Wall clock time and date at job start Tue Mar 31 2020 19:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99678 * 2 1 4 4 C 1.52994 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.34814 * 126.59016 * 124.99967 * 5 4 3 7 7 C 1.36601 * 106.83441 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77047 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99881 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00175 * 180.27419 * 8 7 6 11 11 C 1.47027 * 125.64926 * 359.75431 * 10 8 7 12 12 C 1.54324 * 107.27233 * 181.01722 * 11 10 8 13 13 C 1.55156 * 102.94272 * 22.19672 * 12 11 10 14 14 H 1.08998 * 111.00887 * 82.56211 * 13 12 11 15 15 C 1.52998 * 111.00318 * 206.38440 * 13 12 11 16 16 H 1.09000 * 109.47257 * 59.99931 * 15 13 12 17 17 C 1.52992 * 109.46967 * 299.99691 * 15 13 12 18 18 N 1.46502 * 109.47038 * 179.97438 * 15 13 12 19 19 C 1.36940 * 119.99864 * 205.00310 * 18 15 13 20 20 H 1.07999 * 120.00133 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99825 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47136 * 89.99549 * 23 21 19 25 25 H 1.48499 * 109.47314 * 209.99292 * 23 21 19 26 26 H 1.48502 * 109.47281 * 329.99560 * 23 21 19 27 27 C 1.47422 * 125.65031 * 179.44300 * 10 8 7 28 28 N 1.34399 * 108.46049 * 0.26443 * 7 6 5 29 29 N 1.28760 * 109.52242 * 359.55000 * 28 7 6 30 30 H 1.09001 * 109.47382 * 60.00509 * 1 2 3 31 31 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47577 * 299.99891 * 1 2 3 33 33 H 1.08999 * 109.46815 * 60.00032 * 3 2 1 34 34 H 1.08997 * 109.47306 * 299.99955 * 3 2 1 35 35 H 1.08999 * 109.47235 * 59.99540 * 4 3 2 36 36 H 1.09006 * 109.47147 * 300.00106 * 4 3 2 37 37 H 1.07993 * 126.58839 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.87929 * 300.44156 * 11 10 8 39 39 H 1.09005 * 109.87708 * 61.44682 * 11 10 8 40 40 H 1.09001 * 110.71264 * 140.55507 * 12 11 10 41 41 H 1.08997 * 110.72037 * 263.65355 * 12 11 10 42 42 H 1.08998 * 109.47487 * 59.99956 * 17 15 13 43 43 H 1.09009 * 109.46985 * 180.02562 * 17 15 13 44 44 H 1.09000 * 109.47328 * 300.00197 * 17 15 13 45 45 H 0.96997 * 120.00007 * 24.99259 * 18 15 13 46 46 H 0.97003 * 120.00123 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.37065 * 274.74679 * 27 10 8 48 48 H 1.09003 * 110.36802 * 37.06773 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0249 3.0054 0.8868 7 6 5.3055 4.2875 0.5082 8 6 6.2368 5.2044 1.1924 9 8 6.8334 4.8354 2.1857 10 7 6.4228 6.4527 0.7195 11 6 5.7691 7.0261 -0.4661 12 6 6.3050 8.4634 -0.6347 13 6 7.6526 8.4241 0.1333 14 1 8.4458 8.0114 -0.4901 15 6 8.0310 9.8142 0.6483 16 1 7.2548 10.1755 1.3229 17 6 8.1679 10.7761 -0.5335 18 7 9.3054 9.7385 1.3671 19 6 9.6061 10.6674 2.3273 20 1 8.9041 11.4560 2.5545 21 6 10.8138 10.5959 3.0079 22 7 11.6697 9.6351 2.7307 23 14 11.2244 11.8634 4.3172 24 1 10.7369 11.3876 5.6369 25 1 12.6955 12.0579 4.3738 26 1 10.5672 13.1522 3.9820 27 6 7.3105 7.4715 1.3089 28 7 4.5848 4.5746 -0.5894 29 7 3.8812 3.5490 -0.9225 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6437 -0.8890 36 1 3.8566 0.6440 0.8909 37 1 5.4394 2.4791 1.7338 38 1 6.0138 6.4333 -1.3474 39 1 4.6889 7.0454 -0.3208 40 1 6.4678 8.6932 -1.6877 41 1 5.6226 9.1847 -0.1850 42 1 7.2196 10.8324 -1.0679 43 1 8.4379 11.7664 -0.1666 44 1 8.9441 10.4148 -1.2080 45 1 9.9360 9.0304 1.1629 46 1 12.5134 9.5850 3.2066 47 1 6.7931 8.0131 2.1008 48 1 8.2171 7.0064 1.6961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325397779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:33 Heat of formation + Delta-G solvation = 11.780501 kcal Electronic energy + Delta-G solvation = -28713.971886 eV Core-core repulsion = 24613.010265 eV Total energy + Delta-G solvation = -4100.961621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33240 -40.94623 -39.11117 -38.95802 -36.78816 -35.96609 -34.26199 -32.40552 -31.96397 -30.96329 -29.97645 -29.45972 -27.41489 -25.98625 -25.47962 -25.09312 -23.30961 -22.95901 -22.66164 -21.04359 -20.61880 -19.21783 -18.68203 -17.76140 -17.62479 -17.40352 -17.06503 -16.79628 -16.44593 -16.35277 -15.94860 -15.61092 -15.50365 -15.30978 -15.04405 -14.65681 -14.44589 -14.18116 -13.97114 -13.63161 -13.47401 -13.33173 -13.22626 -13.10869 -12.94426 -12.78663 -12.59377 -12.40500 -12.34861 -12.18122 -12.10666 -11.95430 -11.69704 -11.50714 -11.43018 -11.34867 -11.24290 -10.90327 -10.79996 -10.45205 -9.67399 -8.95076 -7.89059 -5.16320 0.04554 0.55920 0.87233 1.48386 1.50100 1.57931 1.88893 2.14867 2.59426 2.65374 3.04857 3.39721 3.44436 3.54091 3.70128 3.75810 3.78834 3.89254 3.90439 4.07159 4.17528 4.19467 4.36611 4.42838 4.43369 4.47363 4.51544 4.59030 4.60704 4.68983 4.72757 4.81025 4.84333 4.90742 4.97477 5.02440 5.13125 5.16022 5.26008 5.30772 5.37327 5.45012 5.57502 5.68444 5.98404 6.33141 6.42562 6.75831 7.02527 7.39072 8.16989 8.38532 9.34599 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.001958 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.389488 B =14293.246871 C =15022.554474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.120 3.880 5 N -0.349 5.349 6 C 0.119 3.881 7 C -0.118 4.118 8 C 0.607 3.393 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.114 3.886 12 C -0.113 4.113 13 C -0.091 4.091 14 H 0.075 0.925 15 C 0.179 3.821 16 H 0.047 0.953 17 C -0.153 4.153 18 N -0.737 5.737 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.268 1.268 27 C 0.125 3.875 28 N -0.209 5.209 29 N -0.081 5.081 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.236 0.764 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.041 0.959 45 H 0.370 0.630 46 H 0.248 0.752 47 H 0.062 0.938 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.766 -18.906 -9.884 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.001 3.999 5 N -0.134 5.134 6 C -0.039 4.039 7 C -0.257 4.257 8 C 0.395 3.605 9 O -0.458 6.458 10 N -0.337 5.337 11 C -0.008 4.008 12 C -0.151 4.151 13 C -0.111 4.111 14 H 0.093 0.907 15 C 0.071 3.929 16 H 0.065 0.935 17 C -0.213 4.213 18 N -0.377 5.377 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.003 3.997 28 N -0.083 5.083 29 N -0.061 5.061 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.232 -18.832 -10.501 33.190 hybrid contribution 1.348 0.253 1.759 2.230 sum -23.884 -18.579 -8.742 31.497 Atomic orbital electron populations 1.22980 0.78590 1.04346 1.01012 1.87755 1.22012 1.26588 1.95696 1.22552 0.92142 0.85686 1.02067 1.22046 0.92838 0.76299 1.08758 1.50439 1.29855 1.14029 1.19098 1.23792 0.90758 0.93703 0.95627 1.21190 1.07921 0.96339 1.00244 1.16773 0.80680 0.80332 0.82747 1.90812 1.51004 1.76483 1.27492 1.48416 1.44123 1.11488 1.29632 1.22209 0.97546 0.94272 0.86737 1.22746 0.94635 0.95280 1.02439 1.22515 0.98450 0.94796 0.95373 0.90664 1.20400 0.87510 0.92454 0.92512 0.93451 1.22275 1.01460 0.99107 0.98423 1.42648 1.18128 1.33250 1.43643 1.19616 1.00233 1.05422 1.11037 0.90525 1.25501 0.97569 1.00949 1.03074 1.69823 1.10177 1.35962 1.46256 0.85216 0.76460 0.79278 0.79296 1.21901 1.22538 1.19263 1.22122 0.92672 0.88428 0.96474 1.74709 1.04013 1.19377 1.10197 1.81913 1.20647 0.90928 1.12656 0.93160 0.87763 0.93144 0.92311 0.92035 0.86107 0.83762 0.74748 0.90469 0.90067 0.87376 0.89108 0.90148 0.94710 0.93973 0.79831 0.94336 0.92005 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.40 -4.13 10.70 -148.98 -1.59 -5.72 16 3 C 0.05 0.48 6.14 71.98 0.44 0.92 16 4 C 0.12 0.86 6.91 86.38 0.60 1.46 16 5 N -0.35 -5.12 3.69 -347.10 -1.28 -6.40 16 6 C 0.12 2.04 11.27 83.85 0.95 2.98 16 7 C -0.12 -2.97 6.85 40.82 0.28 -2.69 16 8 C 0.61 19.80 7.85 86.69 0.68 20.48 16 9 O -0.58 -22.70 17.12 -4.04 -0.07 -22.77 16 10 N -0.61 -19.02 3.32 -815.08 -2.71 -21.73 16 11 C 0.11 2.75 5.52 86.73 0.48 3.23 16 12 C -0.11 -2.52 5.28 31.78 0.17 -2.35 16 13 C -0.09 -2.89 2.67 -9.32 -0.02 -2.91 16 14 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.18 6.73 2.43 44.99 0.11 6.83 16 16 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 17 C -0.15 -5.00 9.27 71.98 0.67 -4.33 16 18 N -0.74 -36.81 4.97 -322.95 -1.61 -38.42 16 19 C -0.23 -12.83 9.93 84.03 0.83 -12.00 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.58 16 23 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.13 4.53 6.24 86.94 0.54 5.07 16 28 N -0.21 -5.11 9.77 -49.99 -0.49 -5.60 16 29 N -0.08 -1.71 13.65 37.02 0.51 -1.20 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.14 0.26 8.08 -2.38 -0.02 0.24 16 37 H 0.24 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.08 1.81 7.63 -2.39 -0.02 1.79 16 39 H 0.08 1.83 7.71 -2.38 -0.02 1.81 16 40 H 0.11 1.91 8.11 -2.39 -0.02 1.89 16 41 H 0.09 1.84 8.04 -2.39 -0.02 1.82 16 42 H 0.08 1.96 7.28 -2.39 -0.02 1.95 16 43 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.37 20.28 7.80 -92.71 -0.72 19.56 16 46 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.06 2.33 7.99 -2.39 -0.02 2.31 16 48 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -77.15 400.19 2.73 -74.41 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.24 Total: 24.86 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 7.43 Total: 13.96 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -5.30 Total: -133.94 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.66 Total: -28.49 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.15 2.73 -74.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.194 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds