318 1.46263 1.44073 1.12809 1.03037 1.73152 1.15762 1.08764 1.14265 1.24119 1.04389 0.94343 0.95170 1.22477 1.03461 0.97692 0.96218 1.21694 1.13112 0.95001 0.89073 1.17135 0.77372 0.81748 0.85978 1.90844 1.55649 1.51256 1.45856 1.46422 1.59685 1.18225 1.12643 1.20813 0.94776 0.98502 0.81387 0.91392 1.21970 0.97186 1.00672 1.00829 1.22370 0.96547 0.99668 0.88907 1.61243 1.37744 1.01738 1.25045 1.22441 0.95785 0.93444 1.00618 1.21861 0.99783 0.93891 0.91891 1.20976 0.81054 0.81827 0.92362 1.90545 1.56503 1.50844 1.51114 1.42021 1.52128 1.22356 1.06997 1.18971 1.34943 1.07498 0.83994 0.92899 1.26160 0.96668 0.99048 0.99897 1.69818 1.40752 1.27243 1.20046 0.85341 0.78706 0.78627 0.78660 1.18107 1.20453 1.15056 0.86067 0.92430 0.91165 0.84824 0.87058 0.76651 0.81567 0.74580 0.94246 0.91756 0.91063 0.91916 0.87200 0.94205 0.92768 0.91671 0.89913 0.85302 0.77458 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.35 71.98 0.67 -0.15 16 2 C 0.09 0.58 6.19 86.38 0.54 1.12 16 3 N -0.27 -4.05 3.36 -334.68 -1.12 -5.17 16 4 N -0.29 -4.80 11.90 -57.14 -0.68 -5.48 16 5 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 6 C -0.17 -3.10 10.85 22.66 0.25 -2.85 16 7 C -0.06 -1.20 6.93 40.79 0.28 -0.91 16 8 C 0.59 13.30 7.71 86.59 0.67 13.97 16 9 O -0.56 -17.26 16.32 -4.13 -0.07 -17.33 16 10 N -0.71 -11.51 4.32 -446.05 -1.93 -13.44 16 11 C 0.15 3.01 2.60 44.99 0.12 3.13 16 12 H 0.07 1.74 6.35 -2.39 -0.02 1.73 16 13 C -0.15 -3.42 9.30 71.98 0.67 -2.75 16 14 C 0.05 0.87 4.55 86.30 0.39 1.26 16 15 N -0.53 -13.97 3.87 -927.03 -3.59 -17.56 16 16 C 0.03 0.73 9.00 127.69 1.15 1.88 16 17 C 0.06 1.49 5.44 85.56 0.47 1.96 16 18 C 0.45 19.11 7.42 87.66 0.65 19.76 16 19 O -0.61 -32.37 13.96 -3.07 -0.04 -32.42 16 20 N -0.59 -26.59 5.09 -306.99 -1.56 -28.16 16 21 C -0.32 -18.61 10.16 84.04 0.85 -17.75 16 22 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 23 C -0.02 -1.07 5.50 84.93 0.47 -0.61 16 24 N -0.94 -56.14 13.96 21.66 0.30 -55.84 16 25 Si 0.97 37.43 27.74 68.60 1.90 39.34 16 26 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.17 6.52 99.48 0.65 -6.52 16 29 H 0.12 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.06 0.45 6.76 -2.39 -0.02 0.43 16 31 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.43 6.21 -2.39 -0.01 0.42 16 34 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.41 3.93 2.98 -92.71 -0.28 3.65 16 37 H 0.04 1.02 7.79 -2.39 -0.02 1.00 16 38 H 0.06 1.81 7.73 -2.39 -0.02 1.80 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 0.79 7.94 -2.39 -0.02 0.78 16 41 H 0.11 1.15 7.80 -2.39 -0.02 1.13 16 42 H 0.04 0.94 8.00 -2.38 -0.02 0.92 16 43 H 0.05 2.06 5.79 -2.38 -0.01 2.05 16 44 H 0.06 1.85 6.87 -2.39 -0.02 1.83 16 45 H 0.08 1.72 8.12 -2.38 -0.02 1.70 16 46 H 0.13 2.49 7.85 -2.39 -0.02 2.47 16 47 H 0.39 14.12 5.76 -92.71 -0.53 13.59 16 48 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -86.02 388.62 1.54 -84.48 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.13 Total: 32.57 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 8.19 Total: 19.00 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -8.58 Total: -125.64 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.74 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.90 Total: 39.34 kcal Total: -86.02 1.54 -84.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322146842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.399 kcal (2) G-P(sol) polarization free energy of solvation -86.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds