Wall clock time and date at job start Tue Mar 31 2020 19:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99803 * 2 1 4 4 C 1.53001 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.34808 * 126.59290 * 125.00541 * 5 4 3 7 7 C 1.36598 * 106.84267 * 179.97438 * 6 5 4 8 8 C 1.47514 * 125.77303 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00357 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99898 * 179.97438 * 8 7 6 11 11 C 1.47023 * 125.64764 * 359.68453 * 10 8 7 12 12 C 1.54337 * 107.26273 * 178.85227 * 11 10 8 13 13 C 1.55160 * 103.02327 * 338.14154 * 12 11 10 14 14 H 1.08999 * 111.03645 * 277.22189 * 13 12 11 15 15 C 1.52997 * 111.00356 * 153.37950 * 13 12 11 16 16 H 1.09001 * 109.47278 * 306.35375 * 15 13 12 17 17 C 1.53002 * 109.46886 * 66.35280 * 15 13 12 18 18 N 1.46494 * 109.47316 * 186.34958 * 15 13 12 19 19 C 1.36942 * 120.00457 * 154.99978 * 18 15 13 20 20 H 1.07995 * 119.99495 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00254 * 180.02562 * 19 18 15 22 22 N 1.31628 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47469 * 89.99999 * 23 21 19 25 25 H 1.48500 * 109.46896 * 210.00062 * 23 21 19 26 26 H 1.48494 * 109.47241 * 329.99874 * 23 21 19 27 27 C 1.47424 * 125.64805 * 179.97438 * 10 8 7 28 28 N 1.34404 * 108.45483 * 359.97438 * 7 6 5 29 29 N 1.28767 * 109.52070 * 359.75754 * 28 7 6 30 30 H 1.09004 * 109.47514 * 59.99889 * 1 2 3 31 31 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47091 * 299.99973 * 1 2 3 33 33 H 1.08999 * 109.47231 * 60.00041 * 3 2 1 34 34 H 1.09000 * 109.46978 * 299.99794 * 3 2 1 35 35 H 1.08999 * 109.47230 * 60.00049 * 4 3 2 36 36 H 1.09000 * 109.47236 * 299.99644 * 4 3 2 37 37 H 1.08003 * 126.58130 * 359.97438 * 6 5 4 38 38 H 1.08997 * 109.88187 * 298.39568 * 11 10 8 39 39 H 1.08997 * 109.87844 * 59.56617 * 11 10 8 40 40 H 1.09000 * 110.85089 * 219.67230 * 12 11 10 41 41 H 1.08999 * 110.66890 * 96.52318 * 12 11 10 42 42 H 1.09006 * 109.47241 * 299.99245 * 17 15 13 43 43 H 1.09001 * 109.47474 * 59.99604 * 17 15 13 44 44 H 1.09008 * 109.47306 * 180.02562 * 17 15 13 45 45 H 0.97002 * 119.99791 * 335.00509 * 18 15 13 46 46 H 0.97002 * 119.99603 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.37129 * 322.93159 * 27 10 8 48 48 H 1.09007 * 110.36604 * 85.14199 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0250 3.0053 0.8866 7 6 5.3066 4.2870 0.5075 8 6 6.2390 5.2033 1.1908 9 8 6.8352 4.8346 2.1844 10 7 6.4303 6.4493 0.7138 11 6 5.7827 7.0199 -0.4764 12 6 6.2816 8.4737 -0.6166 13 6 6.7541 8.8213 0.8198 14 1 5.9154 9.1306 1.4435 15 6 7.8410 9.8977 0.7941 16 1 8.6474 9.5841 0.1312 17 6 7.2451 11.2121 0.2861 18 7 8.3686 10.0915 2.1470 19 6 9.6348 10.5819 2.3246 20 1 10.2443 10.8262 1.4672 21 6 10.1348 10.7649 3.6065 22 7 9.3920 10.4667 4.6514 23 14 11.8617 11.4345 3.8486 24 1 11.8118 12.9167 3.9244 25 1 12.4302 10.8932 5.1092 26 1 12.7159 11.0259 2.7048 27 6 7.3281 7.4636 1.2956 28 7 4.5911 4.5718 -0.5941 29 7 3.8866 3.5465 -0.9265 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 5.4390 2.4791 1.7341 38 1 6.0582 6.4445 -1.3601 39 1 4.7002 7.0121 -0.3489 40 1 5.4713 9.1338 -0.9263 41 1 7.1125 8.5291 -1.3199 42 1 6.8527 11.0681 -0.7206 43 1 6.4387 11.5258 0.9490 44 1 8.0196 11.9790 0.2673 45 1 7.8209 9.8723 2.9171 46 1 9.7413 10.5950 5.5472 47 1 7.3118 7.4053 2.3839 48 1 8.3441 7.3286 0.9244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325397778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:31 Heat of formation + Delta-G solvation = 11.622023 kcal Electronic energy + Delta-G solvation = -28749.108785 eV Core-core repulsion = 24648.140293 eV Total energy + Delta-G solvation = -4100.968493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33243 -40.94755 -39.11125 -38.95864 -36.78669 -35.96482 -34.25491 -32.40611 -31.96361 -30.96200 -29.98304 -29.47311 -27.41543 -25.96961 -25.49462 -25.09282 -23.32224 -22.94185 -22.64222 -21.04794 -20.63184 -19.22997 -18.66414 -17.85051 -17.55069 -17.35845 -17.02126 -16.87858 -16.50160 -16.30505 -15.83559 -15.71659 -15.46224 -15.32576 -15.10407 -14.62260 -14.48806 -14.12870 -13.97799 -13.62968 -13.43418 -13.35504 -13.24345 -13.06769 -12.96910 -12.78066 -12.61277 -12.41119 -12.31521 -12.19521 -12.09945 -11.99438 -11.68888 -11.49653 -11.43489 -11.34779 -11.24470 -10.90178 -10.80109 -10.45224 -9.67281 -8.94999 -7.88963 -5.16258 0.04525 0.55941 0.87162 1.48495 1.50033 1.58043 1.89061 2.14946 2.59438 2.65366 3.04885 3.39705 3.44617 3.53689 3.70096 3.75727 3.78460 3.89901 3.90445 4.07124 4.17491 4.20133 4.37269 4.42905 4.43308 4.47746 4.51676 4.58991 4.60233 4.68225 4.72927 4.81180 4.84245 4.91426 4.97521 5.03377 5.12543 5.15894 5.26273 5.30748 5.37910 5.44335 5.57443 5.68344 5.98189 6.33208 6.42832 6.75898 7.02667 7.39134 8.16992 8.38513 9.34668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.001987 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.467585 B =14086.261567 C =14818.649650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.119 3.881 7 C -0.118 4.118 8 C 0.607 3.393 9 O -0.578 6.578 10 N -0.606 5.606 11 C 0.114 3.886 12 C -0.113 4.113 13 C -0.092 4.092 14 H 0.077 0.923 15 C 0.179 3.821 16 H 0.048 0.952 17 C -0.153 4.153 18 N -0.737 5.737 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.300 1.300 26 H -0.270 1.270 27 C 0.127 3.873 28 N -0.209 5.209 29 N -0.081 5.081 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.370 0.630 46 H 0.248 0.752 47 H 0.047 0.953 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 -20.973 -14.784 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.134 5.134 6 C -0.039 4.039 7 C -0.257 4.257 8 C 0.394 3.606 9 O -0.458 6.458 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.151 4.151 13 C -0.112 4.112 14 H 0.095 0.905 15 C 0.071 3.929 16 H 0.066 0.934 17 C -0.213 4.213 18 N -0.377 5.377 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.195 1.195 27 C 0.005 3.995 28 N -0.083 5.083 29 N -0.061 5.061 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.235 -21.013 -15.581 32.470 hybrid contribution 1.169 0.330 1.924 2.275 sum -18.066 -20.683 -13.658 30.671 Atomic orbital electron populations 1.22983 0.78598 1.04351 1.01002 1.87754 1.22002 1.26572 1.95695 1.22557 0.92187 0.85691 1.02046 1.22047 0.92795 0.76291 1.08778 1.50435 1.29878 1.14104 1.19001 1.23789 0.90741 0.93704 0.95658 1.21183 1.07999 0.96326 1.00162 1.16777 0.80691 0.80409 0.82683 1.90813 1.51277 1.76288 1.27420 1.48425 1.43899 1.11849 1.29512 1.22207 0.97787 0.94168 0.86584 1.22750 1.02831 0.94477 0.95065 1.22482 0.98081 0.92514 0.98075 0.90486 1.20412 0.93240 0.92941 0.86289 0.93406 1.22272 1.00016 0.98149 1.00816 1.42642 1.14565 1.77539 1.02920 1.19612 0.91877 1.32784 0.91997 0.90521 1.25506 1.02001 1.04035 0.95591 1.69830 1.38216 1.56700 0.97467 0.85209 0.80476 0.77728 0.76806 1.21525 1.22736 1.19459 1.22032 0.92805 0.86965 0.97721 1.74712 1.04042 1.19283 1.10248 1.81912 1.20657 0.91062 1.12491 0.93139 0.87737 0.93200 0.92388 0.92021 0.86025 0.83778 0.74765 0.90160 0.90321 0.87208 0.89302 0.90212 0.94011 0.94658 0.79827 0.94346 0.93463 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.21 10.70 -148.98 -1.59 -5.80 16 3 C 0.05 0.49 6.15 71.98 0.44 0.93 16 4 C 0.12 0.88 6.91 86.38 0.60 1.47 16 5 N -0.35 -5.16 3.69 -347.09 -1.28 -6.44 16 6 C 0.12 2.06 11.27 83.85 0.95 3.00 16 7 C -0.12 -2.99 6.85 40.81 0.28 -2.71 16 8 C 0.61 20.01 7.85 86.69 0.68 20.69 16 9 O -0.58 -22.99 17.12 -4.02 -0.07 -23.06 16 10 N -0.61 -19.25 3.33 -815.57 -2.71 -21.96 16 11 C 0.11 2.78 5.52 86.73 0.48 3.26 16 12 C -0.11 -2.53 5.59 31.79 0.18 -2.36 16 13 C -0.09 -2.89 2.63 -9.41 -0.02 -2.91 16 14 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 15 C 0.18 6.72 2.41 44.99 0.11 6.83 16 16 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 17 C -0.15 -5.00 9.34 71.98 0.67 -4.33 16 18 N -0.74 -36.80 4.82 -322.96 -1.56 -38.35 16 19 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 23 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 27 C 0.13 4.66 6.08 86.85 0.53 5.19 16 28 N -0.21 -5.14 9.78 -50.00 -0.49 -5.63 16 29 N -0.08 -1.71 13.65 37.02 0.51 -1.20 16 30 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.14 0.28 8.08 -2.39 -0.02 0.26 16 37 H 0.24 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.08 1.83 7.75 -2.39 -0.02 1.82 16 39 H 0.08 1.83 7.60 -2.39 -0.02 1.81 16 40 H 0.11 1.90 8.13 -2.39 -0.02 1.89 16 41 H 0.09 1.84 8.01 -2.39 -0.02 1.82 16 42 H 0.08 1.95 7.50 -2.38 -0.02 1.94 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 46 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 48 H 0.06 2.28 8.04 -2.38 -0.02 2.26 16 Total: -1.00 -77.26 400.51 2.78 -74.48 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.24 Total: 25.04 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 7.43 Total: 14.34 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -5.25 Total: -134.23 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.66 Total: -28.86 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.26 2.78 -74.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.101 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds