Wall clock time and date at job start Tue Mar 31 2020 19:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99803 * 2 1 4 4 C 1.53001 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.34808 * 126.59290 * 125.00541 * 5 4 3 7 7 C 1.36598 * 106.84267 * 179.97438 * 6 5 4 8 8 C 1.47514 * 125.77303 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00357 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99898 * 179.97438 * 8 7 6 11 11 C 1.47023 * 125.64764 * 359.68453 * 10 8 7 12 12 C 1.54337 * 107.26273 * 178.85227 * 11 10 8 13 13 C 1.55160 * 103.02327 * 338.14154 * 12 11 10 14 14 H 1.08999 * 111.03645 * 277.22189 * 13 12 11 15 15 C 1.52997 * 111.00356 * 153.37950 * 13 12 11 16 16 H 1.09001 * 109.47278 * 306.35375 * 15 13 12 17 17 C 1.53002 * 109.46886 * 66.35280 * 15 13 12 18 18 N 1.46494 * 109.47316 * 186.34958 * 15 13 12 19 19 C 1.36942 * 120.00457 * 154.99978 * 18 15 13 20 20 H 1.07995 * 119.99495 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00254 * 180.02562 * 19 18 15 22 22 N 1.31628 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47469 * 89.99999 * 23 21 19 25 25 H 1.48500 * 109.46896 * 210.00062 * 23 21 19 26 26 H 1.48494 * 109.47241 * 329.99874 * 23 21 19 27 27 C 1.47424 * 125.64805 * 179.97438 * 10 8 7 28 28 N 1.34404 * 108.45483 * 359.97438 * 7 6 5 29 29 N 1.28767 * 109.52070 * 359.75754 * 28 7 6 30 30 H 1.09004 * 109.47514 * 59.99889 * 1 2 3 31 31 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47091 * 299.99973 * 1 2 3 33 33 H 1.08999 * 109.47231 * 60.00041 * 3 2 1 34 34 H 1.09000 * 109.46978 * 299.99794 * 3 2 1 35 35 H 1.08999 * 109.47230 * 60.00049 * 4 3 2 36 36 H 1.09000 * 109.47236 * 299.99644 * 4 3 2 37 37 H 1.08003 * 126.58130 * 359.97438 * 6 5 4 38 38 H 1.08997 * 109.88187 * 298.39568 * 11 10 8 39 39 H 1.08997 * 109.87844 * 59.56617 * 11 10 8 40 40 H 1.09000 * 110.85089 * 219.67230 * 12 11 10 41 41 H 1.08999 * 110.66890 * 96.52318 * 12 11 10 42 42 H 1.09006 * 109.47241 * 299.99245 * 17 15 13 43 43 H 1.09001 * 109.47474 * 59.99604 * 17 15 13 44 44 H 1.09008 * 109.47306 * 180.02562 * 17 15 13 45 45 H 0.97002 * 119.99791 * 335.00509 * 18 15 13 46 46 H 0.97002 * 119.99603 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.37129 * 322.93159 * 27 10 8 48 48 H 1.09007 * 110.36604 * 85.14199 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0250 3.0053 0.8866 7 6 5.3066 4.2870 0.5075 8 6 6.2390 5.2033 1.1908 9 8 6.8352 4.8346 2.1844 10 7 6.4303 6.4493 0.7138 11 6 5.7827 7.0199 -0.4764 12 6 6.2816 8.4737 -0.6166 13 6 6.7541 8.8213 0.8198 14 1 5.9154 9.1306 1.4435 15 6 7.8410 9.8977 0.7941 16 1 8.6474 9.5841 0.1312 17 6 7.2451 11.2121 0.2861 18 7 8.3686 10.0915 2.1470 19 6 9.6348 10.5819 2.3246 20 1 10.2443 10.8262 1.4672 21 6 10.1348 10.7649 3.6065 22 7 9.3920 10.4667 4.6514 23 14 11.8617 11.4345 3.8486 24 1 11.8118 12.9167 3.9244 25 1 12.4302 10.8932 5.1092 26 1 12.7159 11.0259 2.7048 27 6 7.3281 7.4636 1.2956 28 7 4.5911 4.5718 -0.5941 29 7 3.8866 3.5465 -0.9265 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 5.4390 2.4791 1.7341 38 1 6.0582 6.4445 -1.3601 39 1 4.7002 7.0121 -0.3489 40 1 5.4713 9.1338 -0.9263 41 1 7.1125 8.5291 -1.3199 42 1 6.8527 11.0681 -0.7206 43 1 6.4387 11.5258 0.9490 44 1 8.0196 11.9790 0.2673 45 1 7.8209 9.8723 2.9171 46 1 9.7413 10.5950 5.5472 47 1 7.3118 7.4053 2.3839 48 1 8.3441 7.3286 0.9244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325397778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:32 Heat of formation + Delta-G solvation = 36.542133 kcal Electronic energy + Delta-G solvation = -28748.028168 eV Core-core repulsion = 24648.140293 eV Total energy + Delta-G solvation = -4099.887876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48341 -39.69242 -38.65683 -37.62375 -35.38557 -35.04099 -32.44239 -31.44333 -30.71437 -30.05972 -28.47590 -28.07598 -27.01353 -24.54958 -24.51826 -23.78834 -22.33155 -22.02785 -21.36703 -19.59959 -19.55294 -17.99747 -17.22094 -17.03651 -16.81360 -16.28623 -16.16132 -15.98651 -15.52078 -15.09412 -14.77447 -14.69752 -14.32890 -13.97918 -13.66190 -13.57163 -13.09325 -12.95897 -12.72627 -12.56668 -12.48834 -12.27628 -12.09970 -11.99383 -11.92889 -11.68047 -11.30013 -11.18448 -10.84202 -10.75715 -10.66074 -10.50580 -10.44332 -10.39964 -10.15814 -10.00676 -9.79630 -9.56447 -9.53741 -8.85952 -8.39681 -6.90471 -5.70542 -2.99279 0.83129 1.52139 1.57998 3.06537 3.08820 3.30986 3.47746 3.52913 3.54683 3.89424 4.02154 4.16196 4.40262 4.50580 4.62627 4.65651 4.70690 4.72912 4.81558 4.86268 4.95421 5.01125 5.08996 5.14200 5.17201 5.45071 5.54011 5.62119 5.74438 5.87259 5.96521 5.98510 6.02669 6.05232 6.22701 6.24510 6.35999 6.39494 6.45389 6.48063 6.65086 6.70826 6.91560 7.13772 7.60645 7.71163 7.75662 8.23892 8.47647 9.58954 10.16326 10.50868 11.51992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.001987 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.467585 B =14086.261567 C =14818.649650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.097 3.903 7 C -0.090 4.090 8 C 0.611 3.389 9 O -0.537 6.537 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.126 4.126 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.184 3.816 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.121 3.879 28 N -0.197 5.197 29 N -0.070 5.070 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.085 0.915 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.939 -19.933 -12.566 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.229 4.229 8 C 0.397 3.603 9 O -0.414 6.414 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.165 4.165 13 C -0.122 4.122 14 H 0.099 0.901 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.366 5.366 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.208 1.208 27 C 0.000 4.000 28 N -0.071 5.071 29 N -0.050 5.050 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.134 -19.968 -13.261 30.057 hybrid contribution 0.946 0.145 1.313 1.625 sum -17.188 -19.822 -11.948 28.829 Atomic orbital electron populations 1.22815 0.79586 1.03319 1.00576 1.87780 1.20854 1.26446 1.95638 1.22625 0.91893 0.85808 1.02469 1.21681 0.93189 0.78050 1.06634 1.50261 1.30789 1.13621 1.20319 1.23405 0.91908 0.94891 0.95690 1.21508 1.06925 0.95450 0.99007 1.16323 0.80767 0.80161 0.83082 1.90849 1.49505 1.75440 1.25578 1.48340 1.44205 1.12076 1.28828 1.22090 0.97610 0.94037 0.87521 1.22727 1.01544 0.94459 0.97757 1.22663 0.99398 0.94694 0.95414 0.90113 1.20163 0.92386 0.91002 0.89032 0.93274 1.22433 1.00867 1.00380 0.98669 1.42422 1.15352 1.77733 1.01056 1.19211 0.90827 1.34840 0.91940 0.91224 1.24726 0.98250 1.02374 0.95570 1.69664 1.36508 1.54382 0.97423 0.86223 0.84531 0.78512 0.77118 1.21864 1.21863 1.20823 1.22306 0.92741 0.84961 0.99960 1.74758 1.03744 1.18391 1.10176 1.81984 1.20677 0.90635 1.11674 0.93523 0.88985 0.93637 0.92249 0.91224 0.87347 0.86670 0.77615 0.91159 0.91069 0.90115 0.90493 0.94358 0.93533 0.92828 0.78262 0.93574 0.89621 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.41 10.70 -35.23 -0.38 -2.79 16 3 C 0.05 0.28 6.15 37.16 0.23 0.51 16 4 C 0.13 0.63 6.91 -4.04 -0.03 0.61 16 5 N -0.36 -3.11 3.69 -61.06 -0.23 -3.33 16 6 C 0.10 0.94 11.27 -16.84 -0.19 0.75 16 7 C -0.09 -1.18 6.85 -83.55 -0.57 -1.75 16 8 C 0.61 9.92 7.85 -12.48 -0.10 9.83 16 9 O -0.54 -10.30 17.12 5.28 0.09 -10.21 16 10 N -0.60 -9.51 3.33 -171.76 -0.57 -10.08 16 11 C 0.11 1.43 5.52 -3.06 -0.02 1.42 16 12 C -0.13 -1.59 5.59 -24.89 -0.14 -1.73 16 13 C -0.10 -1.63 2.63 -88.48 -0.23 -1.87 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.18 3.51 2.41 -67.93 -0.16 3.34 16 16 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 17 C -0.16 -2.83 9.34 37.16 0.35 -2.48 16 18 N -0.72 -17.72 4.82 -53.43 -0.26 -17.98 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 23 Si 0.90 22.60 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.12 2.15 6.08 -2.54 -0.02 2.13 16 28 N -0.20 -2.55 9.78 32.84 0.32 -2.23 16 29 N -0.07 -0.79 13.65 60.35 0.82 0.03 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.16 8.14 -51.92 -0.42 -0.27 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.12 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 39 H 0.07 0.90 7.60 -51.93 -0.39 0.50 16 40 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 41 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 42 H 0.04 0.54 7.50 -51.93 -0.39 0.15 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 48 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -34.37 400.51 -6.26 -40.63 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.79 Total: 5.05 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.01 Total: 4.86 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.82 Total: -61.16 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.29 Total: -13.00 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.37 -6.26 -40.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.173 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds