Wall clock time and date at job start Tue Mar 31 2020 20:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52995 * 109.46968 * 239.99745 * 2 1 3 5 5 N 1.46501 * 109.47059 * 65.00580 * 4 2 1 6 6 C 1.34780 * 119.99776 * 180.02562 * 5 4 2 7 7 O 1.21353 * 120.00296 * 359.97438 * 6 5 4 8 8 C 1.49349 * 119.99612 * 179.97438 * 6 5 4 9 9 O 1.21381 * 119.99807 * 0.02562 * 8 6 5 10 10 N 1.34771 * 119.99593 * 179.97438 * 8 6 5 11 11 C 1.39928 * 119.99890 * 180.02562 * 10 8 6 12 12 C 1.40468 * 125.98023 * 359.71358 * 11 10 8 13 13 C 1.35214 * 107.86693 * 179.86521 * 12 11 10 14 14 N 1.34993 * 107.87558 * 0.39611 * 13 12 11 15 15 C 1.46501 * 125.96987 * 179.72959 * 14 13 12 16 16 C 1.50701 * 109.47097 * 124.99817 * 15 14 13 17 17 H 1.08003 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46914 * 90.00105 * 20 18 16 22 22 H 1.48494 * 109.47462 * 210.00071 * 20 18 16 23 23 H 1.48506 * 109.47326 * 330.00517 * 20 18 16 24 24 N 1.31273 * 125.98516 * 180.02562 * 11 10 8 25 25 C 1.53004 * 109.46849 * 119.99691 * 2 1 3 26 26 N 1.46898 * 109.46811 * 185.20817 * 25 2 1 27 27 C 1.46897 * 110.99979 * 75.75421 * 26 25 2 28 28 C 1.46905 * 110.99795 * 199.71108 * 26 25 2 29 29 H 1.09003 * 109.47040 * 54.90451 * 1 2 3 30 30 H 1.09003 * 109.47367 * 174.90711 * 1 2 3 31 31 H 1.09004 * 109.47320 * 294.91067 * 1 2 3 32 32 H 1.08999 * 109.47123 * 184.99915 * 4 2 1 33 33 H 1.08993 * 109.47409 * 304.99936 * 4 2 1 34 34 H 0.96997 * 120.00057 * 359.97438 * 5 4 2 35 35 H 0.97001 * 120.00677 * 359.97438 * 10 8 6 36 36 H 1.08003 * 126.06235 * 0.02562 * 12 11 10 37 37 H 1.07996 * 126.06193 * 180.11154 * 13 12 11 38 38 H 1.09002 * 109.46777 * 245.00019 * 15 14 13 39 39 H 1.09005 * 109.46853 * 4.99832 * 15 14 13 40 40 H 0.96997 * 119.99835 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47421 * 305.20738 * 25 2 1 42 42 H 1.09003 * 109.46480 * 65.21005 * 25 2 1 43 43 H 1.08995 * 109.47265 * 54.60778 * 27 26 25 44 44 H 1.09001 * 109.47163 * 174.60211 * 27 26 25 45 45 H 1.08999 * 109.46946 * 294.60232 * 27 26 25 46 46 H 1.08995 * 109.47586 * 59.99677 * 28 26 25 47 47 H 1.09002 * 109.46990 * 180.02562 * 28 26 25 48 48 H 1.09006 * 109.46741 * 299.99767 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6525 0.0354 -2.4423 6 6 1.9956 -0.4137 -3.6659 7 8 2.6259 -1.4445 -3.7793 8 6 1.6001 0.3574 -4.8823 9 8 0.9701 1.3887 -4.7688 10 7 1.9436 -0.0914 -6.1058 11 6 1.5736 0.6313 -7.2454 12 6 0.8423 1.8305 -7.2607 13 6 0.6947 2.2100 -8.5501 14 7 1.2994 1.2854 -9.3259 15 6 1.3728 1.3047 -10.7890 16 6 2.8139 1.2158 -11.2209 17 1 3.5968 1.1519 -10.4796 18 6 3.1328 1.2162 -12.5622 19 7 2.1794 1.2946 -13.4648 20 14 4.9191 1.1068 -13.0976 21 1 5.3001 -0.3191 -13.2617 22 1 5.0931 1.8175 -14.3897 23 1 5.7842 1.7347 -12.0667 24 7 1.8440 0.3043 -8.4876 25 6 2.0399 -0.7212 1.2493 26 7 3.5035 -0.6133 1.3138 27 6 3.9138 0.7292 1.7465 28 6 4.0693 -1.6456 2.1927 29 1 -0.3633 0.5909 -0.8409 30 1 -0.3634 -1.0236 -0.0912 31 1 -0.3634 0.4329 0.9321 32 1 3.1262 -0.7995 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 1.1484 0.8591 -2.3517 35 1 2.4481 -0.9149 -6.1964 36 1 0.4670 2.3575 -6.3959 37 1 0.1800 3.0934 -8.8979 38 1 0.8198 0.4561 -11.1917 39 1 0.9381 2.2319 -11.1624 40 1 2.4038 1.2945 -14.4084 41 1 1.6025 -0.2641 2.1368 42 1 1.7547 -1.7723 1.2038 43 1 3.4274 0.9709 2.6915 44 1 4.9956 0.7538 1.8782 45 1 3.6231 1.4591 0.9910 46 1 3.8081 -2.6320 1.8095 47 1 5.1540 -1.5426 2.2227 48 1 3.6655 -1.5278 3.1983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324968873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:36 Heat of formation + Delta-G solvation = 17.361700 kcal Electronic energy + Delta-G solvation = -28143.084188 eV Core-core repulsion = 24042.364587 eV Total energy + Delta-G solvation = -4100.719602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04551 -40.19664 -38.89055 -38.20468 -36.04244 -34.89914 -33.39067 -32.97863 -31.02288 -29.39719 -28.05675 -27.65310 -27.43429 -26.64465 -24.56597 -22.89041 -22.53342 -21.23273 -20.81604 -20.23311 -19.58868 -18.24769 -17.03068 -16.61114 -16.45793 -16.35904 -16.04217 -15.91258 -15.40176 -15.11562 -15.08017 -14.78264 -14.42808 -14.09749 -14.02071 -13.63372 -13.39312 -13.15872 -12.93362 -12.87998 -12.57369 -12.39665 -12.28372 -12.21937 -12.13624 -11.87546 -11.56885 -11.55112 -11.45528 -11.07071 -11.04000 -10.87054 -10.51651 -10.26290 -10.01337 -9.54564 -9.51344 -9.42888 -8.83981 -8.63766 -8.21112 -7.56216 -6.24897 -4.30000 1.26202 2.11975 2.69318 3.07610 3.24127 3.25071 3.30782 3.36677 3.42776 3.69351 3.89543 4.22954 4.31431 4.39058 4.47661 4.58208 4.72494 4.85214 4.94230 4.97532 5.08337 5.10502 5.17926 5.25113 5.31242 5.38849 5.44043 5.44514 5.47318 5.60599 5.73325 5.75379 5.80132 6.02756 6.12812 6.34522 6.43222 6.51180 6.51480 6.80661 6.95704 7.03555 7.26946 7.40069 7.66942 7.71853 7.86504 7.98812 7.99750 8.55976 8.78765 9.35898 10.83886 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001795 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.833582 B =15595.497930 C =16358.883594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.128 3.872 5 N -0.700 5.700 6 C 0.515 3.485 7 O -0.515 6.515 8 C 0.512 3.488 9 O -0.502 6.502 10 N -0.599 5.599 11 C 0.251 3.749 12 C -0.286 4.286 13 C 0.053 3.947 14 N -0.315 5.315 15 C 0.257 3.743 16 C -0.530 4.530 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.295 5.295 25 C 0.061 3.939 26 N -0.548 5.548 27 C 0.022 3.978 28 C 0.024 3.976 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -1.638 31.464 31.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.119 4.119 3 H 0.099 0.901 4 C 0.005 3.995 5 N -0.354 5.354 6 C 0.295 3.705 7 O -0.390 6.390 8 C 0.292 3.708 9 O -0.375 6.375 10 N -0.247 5.247 11 C -0.002 4.002 12 C -0.317 4.317 13 C -0.097 4.097 14 N -0.097 5.097 15 C 0.140 3.860 16 C -0.568 4.568 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.126 5.126 25 C -0.068 4.068 26 N -0.271 5.271 27 C -0.127 4.127 28 C -0.124 4.124 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.938 -2.581 29.917 30.091 hybrid contribution 0.251 0.661 0.857 1.111 sum -1.687 -1.919 30.774 30.879 Atomic orbital electron populations 1.21887 0.94214 1.02627 1.02302 1.21380 0.95918 1.00537 0.94027 0.90101 1.21515 1.01774 0.94634 0.81564 1.45750 1.56491 1.28140 1.04991 1.19840 0.80714 0.85463 0.84512 1.90794 1.38269 1.23426 1.86526 1.19979 0.81062 0.85770 0.83975 1.90697 1.37801 1.23001 1.85995 1.42008 1.53717 1.26499 1.02466 1.19023 1.00717 0.93982 0.86471 1.21515 1.12865 0.99864 0.97451 1.22577 0.99717 0.96448 0.90955 1.49164 1.37507 1.14731 1.08261 1.19798 0.99551 0.99405 0.67273 1.21255 0.91292 1.51928 0.92344 0.91239 1.24940 0.98460 0.94540 0.96097 1.69914 1.32373 1.49570 1.01449 0.86316 0.83794 0.78424 0.77908 1.20290 1.20989 1.19699 1.77405 1.22850 1.14539 0.97820 1.22161 0.87168 1.01127 0.96298 1.61935 1.09635 1.04111 1.51465 1.22455 1.01122 0.90244 0.98836 1.22406 1.00342 0.95462 0.94194 0.91913 0.92122 0.92264 0.89356 0.91207 0.75205 0.73942 0.82169 0.81259 0.93554 0.92376 0.92306 0.93812 0.90382 0.95577 0.91329 0.91097 0.91144 0.91216 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.00 37.16 0.33 -0.40 16 2 C -0.10 -0.54 2.48 -90.62 -0.22 -0.77 16 3 H 0.08 0.45 6.88 -51.93 -0.36 0.09 16 4 C 0.13 1.02 5.01 -4.04 -0.02 1.00 16 5 N -0.70 -6.62 5.32 -60.77 -0.32 -6.94 16 6 C 0.51 6.59 7.89 -11.63 -0.09 6.50 16 7 O -0.52 -7.70 16.48 5.49 0.09 -7.61 16 8 C 0.51 7.62 7.85 -11.64 -0.09 7.53 16 9 O -0.50 -7.94 13.60 5.47 0.07 -7.87 16 10 N -0.60 -9.98 5.43 -11.58 -0.06 -10.04 16 11 C 0.25 5.06 8.10 -154.55 -1.25 3.81 16 12 C -0.29 -5.48 9.60 -39.82 -0.38 -5.86 16 13 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 14 N -0.31 -7.24 3.67 -62.56 -0.23 -7.47 16 15 C 0.26 6.48 6.26 -5.19 -0.03 6.45 16 16 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 17 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 20 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 N -0.29 -6.83 12.42 31.41 0.39 -6.44 16 25 C 0.06 0.31 4.39 -3.82 -0.02 0.30 16 26 N -0.55 -3.35 4.33 -251.26 -1.09 -4.44 16 27 C 0.02 0.11 9.41 60.06 0.57 0.68 16 28 C 0.02 0.12 9.51 60.07 0.57 0.69 16 29 H 0.06 0.33 7.31 -51.93 -0.38 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.84 7.63 -51.93 -0.40 0.44 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 3.37 7.15 -40.82 -0.29 3.08 16 35 H 0.42 6.52 8.29 -40.82 -0.34 6.18 16 36 H 0.16 2.88 5.91 -52.48 -0.31 2.57 16 37 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.04 0.20 7.88 -51.93 -0.41 -0.20 16 42 H 0.08 0.38 7.89 -51.93 -0.41 -0.03 16 43 H 0.03 0.12 7.97 -51.93 -0.41 -0.29 16 44 H 0.07 0.35 8.03 -51.93 -0.42 -0.07 16 45 H 0.07 0.38 6.98 -51.93 -0.36 0.02 16 46 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 47 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 48 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -32.22 402.03 -8.05 -40.27 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.42 Total: 5.23 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.25 Total: 7.33 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.58 Total: -59.84 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.16 Total: -15.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.22 -8.05 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324968873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.633 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds