Wall clock time and date at job start Tue Mar 31 2020 19:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99678 * 2 1 4 4 C 1.52994 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.34814 * 126.59016 * 124.99967 * 5 4 3 7 7 C 1.36601 * 106.83441 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77047 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99881 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00175 * 180.27419 * 8 7 6 11 11 C 1.47027 * 125.64926 * 359.75431 * 10 8 7 12 12 C 1.54324 * 107.27233 * 181.01722 * 11 10 8 13 13 C 1.55156 * 102.94272 * 22.19672 * 12 11 10 14 14 H 1.08998 * 111.00887 * 82.56211 * 13 12 11 15 15 C 1.52998 * 111.00318 * 206.38440 * 13 12 11 16 16 H 1.09000 * 109.47257 * 59.99931 * 15 13 12 17 17 C 1.52992 * 109.46967 * 299.99691 * 15 13 12 18 18 N 1.46502 * 109.47038 * 179.97438 * 15 13 12 19 19 C 1.36940 * 119.99864 * 205.00310 * 18 15 13 20 20 H 1.07999 * 120.00133 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99825 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47136 * 89.99549 * 23 21 19 25 25 H 1.48499 * 109.47314 * 209.99292 * 23 21 19 26 26 H 1.48502 * 109.47281 * 329.99560 * 23 21 19 27 27 C 1.47422 * 125.65031 * 179.44300 * 10 8 7 28 28 N 1.34399 * 108.46049 * 0.26443 * 7 6 5 29 29 N 1.28760 * 109.52242 * 359.55000 * 28 7 6 30 30 H 1.09001 * 109.47382 * 60.00509 * 1 2 3 31 31 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47577 * 299.99891 * 1 2 3 33 33 H 1.08999 * 109.46815 * 60.00032 * 3 2 1 34 34 H 1.08997 * 109.47306 * 299.99955 * 3 2 1 35 35 H 1.08999 * 109.47235 * 59.99540 * 4 3 2 36 36 H 1.09006 * 109.47147 * 300.00106 * 4 3 2 37 37 H 1.07993 * 126.58839 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.87929 * 300.44156 * 11 10 8 39 39 H 1.09005 * 109.87708 * 61.44682 * 11 10 8 40 40 H 1.09001 * 110.71264 * 140.55507 * 12 11 10 41 41 H 1.08997 * 110.72037 * 263.65355 * 12 11 10 42 42 H 1.08998 * 109.47487 * 59.99956 * 17 15 13 43 43 H 1.09009 * 109.46985 * 180.02562 * 17 15 13 44 44 H 1.09000 * 109.47328 * 300.00197 * 17 15 13 45 45 H 0.96997 * 120.00007 * 24.99259 * 18 15 13 46 46 H 0.97003 * 120.00123 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.37065 * 274.74679 * 27 10 8 48 48 H 1.09003 * 110.36802 * 37.06773 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0249 3.0054 0.8868 7 6 5.3055 4.2875 0.5082 8 6 6.2368 5.2044 1.1924 9 8 6.8334 4.8354 2.1857 10 7 6.4228 6.4527 0.7195 11 6 5.7691 7.0261 -0.4661 12 6 6.3050 8.4634 -0.6347 13 6 7.6526 8.4241 0.1333 14 1 8.4458 8.0114 -0.4901 15 6 8.0310 9.8142 0.6483 16 1 7.2548 10.1755 1.3229 17 6 8.1679 10.7761 -0.5335 18 7 9.3054 9.7385 1.3671 19 6 9.6061 10.6674 2.3273 20 1 8.9041 11.4560 2.5545 21 6 10.8138 10.5959 3.0079 22 7 11.6697 9.6351 2.7307 23 14 11.2244 11.8634 4.3172 24 1 10.7369 11.3876 5.6369 25 1 12.6955 12.0579 4.3738 26 1 10.5672 13.1522 3.9820 27 6 7.3105 7.4715 1.3089 28 7 4.5848 4.5746 -0.5894 29 7 3.8812 3.5490 -0.9225 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6437 -0.8890 36 1 3.8566 0.6440 0.8909 37 1 5.4394 2.4791 1.7338 38 1 6.0138 6.4333 -1.3474 39 1 4.6889 7.0454 -0.3208 40 1 6.4678 8.6932 -1.6877 41 1 5.6226 9.1847 -0.1850 42 1 7.2196 10.8324 -1.0679 43 1 8.4379 11.7664 -0.1666 44 1 8.9441 10.4148 -1.2080 45 1 9.9360 9.0304 1.1629 46 1 12.5134 9.5850 3.2066 47 1 6.7931 8.0131 2.1008 48 1 8.2171 7.0064 1.6961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325397779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:34 Heat of formation + Delta-G solvation = 36.741400 kcal Electronic energy + Delta-G solvation = -28712.889500 eV Core-core repulsion = 24613.010265 eV Total energy + Delta-G solvation = -4099.879235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49123 -39.70257 -38.66661 -37.63247 -35.39255 -35.04622 -32.45483 -31.45235 -30.71332 -30.06516 -28.49598 -28.05547 -27.02209 -24.55811 -24.51946 -23.80420 -22.33415 -22.02633 -21.39903 -19.60070 -19.55158 -18.00226 -17.22708 -17.02587 -16.81178 -16.38196 -16.17762 -15.90933 -15.47623 -15.26190 -14.75783 -14.67990 -14.19615 -14.10377 -13.67068 -13.55784 -13.09331 -12.90753 -12.79182 -12.58990 -12.49502 -12.27901 -12.12157 -11.99704 -11.93392 -11.66821 -11.31062 -11.19404 -10.82840 -10.76685 -10.68320 -10.49761 -10.44494 -10.40950 -10.14458 -10.02096 -9.80094 -9.56901 -9.54574 -8.85992 -8.41369 -6.90472 -5.70649 -2.99315 0.82352 1.51403 1.57172 3.05273 3.07833 3.29677 3.47808 3.52763 3.54349 3.88682 4.01405 4.15326 4.39368 4.49841 4.62626 4.64807 4.69793 4.71915 4.80671 4.85824 4.94588 5.00184 5.08055 5.13680 5.17040 5.44454 5.53049 5.61948 5.72704 5.86538 5.95802 5.98229 6.02679 6.05401 6.21654 6.23696 6.35145 6.37111 6.44991 6.48134 6.62881 6.70956 6.92019 7.13834 7.59555 7.70027 7.75544 8.22409 8.47545 9.58885 10.16385 10.50935 11.51914 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.001958 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.389488 B =14293.246871 C =15022.554474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.097 3.903 7 C -0.090 4.090 8 C 0.611 3.389 9 O -0.538 6.538 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.126 4.126 13 C -0.101 4.101 14 H 0.082 0.918 15 C 0.184 3.816 16 H 0.049 0.951 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.120 3.880 28 N -0.197 5.197 29 N -0.069 5.069 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.073 0.927 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 -18.429 -8.814 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.229 4.229 8 C 0.397 3.603 9 O -0.414 6.414 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.165 4.165 13 C -0.121 4.121 14 H 0.100 0.900 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.224 4.224 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.001 4.001 28 N -0.071 5.071 29 N -0.049 5.049 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.752 -18.369 -9.371 30.707 hybrid contribution 0.754 0.229 1.466 1.665 sum -21.998 -18.140 -7.905 29.588 Atomic orbital electron populations 1.22812 0.79593 1.03326 1.00563 1.87781 1.20848 1.26442 1.95635 1.22622 0.91903 0.85808 1.02450 1.21682 0.93176 0.78055 1.06659 1.50266 1.30751 1.13553 1.20414 1.23405 0.91933 0.94889 0.95655 1.21504 1.06862 0.95449 0.99095 1.16327 0.80777 0.80072 0.83131 1.90848 1.49270 1.75666 1.25657 1.48333 1.44412 1.11666 1.29013 1.22101 0.97186 0.94236 0.87778 1.22724 0.97194 0.95165 1.01374 1.22705 0.96484 0.97161 0.95762 0.89985 1.20153 0.90037 0.90209 0.92185 0.93305 1.22436 0.99399 1.01173 0.99371 1.42426 1.16465 1.34206 1.43452 1.19213 1.00611 1.05539 1.11461 0.91225 1.24722 0.97123 0.98710 1.00349 1.69659 1.09863 1.33805 1.44668 0.86229 0.77234 0.80950 0.81997 1.21790 1.21887 1.20852 1.22376 0.93918 0.87857 0.95926 1.74754 1.03709 1.18475 1.10121 1.81986 1.20639 0.90487 1.11836 0.93528 0.88982 0.93648 0.92279 0.91216 0.87324 0.86669 0.77616 0.91056 0.91176 0.90092 0.90487 0.94299 0.92845 0.93525 0.78266 0.93574 0.90883 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.37 10.70 -35.23 -0.38 -2.75 16 3 C 0.05 0.27 6.14 37.15 0.23 0.50 16 4 C 0.13 0.63 6.91 -4.04 -0.03 0.60 16 5 N -0.36 -3.08 3.69 -61.06 -0.23 -3.31 16 6 C 0.10 0.93 11.27 -16.83 -0.19 0.74 16 7 C -0.09 -1.17 6.85 -83.55 -0.57 -1.74 16 8 C 0.61 9.84 7.85 -12.48 -0.10 9.74 16 9 O -0.54 -10.21 17.12 5.27 0.09 -10.12 16 10 N -0.60 -9.41 3.32 -171.60 -0.57 -9.98 16 11 C 0.11 1.42 5.52 -3.06 -0.02 1.40 16 12 C -0.13 -1.58 5.28 -24.90 -0.13 -1.71 16 13 C -0.10 -1.62 2.67 -88.35 -0.24 -1.86 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.18 3.51 2.43 -67.93 -0.17 3.34 16 16 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 17 C -0.16 -2.83 9.27 37.15 0.34 -2.49 16 18 N -0.72 -17.74 4.97 -53.43 -0.27 -18.00 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 23 Si 0.90 22.59 29.55 -169.99 -5.02 17.56 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.12 2.10 6.24 -2.41 -0.02 2.09 16 28 N -0.20 -2.53 9.77 32.85 0.32 -2.21 16 29 N -0.07 -0.79 13.65 60.35 0.82 0.04 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.12 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.07 0.90 7.63 -51.93 -0.40 0.51 16 39 H 0.07 0.86 7.71 -51.93 -0.40 0.46 16 40 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 42 H 0.04 0.55 7.28 -51.93 -0.38 0.17 16 43 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 1.32 7.99 -51.93 -0.41 0.91 16 48 H 0.09 1.73 8.03 -51.93 -0.42 1.32 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -34.39 400.19 -6.26 -40.65 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.77 Total: 4.97 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.01 Total: 4.71 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.81 Total: -61.05 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.29 Total: -12.87 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.39 -6.26 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.387 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds