Wall clock time and date at job start Tue Mar 31 2020 19:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00465 * 2 1 4 4 C 1.52997 * 109.47728 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59214 * 125.00327 * 5 4 3 7 7 C 1.36592 * 106.83634 * 180.02562 * 6 5 4 8 8 C 1.47524 * 125.77087 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99745 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.47016 * 125.64963 * 0.04879 * 10 8 7 12 12 C 1.54375 * 107.29048 * 178.86929 * 11 10 8 13 13 C 1.55158 * 102.91753 * 337.85829 * 12 11 10 14 14 H 1.09002 * 111.00437 * 277.36144 * 13 12 11 15 15 C 1.53001 * 111.00472 * 153.54740 * 13 12 11 16 16 H 1.08999 * 109.46935 * 63.17849 * 15 13 12 17 17 C 1.52999 * 109.46944 * 303.18111 * 15 13 12 18 18 N 1.46499 * 109.47193 * 183.17908 * 15 13 12 19 19 C 1.36939 * 119.99933 * 205.27576 * 18 15 13 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 15 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 15 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.47425 * 125.64856 * 179.97438 * 10 8 7 28 28 N 1.34405 * 108.46134 * 0.23745 * 7 6 5 29 29 N 1.28762 * 109.52128 * 359.59000 * 28 7 6 30 30 H 1.09005 * 109.46930 * 299.99738 * 1 2 3 31 31 H 1.09000 * 109.46856 * 59.99462 * 1 2 3 32 32 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46903 * 59.99985 * 3 2 1 34 34 H 1.09003 * 109.47616 * 300.00451 * 3 2 1 35 35 H 1.08995 * 109.47023 * 60.00106 * 4 3 2 36 36 H 1.09006 * 109.46933 * 300.00278 * 4 3 2 37 37 H 1.08000 * 126.58198 * 0.04835 * 6 5 4 38 38 H 1.08997 * 109.87912 * 298.31626 * 11 10 8 39 39 H 1.08995 * 109.88908 * 59.32598 * 11 10 8 40 40 H 1.09001 * 110.75395 * 219.49062 * 12 11 10 41 41 H 1.08993 * 110.70344 * 96.20153 * 12 11 10 42 42 H 1.08996 * 109.47098 * 60.00014 * 17 15 13 43 43 H 1.09001 * 109.46823 * 179.97438 * 17 15 13 44 44 H 1.08999 * 109.47091 * 299.99643 * 17 15 13 45 45 H 0.97001 * 119.99790 * 24.99549 * 18 15 13 46 46 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36780 * 85.32746 * 27 10 8 48 48 H 1.09005 * 110.45907 * 323.05420 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0258 3.0040 0.8866 7 6 5.3062 4.2866 0.5095 8 6 6.2381 5.2026 1.1941 9 8 6.8354 4.8324 2.1864 10 7 6.4282 6.4495 0.7191 11 6 5.7742 7.0241 -0.4656 12 6 6.2744 8.4778 -0.6060 13 6 6.7490 8.8216 0.8306 14 1 5.9106 9.1283 1.4561 15 6 7.8344 9.8996 0.8064 16 1 7.4222 10.8211 0.3951 17 6 9.0009 9.4293 -0.0649 18 7 8.3109 10.1437 2.1700 19 6 8.8635 11.3535 2.4960 20 1 8.9522 12.1261 1.7465 21 6 9.3096 11.5868 3.7896 22 7 9.2018 10.6451 4.7028 23 14 10.0641 13.2368 4.2340 24 1 8.9980 14.1590 4.7009 25 1 11.0645 13.0486 5.3152 26 1 10.7299 13.8146 3.0389 27 6 7.3253 7.4636 1.3024 28 7 4.5850 4.5749 -0.5875 29 7 3.8807 3.5499 -0.9211 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6434 0.8891 37 1 5.4413 2.4765 1.7325 38 1 6.0447 6.4513 -1.3526 39 1 4.6924 7.0137 -0.3335 40 1 5.4627 9.1376 -0.9124 41 1 7.1046 8.5333 -1.3100 42 1 8.6464 9.2477 -1.0795 43 1 9.7740 10.1975 -0.0825 44 1 9.4131 8.5079 0.3464 45 1 8.2311 9.4498 2.8431 46 1 9.5139 10.8080 5.6066 47 1 8.3406 7.3321 0.9282 48 1 7.3121 7.4033 2.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325397780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:37 Heat of formation + Delta-G solvation = 42.217771 kcal Electronic energy + Delta-G solvation = -28807.960022 eV Core-core repulsion = 24708.318260 eV Total energy + Delta-G solvation = -4099.641762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49668 -39.78618 -38.66565 -37.74472 -35.39528 -35.00338 -32.49098 -31.45043 -30.68683 -30.08320 -28.62253 -27.67702 -26.99569 -24.86278 -24.54854 -23.83170 -22.55275 -22.13694 -21.55863 -19.74530 -18.73955 -18.02416 -17.21935 -17.07349 -16.88635 -16.30152 -16.18262 -16.08197 -15.52059 -15.13870 -14.77093 -14.64921 -14.48902 -14.02881 -13.76330 -13.44217 -13.24604 -13.01772 -12.86253 -12.67093 -12.51521 -12.25030 -12.12516 -12.01811 -11.96661 -11.63716 -11.25347 -11.03774 -10.82061 -10.80995 -10.74308 -10.50973 -10.40413 -10.20376 -10.18304 -10.03744 -9.79468 -9.56922 -9.54963 -8.86830 -8.38619 -6.91688 -5.71219 -3.00290 0.81782 1.51152 1.56362 3.03770 3.07881 3.28456 3.46882 3.51869 3.53751 3.88357 4.00824 4.15659 4.38591 4.49763 4.61365 4.64680 4.69618 4.72665 4.81066 4.85312 4.94891 4.98570 5.08736 5.13143 5.18743 5.44282 5.51159 5.66273 5.72312 5.81158 5.90492 5.94098 5.95500 6.07853 6.16137 6.24924 6.33872 6.35619 6.39922 6.54014 6.60927 6.77245 6.89750 7.16834 7.58405 7.68915 7.74749 8.20889 8.47018 9.58104 10.15836 10.50290 11.51274 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.001918 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.166727 B =14595.727406 C =15053.752224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.098 3.902 7 C -0.090 4.090 8 C 0.611 3.389 9 O -0.538 6.538 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.133 4.133 13 C -0.102 4.102 14 H 0.084 0.916 15 C 0.184 3.816 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.725 5.725 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.109 3.891 28 N -0.196 5.196 29 N -0.069 5.069 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.080 0.920 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -21.581 -13.021 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.229 4.229 8 C 0.397 3.603 9 O -0.415 6.415 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.171 4.171 13 C -0.122 4.122 14 H 0.102 0.898 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.231 4.231 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.012 4.012 28 N -0.070 5.070 29 N -0.049 5.049 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.505 -21.484 -13.691 30.355 hybrid contribution 0.625 0.416 1.393 1.583 sum -15.880 -21.068 -12.297 29.108 Atomic orbital electron populations 1.22815 0.79574 1.03322 1.00584 1.87776 1.20864 1.26444 1.95639 1.22624 0.91885 0.85817 1.02480 1.21682 0.93202 0.78039 1.06632 1.50269 1.30700 1.13536 1.20477 1.23402 0.91939 0.94916 0.95610 1.21494 1.06900 0.95397 0.99136 1.16328 0.80771 0.80179 0.83030 1.90843 1.49504 1.75488 1.25645 1.48299 1.43967 1.11871 1.29078 1.22089 0.97521 0.94030 0.87563 1.22878 1.01729 0.94520 0.98002 1.22694 0.99521 0.94553 0.95447 0.89779 1.20083 0.90697 0.94187 0.87634 0.92977 1.22615 1.00741 1.01476 0.98300 1.42446 1.72652 1.15668 1.05858 1.19234 1.31861 0.91398 0.94450 0.91172 1.24740 1.02176 0.97827 0.96233 1.69668 1.52803 1.32570 1.02939 0.86214 0.78662 0.83683 0.77760 1.21828 1.21865 1.20822 1.22524 0.93328 0.85486 0.99832 1.74759 1.03673 1.18459 1.10153 1.81988 1.20611 0.90454 1.11876 0.93626 0.93526 0.88981 0.92243 0.91224 0.87333 0.86678 0.77614 0.91164 0.91062 0.90155 0.89841 0.94046 0.92776 0.93093 0.78177 0.93536 0.90210 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.39 10.70 -35.23 -0.38 -2.77 16 3 C 0.05 0.28 6.14 37.16 0.23 0.50 16 4 C 0.13 0.62 6.91 -4.04 -0.03 0.59 16 5 N -0.36 -3.06 3.69 -61.06 -0.23 -3.28 16 6 C 0.10 0.92 11.27 -16.83 -0.19 0.73 16 7 C -0.09 -1.17 6.85 -83.55 -0.57 -1.74 16 8 C 0.61 9.73 7.85 -12.48 -0.10 9.64 16 9 O -0.54 -10.06 17.12 5.28 0.09 -9.97 16 10 N -0.60 -9.29 3.33 -171.74 -0.57 -9.86 16 11 C 0.11 1.43 5.52 -3.04 -0.02 1.41 16 12 C -0.13 -1.68 6.31 -24.87 -0.16 -1.83 16 13 C -0.10 -1.65 3.07 -88.48 -0.27 -1.93 16 14 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.18 3.52 2.84 -67.93 -0.19 3.33 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.17 -2.99 8.85 37.16 0.33 -2.67 16 18 N -0.72 -17.89 5.07 -53.43 -0.27 -18.16 16 19 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.11 1.87 5.68 -2.54 -0.01 1.86 16 28 N -0.20 -2.52 9.77 32.85 0.32 -2.20 16 29 N -0.07 -0.78 13.65 60.35 0.82 0.04 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.21 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 39 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.00 5.74 -51.93 -0.30 0.70 16 42 H 0.04 0.59 6.07 -51.93 -0.32 0.28 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.91 6.04 -51.93 -0.31 0.60 16 45 H 0.38 10.17 7.06 -40.82 -0.29 9.88 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.08 1.40 5.66 -51.93 -0.29 1.11 16 48 H 0.08 1.63 7.79 -51.93 -0.40 1.23 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -34.53 392.34 -6.04 -40.57 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.32 Total: 5.96 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.12 Total: 3.94 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.80 Total: -61.14 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.29 Total: -12.74 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.53 -6.04 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.786 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds