Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47209 * 2 1 4 4 N 1.28442 * 125.19051 * 262.74193 * 3 2 1 5 5 C 1.30862 * 110.92520 * 179.97438 * 4 3 2 6 6 C 1.39677 * 107.86109 * 359.77965 * 5 4 3 7 7 C 1.36594 * 125.18867 * 82.72365 * 3 2 1 8 8 C 1.47165 * 126.88219 * 359.97438 * 7 3 2 9 9 O 1.21636 * 119.99843 * 174.14142 * 8 7 3 10 10 N 1.34773 * 120.00267 * 354.13789 * 8 7 3 11 11 C 1.46502 * 120.00056 * 175.08339 * 10 8 7 12 12 H 1.08998 * 109.46962 * 325.31804 * 11 10 8 13 13 C 1.52996 * 109.47148 * 85.31979 * 11 10 8 14 14 C 1.53000 * 109.47143 * 205.31912 * 11 10 8 15 15 N 1.46901 * 109.47190 * 174.81563 * 14 11 10 16 16 C 1.46899 * 111.00053 * 288.13092 * 15 14 11 17 17 C 1.46900 * 110.99826 * 164.17574 * 15 14 11 18 18 C 1.50703 * 109.47094 * 190.00285 * 17 15 14 19 19 O 1.21298 * 119.99552 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00220 * 180.02562 * 18 17 15 21 21 C 1.37096 * 119.99711 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00437 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99508 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99899 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99929 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46985 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47350 * 119.99678 * 25 23 21 28 28 H 1.48498 * 109.47193 * 239.99912 * 25 23 21 29 29 H 1.08993 * 109.47151 * 300.00001 * 1 2 3 30 30 H 1.09001 * 109.46787 * 60.00164 * 1 2 3 31 31 H 1.09006 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.47130 * 239.99978 * 2 1 3 33 33 H 1.08996 * 109.47193 * 120.00640 * 2 1 3 34 34 H 1.08001 * 126.06813 * 180.02562 * 5 4 3 35 35 H 1.07998 * 127.31895 * 180.27736 * 6 5 4 36 36 H 0.97003 * 119.99899 * 354.80925 * 10 8 7 37 37 H 1.08997 * 109.47103 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47101 * 300.00438 * 13 11 10 39 39 H 1.08998 * 109.47332 * 60.00052 * 13 11 10 40 40 H 1.08995 * 109.47457 * 294.82084 * 14 11 10 41 41 H 1.09008 * 109.46830 * 54.82035 * 14 11 10 42 42 H 1.09003 * 109.47251 * 66.76813 * 16 15 14 43 43 H 1.09002 * 109.46754 * 186.76273 * 16 15 14 44 44 H 1.08999 * 109.47097 * 306.76594 * 16 15 14 45 45 H 1.09001 * 109.47303 * 310.00440 * 17 15 14 46 46 H 1.09004 * 109.47109 * 70.00391 * 17 15 14 47 47 H 0.96994 * 119.99357 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99760 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3901 2.0349 -1.0413 5 6 2.7740 3.2444 -0.7215 6 6 2.6320 3.3875 0.6607 7 6 2.1475 2.1705 1.1073 8 6 1.8288 1.8026 2.4962 9 8 2.0917 2.5686 3.4038 10 7 1.2455 0.6172 2.7625 11 6 1.0263 0.2041 4.1509 12 1 1.8464 0.5655 4.7712 13 6 -0.2927 0.7925 4.6558 14 6 0.9651 -1.3228 4.2251 15 7 0.8698 -1.7414 5.6300 16 6 2.1443 -1.5311 6.3295 17 6 0.4369 -3.1413 5.7339 18 6 0.1143 -3.4619 7.1707 19 8 0.2339 -2.6083 8.0241 20 7 -0.3059 -4.6974 7.5075 21 6 -0.5998 -4.9889 8.8145 22 1 -0.4942 -4.2287 9.5742 23 6 -1.0326 -6.2628 9.1618 24 7 -1.1607 -7.1880 8.2373 25 14 -1.4338 -6.6598 10.9425 26 1 -1.2096 -5.4548 11.7809 27 1 -2.8543 -7.0796 11.0482 28 1 -0.5559 -7.7607 11.4141 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.1328 3.9993 -1.4054 35 1 2.8544 4.2616 1.2547 36 1 0.9672 0.0392 2.0348 37 1 -0.4556 0.4855 5.6889 38 1 -0.2492 1.8803 4.6028 39 1 -1.1128 0.4312 4.0354 40 1 0.0908 -1.6784 3.6799 41 1 1.8667 -1.7446 3.7807 42 1 2.3470 -0.4626 6.4021 43 1 2.0841 -1.9583 7.3305 44 1 2.9475 -2.0165 5.7751 45 1 -0.4505 -3.2938 5.1196 46 1 1.2363 -3.7956 5.3863 47 1 -0.4011 -5.3800 6.8250 48 1 -1.4625 -8.0774 8.4798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322146900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = 27.684294 kcal Electronic energy + Delta-G solvation = -29279.363548 eV Core-core repulsion = 25179.091567 eV Total energy + Delta-G solvation = -4100.271980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.95995 -39.93953 -38.69121 -37.12181 -35.84878 -34.54495 -33.81636 -31.77181 -31.27363 -30.42891 -30.17713 -27.97087 -27.01594 -25.06924 -24.71617 -23.91511 -22.42416 -21.90421 -20.85398 -20.28149 -19.21337 -18.38917 -17.89452 -16.67114 -16.54566 -16.16927 -15.91711 -15.55234 -15.46182 -14.90758 -14.72363 -14.67907 -14.35644 -14.14505 -13.74830 -13.61236 -13.50323 -13.43044 -13.19796 -13.03206 -12.70477 -12.52470 -12.18875 -12.03817 -11.88967 -11.55734 -11.46960 -11.40552 -11.32245 -11.23112 -10.99665 -10.81958 -10.36431 -10.34729 -10.25250 -9.60521 -9.51790 -9.50409 -9.30231 -8.50425 -8.02594 -7.94304 -6.45077 -3.85700 0.91057 1.96306 2.27480 2.66734 2.91712 3.14092 3.25152 3.32311 3.81277 3.86226 3.96627 4.16662 4.19752 4.24747 4.47818 4.54256 4.62590 4.84661 4.89910 4.98965 5.05719 5.06880 5.18604 5.22488 5.24071 5.42931 5.48516 5.52991 5.53991 5.63019 5.66605 5.78256 5.88634 5.92976 5.95589 6.13388 6.19913 6.24125 6.30621 6.44905 6.50601 7.04836 7.15929 7.25843 7.52681 7.61896 7.81741 8.03319 8.58186 9.15193 9.50874 10.02428 10.72689 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.001982 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.857304 B =14122.942246 C =14713.284662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 N -0.276 5.276 4 N -0.275 5.275 5 C -0.005 4.005 6 C -0.156 4.156 7 C -0.043 4.043 8 C 0.591 3.409 9 O -0.516 6.516 10 N -0.732 5.732 11 C 0.144 3.856 12 H 0.094 0.906 13 C -0.154 4.154 14 C 0.046 3.954 15 N -0.510 5.510 16 C 0.020 3.980 17 C 0.046 3.954 18 C 0.443 3.557 19 O -0.575 6.575 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.165 0.835 36 H 0.396 0.604 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.015 0.985 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 12.872 -20.712 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 N -0.067 5.067 4 N -0.107 5.107 5 C -0.182 4.182 6 C -0.185 4.185 7 C -0.169 4.169 8 C 0.376 3.624 9 O -0.389 6.389 10 N -0.389 5.389 11 C 0.040 3.960 12 H 0.112 0.888 13 C -0.212 4.212 14 C -0.083 4.083 15 N -0.234 5.234 16 C -0.128 4.128 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.182 0.818 36 H 0.236 0.764 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.034 0.966 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.740 13.190 -20.065 24.475 hybrid contribution 0.272 -1.050 0.191 1.101 sum 5.012 12.140 -19.874 23.822 Atomic orbital electron populations 1.22390 0.92884 1.04706 1.04315 1.22238 0.96320 0.77538 1.05954 1.45936 1.45459 1.12061 1.03208 1.73152 1.16070 1.07588 1.13869 1.23641 1.05052 0.94332 0.95129 1.22229 1.03814 0.97312 0.95176 1.21806 1.12020 0.94256 0.88857 1.16948 0.77693 0.81776 0.85999 1.90861 1.53168 1.49887 1.45010 1.46654 1.62022 1.20242 1.09998 1.21013 1.00154 0.94034 0.80798 0.88800 1.22058 0.95323 1.00454 1.03347 1.22356 1.00881 0.94048 0.90995 1.61408 1.31170 1.20465 1.10393 1.22608 0.87539 1.01573 1.01083 1.21881 1.00477 0.88331 0.97796 1.19694 0.84533 0.83623 0.89292 1.90508 1.57434 1.47124 1.50859 1.41868 1.58364 1.10020 1.09849 1.19749 1.41168 0.96940 0.84850 0.87816 1.25266 0.97412 0.95435 0.99888 1.69619 1.47289 1.04104 1.33341 0.85802 0.77949 0.78572 0.82049 1.19191 1.20752 1.20796 0.91194 0.90474 0.88903 0.86679 0.88138 0.79458 0.81779 0.76434 0.89361 0.92720 0.93030 0.90448 0.94512 0.91804 0.88497 0.96645 0.89348 0.93392 0.77537 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.52 37.16 0.35 -0.48 16 2 C 0.10 0.55 6.19 -4.04 -0.03 0.52 16 3 N -0.28 -2.46 3.35 -57.14 -0.19 -2.65 16 4 N -0.27 -2.66 11.90 30.59 0.36 -2.30 16 5 C -0.01 -0.04 12.03 -17.43 -0.21 -0.25 16 6 C -0.16 -1.52 10.85 -38.99 -0.42 -1.95 16 7 C -0.04 -0.45 6.95 -82.06 -0.57 -1.02 16 8 C 0.59 7.08 7.75 -12.64 -0.10 6.98 16 9 O -0.52 -7.94 16.63 5.25 0.09 -7.86 16 10 N -0.73 -7.11 4.48 -54.96 -0.25 -7.36 16 11 C 0.14 1.66 2.63 -67.93 -0.18 1.48 16 12 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 13 C -0.15 -1.88 9.38 37.16 0.35 -1.54 16 14 C 0.05 0.52 4.55 -3.82 -0.02 0.50 16 15 N -0.51 -7.77 3.92 -244.36 -0.96 -8.72 16 16 C 0.02 0.31 8.98 60.06 0.54 0.85 16 17 C 0.05 0.76 5.44 -4.97 -0.03 0.74 16 18 C 0.44 9.99 7.41 -10.98 -0.08 9.91 16 19 O -0.58 -14.93 13.98 5.54 0.08 -14.85 16 20 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 21 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.07 0.40 6.82 -51.93 -0.35 0.04 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.10 0.46 6.11 -51.93 -0.32 0.15 16 34 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.40 2.83 2.95 -40.82 -0.12 2.71 16 37 H 0.09 1.26 7.76 -51.93 -0.40 0.86 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.73 7.81 -51.93 -0.41 0.33 16 41 H 0.04 0.37 7.94 -51.92 -0.41 -0.04 16 42 H 0.06 0.93 6.88 -51.93 -0.36 0.57 16 43 H 0.10 1.85 5.78 -51.93 -0.30 1.55 16 44 H 0.02 0.21 7.98 -51.93 -0.41 -0.20 16 45 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -33.82 392.73 -6.96 -40.78 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.03 Total: 10.54 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.63 Total: 7.96 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.36 Total: -58.22 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.16 Total: -22.71 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.82 -6.96 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322146900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.468 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds