Wall clock time and date at job start Tue Mar 31 2020 20:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47223 * 120.00162 * 2 1 3 5 5 N 1.46495 * 109.47452 * 295.00233 * 4 2 1 6 6 C 1.34778 * 120.00367 * 180.02562 * 5 4 2 7 7 O 1.21361 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.49338 * 120.00273 * 179.97438 * 6 5 4 9 9 O 1.21389 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00038 * 179.97438 * 8 6 5 11 11 C 1.39936 * 119.99877 * 179.97438 * 10 8 6 12 12 C 1.40453 * 125.98062 * 359.97438 * 11 10 8 13 13 C 1.35215 * 107.86384 * 179.73491 * 12 11 10 14 14 N 1.34979 * 107.87970 * 0.42460 * 13 12 11 15 15 C 1.46500 * 125.97555 * 179.83561 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71172 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31273 * 125.97577 * 179.97438 * 11 10 8 25 25 C 1.52996 * 109.46808 * 240.00286 * 2 1 3 26 26 N 1.46904 * 109.47387 * 65.00170 * 25 2 1 27 27 C 1.46898 * 111.00071 * 66.04144 * 26 25 2 28 28 C 1.46898 * 111.00118 * 189.99978 * 26 25 2 29 29 H 1.08998 * 109.47389 * 59.99751 * 1 2 3 30 30 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46865 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47185 * 174.99733 * 4 2 1 33 33 H 1.09002 * 109.46708 * 55.00177 * 4 2 1 34 34 H 0.96999 * 119.99985 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00451 * 0.02562 * 10 8 6 36 36 H 1.08000 * 126.07021 * 359.97438 * 12 11 10 37 37 H 1.08004 * 126.05929 * 180.25923 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.71934 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71705 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 41 41 H 1.08997 * 109.46954 * 184.99819 * 25 2 1 42 42 H 1.08997 * 109.47664 * 304.99911 * 25 2 1 43 43 H 1.09007 * 109.47002 * 60.00282 * 27 26 25 44 44 H 1.08996 * 109.47397 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.47248 * 300.00540 * 27 26 25 46 46 H 1.09002 * 109.46893 * 60.00106 * 28 26 25 47 47 H 1.09000 * 109.46974 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.47270 * 299.99953 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4424 6 6 1.9965 -0.4133 3.6659 7 8 2.6270 -1.4441 3.7792 8 6 1.6019 0.3582 4.8822 9 8 0.9709 1.3890 4.7689 10 7 1.9455 -0.0906 6.1057 11 6 1.5762 0.6326 7.2453 12 6 0.8511 1.8354 7.2603 13 6 0.6945 2.2093 8.5503 14 7 1.3035 1.2875 9.3258 15 6 1.3778 1.3072 10.7887 16 6 0.8292 0.0151 11.3371 17 1 0.4622 -0.7448 10.6632 18 6 0.7956 -0.1968 12.6990 19 7 1.2474 0.7265 13.5195 20 14 0.1162 -1.7986 13.3787 21 1 -1.3417 -1.6543 13.6217 22 1 0.3491 -2.8902 12.3993 23 1 0.8009 -2.1247 14.6554 24 7 1.8469 0.3055 8.4875 25 6 2.0399 -0.7212 -1.2493 26 7 1.6513 0.0376 -2.4457 27 6 2.3340 1.3375 -2.4894 28 6 1.9123 -0.7356 -3.6672 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 1.2055 33 1 1.6054 -1.7198 1.2950 34 1 1.1489 0.8592 2.3518 35 1 2.4494 -0.9144 6.1963 36 1 0.4807 2.3654 6.3953 37 1 0.1766 3.0908 8.8983 38 1 0.7910 2.1424 11.1712 39 1 2.4167 1.4212 11.0983 40 1 1.6005 1.5582 13.1666 41 1 3.1262 -0.7994 -1.2057 42 1 1.6053 -1.7197 -1.2953 43 1 3.4126 1.1810 -2.5099 44 1 2.0280 1.8787 -3.3847 45 1 2.0678 1.9176 -1.6059 46 1 1.3394 -1.6625 -3.6398 47 1 1.6152 -0.1508 -4.5377 48 1 2.9755 -0.9672 -3.7303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324968876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:38 Heat of formation + Delta-G solvation = -8.004713 kcal Electronic energy + Delta-G solvation = -28003.241602 eV Core-core repulsion = 23901.422030 eV Total energy + Delta-G solvation = -4101.819572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52476 -41.59430 -39.90728 -39.04788 -37.00529 -36.38171 -35.57389 -33.63537 -32.76550 -31.09845 -28.78965 -28.46306 -27.96590 -27.79924 -25.91124 -24.73648 -23.20558 -22.59024 -21.97626 -21.36423 -20.77257 -19.51651 -19.22753 -18.35069 -17.78663 -17.37465 -17.05812 -16.77780 -16.44129 -16.14792 -15.99493 -15.70038 -15.64741 -15.55604 -15.14452 -15.01420 -14.83929 -14.20616 -14.01864 -13.96488 -13.79642 -13.59468 -13.32017 -13.26424 -12.95905 -12.75639 -12.60675 -12.60333 -12.57042 -12.16160 -12.02960 -11.98699 -11.90422 -11.68351 -11.56303 -11.03486 -10.83840 -10.69122 -10.37795 -9.92402 -9.30912 -9.27723 -8.79056 -6.56570 0.00762 0.80221 1.04944 1.50587 1.58165 1.68475 1.73208 1.79695 2.20672 2.46169 2.52632 3.00761 3.01184 3.23294 3.78989 3.80299 3.88704 3.98269 4.09568 4.30422 4.45670 4.46873 4.50568 4.52374 4.61137 4.62411 4.71569 4.73918 4.75311 4.76459 4.85763 4.90288 4.93456 5.03196 5.05564 5.07660 5.11026 5.31522 5.48750 5.52463 5.68927 5.76430 5.89667 6.07616 6.09622 6.12585 6.24955 6.40297 6.51746 6.75496 6.86350 7.18646 8.58219 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.001655 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.200702 B =16912.213051 C =17371.396738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.087 0.913 4 C 0.121 3.879 5 N -0.678 5.678 6 C 0.524 3.476 7 O -0.536 6.536 8 C 0.517 3.483 9 O -0.506 6.506 10 N -0.601 5.601 11 C 0.261 3.739 12 C -0.285 4.285 13 C 0.060 3.940 14 N -0.339 5.339 15 C 0.258 3.742 16 C -0.624 4.624 17 H 0.044 0.956 18 C -0.017 4.017 19 N -0.923 5.923 20 Si 1.121 2.879 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.275 1.275 24 N -0.342 5.342 25 C 0.062 3.938 26 N -0.554 5.554 27 C 0.018 3.982 28 C 0.024 3.976 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.422 0.578 35 H 0.428 0.572 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 1.018 -34.095 34.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.303 3.697 7 O -0.414 6.414 8 C 0.298 3.702 9 O -0.379 6.379 10 N -0.251 5.251 11 C 0.006 3.994 12 C -0.315 4.315 13 C -0.088 4.088 14 N -0.121 5.121 15 C 0.139 3.861 16 C -0.662 4.662 17 H 0.063 0.937 18 C -0.217 4.217 19 N -0.559 5.559 20 Si 0.942 3.058 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.201 1.201 24 N -0.173 5.173 25 C -0.066 4.066 26 N -0.278 5.278 27 C -0.130 4.130 28 C -0.124 4.124 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.266 0.734 36 H 0.196 0.804 37 H 0.224 0.776 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.106 -0.542 -31.864 31.869 hybrid contribution 1.090 1.301 -1.597 2.330 sum 0.984 0.759 -33.461 33.484 Atomic orbital electron populations 1.21736 0.93630 1.02169 1.02080 1.21314 0.97479 1.00368 0.91887 0.89498 1.21653 1.00737 0.95596 0.82163 1.45669 1.55193 1.28181 1.04129 1.19393 0.80840 0.84947 0.84517 1.90804 1.39695 1.24204 1.86653 1.20388 0.80199 0.85634 0.83953 1.90687 1.37688 1.23442 1.86118 1.42133 1.54271 1.26597 1.02086 1.19344 0.99566 0.93898 0.86554 1.21780 1.12424 0.99496 0.97836 1.23267 0.98223 0.96662 0.90678 1.48635 1.40334 1.15971 1.07144 1.19473 0.97132 0.99001 0.70519 1.22320 1.46089 1.02864 0.94913 0.93739 1.27225 0.94669 1.06368 0.93411 1.70918 1.39062 1.07838 1.38052 0.82853 0.76827 0.70668 0.75432 1.19228 1.20781 1.20057 1.77343 1.25884 1.14958 0.99113 1.22056 0.98216 0.97464 0.88874 1.61939 1.58564 1.04676 1.02620 1.22494 0.96058 0.91129 1.03331 1.22408 0.99337 0.98696 0.92002 0.91268 0.92783 0.93039 0.90568 0.90481 0.73999 0.73358 0.80363 0.77552 0.92345 0.96419 0.92858 0.94223 0.89948 0.95625 0.90898 0.90802 0.90969 0.90787 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.95 71.98 0.64 -0.72 16 2 C -0.09 -0.80 2.34 -10.80 -0.03 -0.82 16 3 H 0.09 0.71 6.34 -2.39 -0.02 0.69 16 4 C 0.12 1.46 5.06 86.38 0.44 1.90 16 5 N -0.68 -10.68 5.28 -464.54 -2.45 -13.14 16 6 C 0.52 12.01 7.89 87.23 0.69 12.70 16 7 O -0.54 -14.68 16.48 -3.28 -0.05 -14.73 16 8 C 0.52 14.28 7.85 87.24 0.69 14.97 16 9 O -0.51 -14.73 13.60 -3.37 -0.05 -14.78 16 10 N -0.60 -19.35 5.43 -308.90 -1.68 -21.02 16 11 C 0.26 10.33 8.10 133.40 1.08 11.41 16 12 C -0.28 -10.42 9.60 22.11 0.21 -10.21 16 13 C 0.06 2.24 11.43 83.51 0.95 3.19 16 14 N -0.34 -15.67 3.67 -351.84 -1.29 -16.96 16 15 C 0.26 13.11 5.57 85.64 0.48 13.59 16 16 C -0.62 -35.48 9.24 25.60 0.24 -35.25 16 17 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 18 C -0.02 -0.94 5.46 84.65 0.46 -0.48 16 19 N -0.92 -53.66 13.65 21.45 0.29 -53.37 16 20 Si 1.12 49.99 29.90 68.60 2.05 52.04 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 N -0.34 -16.08 12.42 -54.54 -0.68 -16.76 16 25 C 0.06 0.54 4.35 86.30 0.38 0.91 16 26 N -0.55 -5.18 4.47 -948.86 -4.24 -9.43 16 27 C 0.02 0.14 9.33 127.69 1.19 1.33 16 28 C 0.02 0.18 9.57 127.69 1.22 1.40 16 29 H 0.07 0.74 7.75 -2.39 -0.02 0.73 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.52 7.18 -2.39 -0.02 0.51 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.42 5.60 7.12 -92.71 -0.66 4.94 16 35 H 0.43 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.18 5.90 5.91 -2.91 -0.02 5.89 16 37 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 38 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 39 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 40 H 0.26 15.00 7.22 -92.71 -0.67 14.34 16 41 H 0.04 0.34 8.12 -2.39 -0.02 0.32 16 42 H 0.08 0.68 8.06 -2.39 -0.02 0.66 16 43 H 0.03 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 45 H 0.07 0.56 6.37 -2.39 -0.02 0.54 16 46 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 47 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 48 H 0.03 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -70.45 400.23 0.21 -70.24 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.34 Total: 23.97 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 8.64 Total: 13.93 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -10.05 Total: -130.67 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.10 Total: -29.51 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -70.45 0.21 -70.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324968876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.239 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds