Wall clock time and date at job start Tue Mar 31 2020 20:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47223 * 120.00162 * 2 1 3 5 5 N 1.46495 * 109.47452 * 295.00233 * 4 2 1 6 6 C 1.34778 * 120.00367 * 180.02562 * 5 4 2 7 7 O 1.21361 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.49338 * 120.00273 * 179.97438 * 6 5 4 9 9 O 1.21389 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00038 * 179.97438 * 8 6 5 11 11 C 1.39936 * 119.99877 * 179.97438 * 10 8 6 12 12 C 1.40453 * 125.98062 * 359.97438 * 11 10 8 13 13 C 1.35215 * 107.86384 * 179.73491 * 12 11 10 14 14 N 1.34979 * 107.87970 * 0.42460 * 13 12 11 15 15 C 1.46500 * 125.97555 * 179.83561 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71172 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31273 * 125.97577 * 179.97438 * 11 10 8 25 25 C 1.52996 * 109.46808 * 240.00286 * 2 1 3 26 26 N 1.46904 * 109.47387 * 65.00170 * 25 2 1 27 27 C 1.46898 * 111.00071 * 66.04144 * 26 25 2 28 28 C 1.46898 * 111.00118 * 189.99978 * 26 25 2 29 29 H 1.08998 * 109.47389 * 59.99751 * 1 2 3 30 30 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46865 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47185 * 174.99733 * 4 2 1 33 33 H 1.09002 * 109.46708 * 55.00177 * 4 2 1 34 34 H 0.96999 * 119.99985 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00451 * 0.02562 * 10 8 6 36 36 H 1.08000 * 126.07021 * 359.97438 * 12 11 10 37 37 H 1.08004 * 126.05929 * 180.25923 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.71934 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71705 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 41 41 H 1.08997 * 109.46954 * 184.99819 * 25 2 1 42 42 H 1.08997 * 109.47664 * 304.99911 * 25 2 1 43 43 H 1.09007 * 109.47002 * 60.00282 * 27 26 25 44 44 H 1.08996 * 109.47397 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.47248 * 300.00540 * 27 26 25 46 46 H 1.09002 * 109.46893 * 60.00106 * 28 26 25 47 47 H 1.09000 * 109.46974 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.47270 * 299.99953 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4424 6 6 1.9965 -0.4133 3.6659 7 8 2.6270 -1.4441 3.7792 8 6 1.6019 0.3582 4.8822 9 8 0.9709 1.3890 4.7689 10 7 1.9455 -0.0906 6.1057 11 6 1.5762 0.6326 7.2453 12 6 0.8511 1.8354 7.2603 13 6 0.6945 2.2093 8.5503 14 7 1.3035 1.2875 9.3258 15 6 1.3778 1.3072 10.7887 16 6 0.8292 0.0151 11.3371 17 1 0.4622 -0.7448 10.6632 18 6 0.7956 -0.1968 12.6990 19 7 1.2474 0.7265 13.5195 20 14 0.1162 -1.7986 13.3787 21 1 -1.3417 -1.6543 13.6217 22 1 0.3491 -2.8902 12.3993 23 1 0.8009 -2.1247 14.6554 24 7 1.8469 0.3055 8.4875 25 6 2.0399 -0.7212 -1.2493 26 7 1.6513 0.0376 -2.4457 27 6 2.3340 1.3375 -2.4894 28 6 1.9123 -0.7356 -3.6672 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 1.2055 33 1 1.6054 -1.7198 1.2950 34 1 1.1489 0.8592 2.3518 35 1 2.4494 -0.9144 6.1963 36 1 0.4807 2.3654 6.3953 37 1 0.1766 3.0908 8.8983 38 1 0.7910 2.1424 11.1712 39 1 2.4167 1.4212 11.0983 40 1 1.6005 1.5582 13.1666 41 1 3.1262 -0.7994 -1.2057 42 1 1.6053 -1.7197 -1.2953 43 1 3.4126 1.1810 -2.5099 44 1 2.0280 1.8787 -3.3847 45 1 2.0678 1.9176 -1.6059 46 1 1.3394 -1.6625 -3.6398 47 1 1.6152 -0.1508 -4.5377 48 1 2.9755 -0.9672 -3.7303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324968876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:38 Heat of formation + Delta-G solvation = 15.610303 kcal Electronic energy + Delta-G solvation = -28002.217578 eV Core-core repulsion = 23901.422030 eV Total energy + Delta-G solvation = -4100.795548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16163 -40.32230 -38.97788 -38.33149 -36.16858 -35.02506 -33.72441 -32.93827 -30.99151 -29.49920 -28.12828 -27.65767 -27.43872 -26.41582 -24.68131 -23.03830 -22.50861 -21.32965 -20.84385 -20.35555 -19.69094 -18.39888 -17.23433 -17.12788 -16.50859 -16.47302 -16.18231 -15.89263 -15.43726 -15.15664 -15.10663 -14.93001 -14.40560 -14.12528 -13.91300 -13.80159 -13.48508 -13.30055 -13.04746 -12.91546 -12.54563 -12.49961 -12.33771 -12.23825 -12.20985 -12.02514 -11.56930 -11.52678 -11.40184 -11.19089 -11.11555 -10.84933 -10.59108 -10.18033 -10.10747 -9.64018 -9.57896 -9.04633 -8.89077 -8.59870 -8.32295 -7.65217 -6.60480 -4.34805 1.14774 1.98349 2.57000 2.96046 3.07390 3.36407 3.40874 3.42220 3.57636 3.58570 3.77750 4.24212 4.29310 4.39570 4.41196 4.45243 4.66286 4.83739 4.92342 4.94175 5.00031 5.13183 5.14872 5.22265 5.28916 5.32241 5.36974 5.40833 5.43832 5.57808 5.60848 5.71935 5.87500 5.96614 6.00455 6.22938 6.31450 6.46095 6.46756 6.50119 6.69408 6.83322 7.15624 7.26592 7.54365 7.65531 7.75211 7.88575 8.31439 8.43521 8.58537 9.33423 10.77371 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.001655 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.200702 B =16912.213051 C =17371.396738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.122 3.878 5 N -0.698 5.698 6 C 0.516 3.484 7 O -0.515 6.515 8 C 0.513 3.487 9 O -0.500 6.500 10 N -0.598 5.598 11 C 0.252 3.748 12 C -0.283 4.283 13 C 0.053 3.947 14 N -0.313 5.313 15 C 0.248 3.752 16 C -0.610 4.610 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 1.079 2.921 21 H -0.285 1.285 22 H -0.286 1.286 23 H -0.281 1.281 24 N -0.292 5.292 25 C 0.061 3.939 26 N -0.544 5.544 27 C 0.018 3.982 28 C 0.024 3.976 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 0.873 -32.320 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.352 5.352 6 C 0.296 3.704 7 O -0.390 6.390 8 C 0.293 3.707 9 O -0.373 6.373 10 N -0.247 5.247 11 C -0.001 4.001 12 C -0.314 4.314 13 C -0.097 4.097 14 N -0.095 5.095 15 C 0.130 3.870 16 C -0.648 4.648 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.540 5.540 20 Si 0.906 3.094 21 H -0.212 1.212 22 H -0.212 1.212 23 H -0.207 1.207 24 N -0.123 5.123 25 C -0.067 4.067 26 N -0.268 5.268 27 C -0.130 4.130 28 C -0.124 4.124 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.251 0.749 35 H 0.261 0.739 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.673 -0.725 -30.018 30.034 hybrid contribution 0.853 1.284 -1.938 2.476 sum 1.526 0.560 -31.956 31.997 Atomic orbital electron populations 1.21774 0.93470 1.02382 1.02331 1.21411 0.97831 1.00289 0.92622 0.90033 1.21501 1.00459 0.95622 0.82606 1.45667 1.56598 1.28203 1.04733 1.19853 0.80631 0.85421 0.84502 1.90799 1.38314 1.23352 1.86536 1.19931 0.81088 0.85780 0.83929 1.90709 1.37568 1.23043 1.85968 1.41998 1.53806 1.26449 1.02421 1.19018 1.00922 0.93690 0.86429 1.21526 1.12675 0.99819 0.97427 1.22581 0.99584 0.96583 0.90938 1.48869 1.38262 1.14564 1.07763 1.19816 0.98385 0.99967 0.68845 1.22135 1.45885 1.01978 0.94791 0.91723 1.25926 0.95081 1.04152 0.92929 1.70828 1.37887 1.07470 1.37801 0.83383 0.76303 0.73914 0.75780 1.21189 1.21193 1.20686 1.77434 1.23670 1.13438 0.97744 1.22083 0.98163 0.97421 0.89082 1.61926 1.58250 1.04297 1.02277 1.22475 0.96144 0.91327 1.03024 1.22385 0.99248 0.98578 0.92208 0.91010 0.92574 0.92844 0.90877 0.90530 0.74872 0.73884 0.81994 0.81238 0.93456 0.94592 0.92248 0.94325 0.90168 0.95551 0.91319 0.90925 0.91225 0.91255 0.95609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.95 37.16 0.33 -0.49 16 2 C -0.10 -0.55 2.34 -90.62 -0.21 -0.76 16 3 H 0.08 0.43 6.34 -51.93 -0.33 0.10 16 4 C 0.12 0.85 5.06 -4.04 -0.02 0.83 16 5 N -0.70 -6.18 5.28 -60.77 -0.32 -6.50 16 6 C 0.52 6.29 7.89 -11.64 -0.09 6.20 16 7 O -0.51 -7.33 16.48 5.49 0.09 -7.24 16 8 C 0.51 7.41 7.85 -11.64 -0.09 7.32 16 9 O -0.50 -7.74 13.60 5.46 0.07 -7.66 16 10 N -0.60 -9.78 5.43 -11.58 -0.06 -9.84 16 11 C 0.25 5.05 8.10 -154.55 -1.25 3.80 16 12 C -0.28 -5.38 9.60 -39.82 -0.38 -5.77 16 13 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 14 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 15 C 0.25 6.20 5.57 -5.19 -0.03 6.17 16 16 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 17 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 19 N -0.90 -26.19 13.65 55.43 0.76 -25.44 16 20 Si 1.08 24.97 29.90 -169.99 -5.08 19.89 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 N -0.29 -6.76 12.42 31.41 0.39 -6.37 16 25 C 0.06 0.31 4.35 -3.82 -0.02 0.30 16 26 N -0.54 -2.98 4.47 -251.26 -1.12 -4.10 16 27 C 0.02 0.09 9.33 60.06 0.56 0.65 16 28 C 0.02 0.11 9.57 60.06 0.57 0.68 16 29 H 0.07 0.45 7.75 -51.93 -0.40 0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 7.18 -51.93 -0.37 -0.05 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.41 3.23 7.12 -40.82 -0.29 2.93 16 35 H 0.42 6.37 8.29 -40.82 -0.34 6.03 16 36 H 0.16 2.87 5.91 -52.49 -0.31 2.55 16 37 H 0.17 2.62 8.06 -52.48 -0.42 2.19 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 40 H 0.27 7.55 7.22 -40.82 -0.29 7.25 16 41 H 0.04 0.20 8.12 -51.93 -0.42 -0.22 16 42 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 43 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 44 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 45 H 0.07 0.34 6.37 -51.93 -0.33 0.01 16 46 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 47 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 48 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -33.01 400.23 -8.06 -41.07 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.35 Total: 4.67 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.24 Total: 2.92 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.59 Total: -59.68 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.16 Total: -14.90 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.01 -8.06 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324968876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds