Wall clock time and date at job start Tue Mar 31 2020 19:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00465 * 2 1 4 4 C 1.52997 * 109.47728 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59214 * 125.00327 * 5 4 3 7 7 C 1.36592 * 106.83634 * 180.02562 * 6 5 4 8 8 C 1.47524 * 125.77087 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99745 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.47016 * 125.64963 * 0.04879 * 10 8 7 12 12 C 1.54375 * 107.29048 * 178.86929 * 11 10 8 13 13 C 1.55158 * 102.91753 * 337.85829 * 12 11 10 14 14 H 1.09002 * 111.00437 * 277.36144 * 13 12 11 15 15 C 1.53001 * 111.00472 * 153.54740 * 13 12 11 16 16 H 1.08999 * 109.46935 * 63.17849 * 15 13 12 17 17 C 1.52999 * 109.46944 * 303.18111 * 15 13 12 18 18 N 1.46499 * 109.47193 * 183.17908 * 15 13 12 19 19 C 1.36939 * 119.99933 * 205.27576 * 18 15 13 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 15 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 15 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.47425 * 125.64856 * 179.97438 * 10 8 7 28 28 N 1.34405 * 108.46134 * 0.23745 * 7 6 5 29 29 N 1.28762 * 109.52128 * 359.59000 * 28 7 6 30 30 H 1.09005 * 109.46930 * 299.99738 * 1 2 3 31 31 H 1.09000 * 109.46856 * 59.99462 * 1 2 3 32 32 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46903 * 59.99985 * 3 2 1 34 34 H 1.09003 * 109.47616 * 300.00451 * 3 2 1 35 35 H 1.08995 * 109.47023 * 60.00106 * 4 3 2 36 36 H 1.09006 * 109.46933 * 300.00278 * 4 3 2 37 37 H 1.08000 * 126.58198 * 0.04835 * 6 5 4 38 38 H 1.08997 * 109.87912 * 298.31626 * 11 10 8 39 39 H 1.08995 * 109.88908 * 59.32598 * 11 10 8 40 40 H 1.09001 * 110.75395 * 219.49062 * 12 11 10 41 41 H 1.08993 * 110.70344 * 96.20153 * 12 11 10 42 42 H 1.08996 * 109.47098 * 60.00014 * 17 15 13 43 43 H 1.09001 * 109.46823 * 179.97438 * 17 15 13 44 44 H 1.08999 * 109.47091 * 299.99643 * 17 15 13 45 45 H 0.97001 * 119.99790 * 24.99549 * 18 15 13 46 46 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36780 * 85.32746 * 27 10 8 48 48 H 1.09005 * 110.45907 * 323.05420 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0258 3.0040 0.8866 7 6 5.3062 4.2866 0.5095 8 6 6.2381 5.2026 1.1941 9 8 6.8354 4.8324 2.1864 10 7 6.4282 6.4495 0.7191 11 6 5.7742 7.0241 -0.4656 12 6 6.2744 8.4778 -0.6060 13 6 6.7490 8.8216 0.8306 14 1 5.9106 9.1283 1.4561 15 6 7.8344 9.8996 0.8064 16 1 7.4222 10.8211 0.3951 17 6 9.0009 9.4293 -0.0649 18 7 8.3109 10.1437 2.1700 19 6 8.8635 11.3535 2.4960 20 1 8.9522 12.1261 1.7465 21 6 9.3096 11.5868 3.7896 22 7 9.2018 10.6451 4.7028 23 14 10.0641 13.2368 4.2340 24 1 8.9980 14.1590 4.7009 25 1 11.0645 13.0486 5.3152 26 1 10.7299 13.8146 3.0389 27 6 7.3253 7.4636 1.3024 28 7 4.5850 4.5749 -0.5875 29 7 3.8807 3.5499 -0.9211 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6434 0.8891 37 1 5.4413 2.4765 1.7325 38 1 6.0447 6.4513 -1.3526 39 1 4.6924 7.0137 -0.3335 40 1 5.4627 9.1376 -0.9124 41 1 7.1046 8.5333 -1.3100 42 1 8.6464 9.2477 -1.0795 43 1 9.7740 10.1975 -0.0825 44 1 9.4131 8.5079 0.3464 45 1 8.2311 9.4498 2.8431 46 1 9.5139 10.8080 5.6066 47 1 8.3406 7.3321 0.9282 48 1 7.3121 7.4033 2.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325397780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:36 Heat of formation + Delta-G solvation = 16.977157 kcal Electronic energy + Delta-G solvation = -28809.054537 eV Core-core repulsion = 24708.318260 eV Total energy + Delta-G solvation = -4100.736277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32947 -41.02561 -39.16106 -39.01525 -36.73962 -35.96019 -34.28564 -32.38555 -31.97074 -30.92646 -30.16625 -29.02626 -27.41720 -26.29453 -25.55379 -25.09869 -23.65892 -23.07852 -22.66086 -20.78256 -20.20301 -19.27744 -18.65683 -17.86215 -17.56556 -17.42028 -17.03015 -16.85069 -16.60401 -16.26640 -15.93567 -15.62006 -15.50372 -15.40713 -15.05846 -14.74240 -14.63648 -14.24077 -13.95776 -13.56323 -13.53254 -13.40346 -13.23464 -13.12324 -12.85010 -12.74101 -12.58708 -12.40851 -12.22440 -12.18667 -12.11357 -12.02345 -11.59186 -11.45637 -11.40126 -11.37217 -11.24189 -10.87814 -10.80243 -10.44810 -9.63655 -8.96796 -7.89305 -5.17550 0.04853 0.56270 0.87602 1.49017 1.50675 1.58917 1.88901 2.15284 2.59373 2.65160 3.04966 3.39868 3.44172 3.52840 3.68652 3.74373 3.77599 3.90564 3.95852 4.07208 4.17290 4.18306 4.34254 4.40485 4.43216 4.45777 4.51264 4.53162 4.58992 4.67982 4.68953 4.76277 4.84068 4.90657 4.97887 5.00429 5.13514 5.17253 5.26064 5.31068 5.36330 5.44474 5.57958 5.70979 5.98054 6.32724 6.42475 6.76061 7.02814 7.38381 8.16264 8.37822 9.34398 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.001918 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.166727 B =14595.727406 C =15053.752224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.119 3.881 7 C -0.118 4.118 8 C 0.607 3.393 9 O -0.577 6.577 10 N -0.604 5.604 11 C 0.115 3.885 12 C -0.119 4.119 13 C -0.094 4.094 14 H 0.071 0.929 15 C 0.179 3.821 16 H 0.057 0.943 17 C -0.161 4.161 18 N -0.739 5.739 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.268 1.268 27 C 0.115 3.885 28 N -0.209 5.209 29 N -0.081 5.081 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.237 0.763 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.041 0.959 45 H 0.371 0.629 46 H 0.248 0.752 47 H 0.074 0.926 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 -22.403 -15.165 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.134 5.134 6 C -0.039 4.039 7 C -0.257 4.257 8 C 0.395 3.605 9 O -0.457 6.457 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.156 4.156 13 C -0.114 4.114 14 H 0.089 0.911 15 C 0.071 3.929 16 H 0.075 0.925 17 C -0.221 4.221 18 N -0.379 5.379 19 C -0.365 4.365 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.227 1.227 26 H -0.193 1.193 27 C -0.007 4.007 28 N -0.083 5.083 29 N -0.062 5.062 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.253 0.747 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.092 0.908 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.614 -22.308 -15.934 32.585 hybrid contribution 0.847 0.537 1.985 2.224 sum -16.767 -21.770 -13.949 30.817 Atomic orbital electron populations 1.22982 0.78605 1.04353 1.00991 1.87750 1.21992 1.26570 1.95692 1.22557 0.92235 0.85690 1.02022 1.22044 0.92754 0.76306 1.08791 1.50442 1.29811 1.14005 1.19178 1.23796 0.90769 0.93743 0.95565 1.21200 1.07956 0.96295 1.00270 1.16759 0.80700 0.80419 0.82647 1.90809 1.51188 1.76295 1.27383 1.48381 1.43742 1.11676 1.29681 1.22191 0.97574 0.94079 0.86836 1.22882 1.02949 0.94560 0.95258 1.22488 0.97993 0.92870 0.98032 0.91096 1.20330 0.91999 0.95420 0.85177 0.92545 1.22464 0.99322 1.00280 1.00005 1.42698 1.72765 1.14546 1.07894 1.19665 1.30074 0.92323 0.94460 0.90277 1.25550 1.03900 1.01266 0.96520 1.69843 1.54885 1.34679 1.02980 0.85165 0.77568 0.79734 0.77466 1.21593 1.22707 1.19270 1.22282 0.93734 0.86902 0.97764 1.74714 1.03986 1.19344 1.10281 1.81915 1.20639 0.90909 1.12719 0.93211 0.93158 0.87721 0.92425 0.92051 0.85995 0.83768 0.74724 0.89965 0.90598 0.87662 0.88480 0.90080 0.94479 0.93989 0.79761 0.94301 0.90754 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.18 10.70 -148.98 -1.59 -5.78 16 3 C 0.05 0.49 6.14 71.98 0.44 0.93 16 4 C 0.12 0.85 6.91 86.38 0.60 1.45 16 5 N -0.35 -5.08 3.69 -347.10 -1.28 -6.36 16 6 C 0.12 2.01 11.27 83.85 0.95 2.96 16 7 C -0.12 -2.95 6.85 40.81 0.28 -2.67 16 8 C 0.61 19.53 7.85 86.69 0.68 20.21 16 9 O -0.58 -22.26 17.12 -4.02 -0.07 -22.33 16 10 N -0.60 -18.71 3.33 -815.52 -2.71 -21.42 16 11 C 0.12 2.78 5.52 86.75 0.48 3.25 16 12 C -0.12 -2.68 6.31 31.80 0.20 -2.48 16 13 C -0.09 -3.00 3.07 -9.41 -0.03 -3.03 16 14 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 15 C 0.18 6.74 2.84 44.99 0.13 6.87 16 16 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 17 C -0.16 -5.42 8.85 71.98 0.64 -4.78 16 18 N -0.74 -37.19 5.07 -322.94 -1.64 -38.83 16 19 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 23 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 C 0.12 4.07 5.68 86.85 0.49 4.56 16 28 N -0.21 -5.10 9.77 -49.99 -0.49 -5.59 16 29 N -0.08 -1.71 13.65 37.02 0.51 -1.21 16 30 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.14 0.25 8.08 -2.38 -0.02 0.23 16 37 H 0.24 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.08 1.84 7.74 -2.39 -0.02 1.82 16 39 H 0.08 1.79 7.60 -2.39 -0.02 1.77 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 1.96 5.74 -2.39 -0.01 1.95 16 42 H 0.08 2.07 6.07 -2.39 -0.01 2.06 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.48 6.04 -2.39 -0.01 1.47 16 45 H 0.37 20.50 7.06 -92.71 -0.65 19.84 16 46 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 47 H 0.07 2.68 5.66 -2.39 -0.01 2.67 16 48 H 0.05 1.99 7.79 -2.38 -0.02 1.97 16 Total: -1.00 -77.17 392.34 2.76 -74.41 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.32 Total: 26.74 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 7.40 Total: 12.36 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -5.33 Total: -134.33 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.66 Total: -28.11 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -77.17 2.76 -74.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.391 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds