Wall clock time and date at job start Tue Mar 31 2020 20:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52995 * 109.46968 * 239.99745 * 2 1 3 5 5 N 1.46501 * 109.47059 * 65.00580 * 4 2 1 6 6 C 1.34780 * 119.99776 * 180.02562 * 5 4 2 7 7 O 1.21353 * 120.00296 * 359.97438 * 6 5 4 8 8 C 1.49349 * 119.99612 * 179.97438 * 6 5 4 9 9 O 1.21381 * 119.99807 * 0.02562 * 8 6 5 10 10 N 1.34771 * 119.99593 * 179.97438 * 8 6 5 11 11 C 1.39928 * 119.99890 * 180.02562 * 10 8 6 12 12 C 1.40468 * 125.98023 * 359.71358 * 11 10 8 13 13 C 1.35214 * 107.86693 * 179.86521 * 12 11 10 14 14 N 1.34993 * 107.87558 * 0.39611 * 13 12 11 15 15 C 1.46501 * 125.96987 * 179.72959 * 14 13 12 16 16 C 1.50701 * 109.47097 * 124.99817 * 15 14 13 17 17 H 1.08003 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46914 * 90.00105 * 20 18 16 22 22 H 1.48494 * 109.47462 * 210.00071 * 20 18 16 23 23 H 1.48506 * 109.47326 * 330.00517 * 20 18 16 24 24 N 1.31273 * 125.98516 * 180.02562 * 11 10 8 25 25 C 1.53004 * 109.46849 * 119.99691 * 2 1 3 26 26 N 1.46898 * 109.46811 * 185.20817 * 25 2 1 27 27 C 1.46897 * 110.99979 * 75.75421 * 26 25 2 28 28 C 1.46905 * 110.99795 * 199.71108 * 26 25 2 29 29 H 1.09003 * 109.47040 * 54.90451 * 1 2 3 30 30 H 1.09003 * 109.47367 * 174.90711 * 1 2 3 31 31 H 1.09004 * 109.47320 * 294.91067 * 1 2 3 32 32 H 1.08999 * 109.47123 * 184.99915 * 4 2 1 33 33 H 1.08993 * 109.47409 * 304.99936 * 4 2 1 34 34 H 0.96997 * 120.00057 * 359.97438 * 5 4 2 35 35 H 0.97001 * 120.00677 * 359.97438 * 10 8 6 36 36 H 1.08003 * 126.06235 * 0.02562 * 12 11 10 37 37 H 1.07996 * 126.06193 * 180.11154 * 13 12 11 38 38 H 1.09002 * 109.46777 * 245.00019 * 15 14 13 39 39 H 1.09005 * 109.46853 * 4.99832 * 15 14 13 40 40 H 0.96997 * 119.99835 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47421 * 305.20738 * 25 2 1 42 42 H 1.09003 * 109.46480 * 65.21005 * 25 2 1 43 43 H 1.08995 * 109.47265 * 54.60778 * 27 26 25 44 44 H 1.09001 * 109.47163 * 174.60211 * 27 26 25 45 45 H 1.08999 * 109.46946 * 294.60232 * 27 26 25 46 46 H 1.08995 * 109.47586 * 59.99677 * 28 26 25 47 47 H 1.09002 * 109.46990 * 180.02562 * 28 26 25 48 48 H 1.09006 * 109.46741 * 299.99767 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6525 0.0354 -2.4423 6 6 1.9956 -0.4137 -3.6659 7 8 2.6259 -1.4445 -3.7793 8 6 1.6001 0.3574 -4.8823 9 8 0.9701 1.3887 -4.7688 10 7 1.9436 -0.0914 -6.1058 11 6 1.5736 0.6313 -7.2454 12 6 0.8423 1.8305 -7.2607 13 6 0.6947 2.2100 -8.5501 14 7 1.2994 1.2854 -9.3259 15 6 1.3728 1.3047 -10.7890 16 6 2.8139 1.2158 -11.2209 17 1 3.5968 1.1519 -10.4796 18 6 3.1328 1.2162 -12.5622 19 7 2.1794 1.2946 -13.4648 20 14 4.9191 1.1068 -13.0976 21 1 5.3001 -0.3191 -13.2617 22 1 5.0931 1.8175 -14.3897 23 1 5.7842 1.7347 -12.0667 24 7 1.8440 0.3043 -8.4876 25 6 2.0399 -0.7212 1.2493 26 7 3.5035 -0.6133 1.3138 27 6 3.9138 0.7292 1.7465 28 6 4.0693 -1.6456 2.1927 29 1 -0.3633 0.5909 -0.8409 30 1 -0.3634 -1.0236 -0.0912 31 1 -0.3634 0.4329 0.9321 32 1 3.1262 -0.7995 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 1.1484 0.8591 -2.3517 35 1 2.4481 -0.9149 -6.1964 36 1 0.4670 2.3575 -6.3959 37 1 0.1800 3.0934 -8.8979 38 1 0.8198 0.4561 -11.1917 39 1 0.9381 2.2319 -11.1624 40 1 2.4038 1.2945 -14.4084 41 1 1.6025 -0.2641 2.1368 42 1 1.7547 -1.7723 1.2038 43 1 3.4274 0.9709 2.6915 44 1 4.9956 0.7538 1.8782 45 1 3.6231 1.4591 0.9910 46 1 3.8081 -2.6320 1.8095 47 1 5.1540 -1.5426 2.2227 48 1 3.6655 -1.5278 3.1983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324968873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:35 Heat of formation + Delta-G solvation = -5.453124 kcal Electronic energy + Delta-G solvation = -28144.073513 eV Core-core repulsion = 24042.364587 eV Total energy + Delta-G solvation = -4101.708927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43202 -41.50670 -39.84014 -38.97075 -36.89818 -36.20286 -35.29247 -33.72038 -32.82574 -31.01088 -28.97661 -28.44450 -28.04748 -27.81584 -25.82751 -24.51752 -23.12715 -22.55717 -21.82692 -21.37969 -20.77700 -19.37927 -18.70298 -18.25923 -17.77114 -17.29137 -16.97555 -16.87465 -16.52512 -16.20039 -16.01927 -15.82446 -15.58254 -15.37425 -15.14374 -14.62328 -14.55297 -14.23195 -13.86798 -13.82885 -13.81201 -13.68621 -13.25244 -13.05212 -13.00563 -12.80139 -12.63581 -12.61300 -12.52260 -12.30670 -12.13263 -12.07010 -11.94452 -11.64030 -11.51505 -11.42417 -10.77447 -10.71910 -10.29614 -9.82517 -9.25395 -9.20687 -8.33525 -6.46958 0.07624 0.89460 1.15211 1.38142 1.39640 1.50444 1.76809 1.87292 2.28199 2.34523 2.63185 2.98810 3.03649 3.28423 3.73082 3.92339 3.97660 4.10317 4.23286 4.31772 4.45586 4.52385 4.56648 4.64760 4.69518 4.74604 4.78843 4.84822 4.87488 4.89292 4.92171 4.96513 5.03627 5.06224 5.07178 5.07819 5.12195 5.30297 5.41198 5.56416 5.75719 5.79664 5.87576 6.11594 6.11834 6.19169 6.26592 6.58850 6.64576 6.82851 6.97618 7.22948 8.74270 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001795 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.833582 B =15595.497930 C =16358.883594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.084 0.916 4 C 0.129 3.871 5 N -0.679 5.679 6 C 0.522 3.478 7 O -0.538 6.538 8 C 0.517 3.483 9 O -0.507 6.507 10 N -0.601 5.601 11 C 0.258 3.742 12 C -0.287 4.287 13 C 0.061 3.939 14 N -0.339 5.339 15 C 0.271 3.729 16 C -0.549 4.549 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.919 5.919 20 Si 0.970 3.030 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 N -0.342 5.342 25 C 0.063 3.937 26 N -0.565 5.565 27 C 0.022 3.978 28 C 0.024 3.976 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.420 0.580 35 H 0.427 0.573 36 H 0.177 0.823 37 H 0.207 0.793 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.273 0.727 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -0.885 33.251 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.102 0.898 4 C 0.007 3.993 5 N -0.332 5.332 6 C 0.301 3.699 7 O -0.416 6.416 8 C 0.298 3.702 9 O -0.380 6.380 10 N -0.251 5.251 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.088 4.088 14 N -0.122 5.122 15 C 0.152 3.848 16 C -0.587 4.587 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.557 5.557 20 Si 0.794 3.206 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.174 5.174 25 C -0.066 4.066 26 N -0.289 5.289 27 C -0.126 4.126 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.258 0.742 35 H 0.266 0.734 36 H 0.194 0.806 37 H 0.224 0.776 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.031 -1.807 31.762 31.878 hybrid contribution 0.222 0.440 0.468 0.680 sum -1.809 -1.367 32.229 32.309 Atomic orbital electron populations 1.21875 0.93417 1.02685 1.02854 1.21318 0.96419 1.00330 0.92797 0.89783 1.21619 1.01088 0.94846 0.81726 1.45750 1.55065 1.28135 1.04290 1.19446 0.80870 0.84998 0.84613 1.90796 1.39718 1.24382 1.86680 1.20386 0.80221 0.85622 0.83961 1.90676 1.37898 1.23343 1.86126 1.42132 1.54156 1.26648 1.02144 1.19342 0.99462 0.94211 0.86592 1.21758 1.12646 0.99542 0.97863 1.23253 0.98342 0.96536 0.90667 1.48908 1.39485 1.16132 1.07639 1.19393 0.97933 0.98477 0.68960 1.21403 0.92205 1.52626 0.92483 0.93031 1.25704 1.02448 0.93925 0.95993 1.69983 1.34117 1.49771 1.01861 0.85373 0.78917 0.78491 0.77783 1.19975 1.19570 1.19806 1.77318 1.25010 1.15910 0.99112 1.22157 0.86782 1.01335 0.96279 1.61942 1.10242 1.04612 1.52106 1.22450 1.01196 0.89905 0.99050 1.22404 1.00348 0.95226 0.94376 0.92203 0.92173 0.91053 0.90617 0.91287 0.74174 0.73440 0.80590 0.77592 0.95923 0.91863 0.91824 0.92842 0.90140 0.94956 0.91383 0.91252 0.91150 0.91257 0.95102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.00 71.98 0.65 -0.46 16 2 C -0.09 -0.80 2.48 -10.79 -0.03 -0.83 16 3 H 0.08 0.74 6.88 -2.39 -0.02 0.72 16 4 C 0.13 1.88 5.01 86.38 0.43 2.31 16 5 N -0.68 -11.78 5.32 -464.53 -2.47 -14.25 16 6 C 0.52 12.80 7.89 87.24 0.69 13.49 16 7 O -0.54 -15.79 16.48 -3.26 -0.05 -15.85 16 8 C 0.52 14.83 7.85 87.24 0.69 15.52 16 9 O -0.51 -15.19 13.60 -3.34 -0.05 -15.23 16 10 N -0.60 -19.87 5.43 -308.90 -1.68 -21.55 16 11 C 0.26 10.36 8.10 133.40 1.08 11.44 16 12 C -0.29 -10.66 9.60 22.12 0.21 -10.45 16 13 C 0.06 2.29 11.43 83.51 0.95 3.24 16 14 N -0.34 -15.77 3.67 -351.84 -1.29 -17.07 16 15 C 0.27 13.95 6.26 85.63 0.54 14.49 16 16 C -0.55 -31.05 9.24 25.60 0.24 -30.82 16 17 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 18 C 0.02 1.10 5.46 84.65 0.46 1.56 16 19 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 20 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 N -0.34 -16.14 12.42 -54.53 -0.68 -16.82 16 25 C 0.06 0.53 4.39 86.30 0.38 0.91 16 26 N -0.56 -6.14 4.33 -948.84 -4.11 -10.25 16 27 C 0.02 0.20 9.41 127.69 1.20 1.41 16 28 C 0.02 0.22 9.51 127.69 1.21 1.43 16 29 H 0.06 0.49 7.31 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.08 1.36 7.63 -2.39 -0.02 1.35 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.42 6.01 7.15 -92.71 -0.66 5.34 16 35 H 0.43 13.27 8.29 -92.71 -0.77 12.50 16 36 H 0.18 5.94 5.91 -2.91 -0.02 5.92 16 37 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 38 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 3.14 8.07 -2.38 -0.02 3.12 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.05 0.37 7.88 -2.39 -0.02 0.35 16 42 H 0.08 0.65 7.89 -2.39 -0.02 0.63 16 43 H 0.03 0.25 7.97 -2.39 -0.02 0.23 16 44 H 0.07 0.62 8.03 -2.39 -0.02 0.60 16 45 H 0.07 0.64 6.98 -2.39 -0.02 0.63 16 46 H 0.07 0.62 8.07 -2.39 -0.02 0.60 16 47 H 0.07 0.61 8.06 -2.39 -0.02 0.59 16 48 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 Total: -1.00 -68.82 402.03 0.25 -68.57 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.44 Total: 24.87 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 8.70 Total: 23.23 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -9.94 Total: -131.58 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.10 Total: -31.08 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.82 0.25 -68.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324968873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.117 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds