Wall clock time and date at job start Tue Mar 31 2020 19:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99806 * 2 1 4 4 C 1.53005 * 109.46799 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.34808 * 126.59727 * 125.00155 * 5 4 3 7 7 C 1.36588 * 106.84013 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.77127 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00012 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.47020 * 125.64938 * 359.94926 * 10 8 7 12 12 C 1.54320 * 107.27215 * 181.09890 * 11 10 8 13 13 C 1.55157 * 102.94345 * 22.19283 * 12 11 10 14 14 H 1.08996 * 111.03319 * 82.58920 * 13 12 11 15 15 C 1.53003 * 111.00601 * 206.42528 * 13 12 11 16 16 H 1.08996 * 109.47176 * 56.18058 * 15 13 12 17 17 C 1.52996 * 109.46940 * 176.18558 * 15 13 12 18 18 N 1.46506 * 109.46809 * 296.18309 * 15 13 12 19 19 C 1.36930 * 119.99810 * 155.00461 * 18 15 13 20 20 H 1.08004 * 120.00268 * 359.97438 * 19 18 15 21 21 C 1.38817 * 120.00242 * 179.97438 * 19 18 15 22 22 N 1.31614 * 120.00037 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99395 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47041 * 90.00554 * 23 21 19 25 25 H 1.48502 * 109.46529 * 209.99826 * 23 21 19 26 26 H 1.48491 * 109.47586 * 330.00140 * 23 21 19 27 27 C 1.47426 * 125.64760 * 179.97438 * 10 8 7 28 28 N 1.34397 * 108.46215 * 0.23988 * 7 6 5 29 29 N 1.28763 * 109.52358 * 359.59031 * 28 7 6 30 30 H 1.09002 * 109.46973 * 299.99319 * 1 2 3 31 31 H 1.09001 * 109.47374 * 59.99627 * 1 2 3 32 32 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46520 * 60.00584 * 3 2 1 34 34 H 1.08996 * 109.47313 * 299.99942 * 3 2 1 35 35 H 1.08996 * 109.47277 * 60.00538 * 4 3 2 36 36 H 1.08996 * 109.47132 * 300.00042 * 4 3 2 37 37 H 1.08000 * 126.57786 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.88387 * 300.52015 * 11 10 8 39 39 H 1.09004 * 109.87836 * 61.52826 * 11 10 8 40 40 H 1.09008 * 110.71991 * 263.82923 * 12 11 10 41 41 H 1.09003 * 110.72072 * 140.56087 * 12 11 10 42 42 H 1.09000 * 109.47138 * 174.91758 * 17 15 13 43 43 H 1.08994 * 109.47679 * 54.91467 * 17 15 13 44 44 H 1.09008 * 109.46951 * 294.91278 * 17 15 13 45 45 H 0.97001 * 119.99837 * 334.99842 * 18 15 13 46 46 H 0.97005 * 119.99689 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.37036 * 36.99267 * 27 10 8 48 48 H 1.09007 * 110.45494 * 274.71553 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0257 3.0042 0.8865 7 6 5.3060 4.2867 0.5093 8 6 6.2380 5.2028 1.1940 9 8 6.8346 4.8329 2.1869 10 7 6.4273 6.4500 0.7195 11 6 5.7740 7.0242 -0.4658 12 6 6.3159 8.4589 -0.6377 13 6 7.6646 8.4151 0.1280 14 1 8.4553 7.9983 -0.4959 15 6 8.0495 9.8042 0.6409 16 1 7.2452 10.1978 1.2623 17 6 9.3320 9.7047 1.4693 18 7 8.2712 10.7006 -0.4966 19 6 8.1204 12.0528 -0.3421 20 1 7.8377 12.4585 0.6180 21 6 8.3310 12.9022 -1.4197 22 7 8.1856 14.2018 -1.2714 23 14 8.8207 12.2005 -3.0802 24 1 7.5998 11.9036 -3.8717 25 1 9.6546 13.1897 -3.8090 26 1 9.5969 10.9505 -2.8800 27 6 7.3243 7.4642 1.3028 28 7 4.5850 4.5750 -0.5876 29 7 3.8806 3.5500 -0.9212 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 5.4403 2.4770 1.7330 38 1 6.0146 6.4290 -1.3466 39 1 4.6942 7.0485 -0.3186 40 1 5.6389 9.1837 -0.1853 41 1 6.4777 8.6863 -1.6914 42 1 9.6559 10.7043 1.7590 43 1 10.1119 9.2278 0.8757 44 1 9.1417 9.1110 2.3635 45 1 8.5249 10.3361 -1.3590 46 1 8.3331 14.7954 -2.0243 47 1 8.2305 6.9943 1.6852 48 1 6.8162 8.0100 2.0979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325397781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:38 Heat of formation + Delta-G solvation = 15.106817 kcal Electronic energy + Delta-G solvation = -28714.686660 eV Core-core repulsion = 24613.869280 eV Total energy + Delta-G solvation = -4100.817381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.32270 -40.97475 -39.12931 -38.98592 -36.90645 -35.96953 -34.25821 -32.50764 -32.03728 -31.09737 -30.86826 -28.87813 -27.41833 -26.31496 -25.18029 -25.01834 -23.31521 -22.88499 -22.57944 -21.29989 -20.64834 -19.55483 -18.78961 -17.77904 -17.63740 -17.43816 -17.06471 -16.81930 -16.48689 -16.31201 -15.99258 -15.69453 -15.51724 -15.10416 -14.92704 -14.67794 -14.61804 -14.18198 -13.96465 -13.93921 -13.52947 -13.46750 -13.35896 -13.21831 -13.03482 -12.83122 -12.70684 -12.42761 -12.34297 -12.15283 -11.97517 -11.88542 -11.69600 -11.63742 -11.43389 -11.36772 -11.26921 -10.92926 -10.80960 -10.44011 -9.68221 -9.26069 -7.96304 -5.28363 0.06629 0.56774 0.89262 1.41934 1.44676 1.51708 1.87575 2.16100 2.53522 2.65051 3.04816 3.35413 3.37348 3.44281 3.65513 3.68399 3.76122 3.85394 3.91246 4.07462 4.08850 4.17821 4.34151 4.35340 4.42478 4.45138 4.50452 4.54061 4.58563 4.61296 4.70401 4.75667 4.83375 4.83782 4.95214 4.99325 5.08226 5.16068 5.18565 5.32252 5.33756 5.39980 5.61930 5.84452 5.97252 6.27600 6.38661 6.76124 7.02991 7.14702 7.91222 8.10525 9.25415 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.002017 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.098481 B =13880.975538 C =14705.712264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.121 3.879 7 C -0.122 4.122 8 C 0.615 3.385 9 O -0.568 6.568 10 N -0.605 5.605 11 C 0.120 3.880 12 C -0.120 4.120 13 C -0.096 4.096 14 H 0.087 0.913 15 C 0.186 3.814 16 H 0.048 0.952 17 C -0.161 4.161 18 N -0.746 5.746 19 C -0.219 4.219 20 H 0.057 0.943 21 C -0.066 4.066 22 N -0.987 5.987 23 Si 0.951 3.049 24 H -0.277 1.277 25 H -0.302 1.302 26 H -0.252 1.252 27 C 0.121 3.879 28 N -0.216 5.216 29 N -0.087 5.087 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.365 0.635 46 H 0.255 0.745 47 H 0.084 0.916 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.779 -34.359 3.801 36.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.036 4.036 7 C -0.261 4.261 8 C 0.403 3.597 9 O -0.447 6.447 10 N -0.336 5.336 11 C -0.002 4.002 12 C -0.158 4.158 13 C -0.116 4.116 14 H 0.106 0.894 15 C 0.078 3.922 16 H 0.066 0.934 17 C -0.221 4.221 18 N -0.390 5.390 19 C -0.350 4.350 20 H 0.075 0.925 21 C -0.257 4.257 22 N -0.638 5.638 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.230 1.230 26 H -0.176 1.176 27 C -0.001 4.001 28 N -0.089 5.089 29 N -0.067 5.067 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.258 0.742 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.198 0.802 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.260 -34.267 3.193 36.882 hybrid contribution 0.551 0.459 -0.313 0.782 sum -12.709 -33.808 2.881 36.233 Atomic orbital electron populations 1.22979 0.78634 1.04353 1.00965 1.87751 1.21959 1.26571 1.95689 1.22562 0.92355 0.85674 1.01967 1.22038 0.92659 0.76351 1.08806 1.50485 1.29858 1.13962 1.19235 1.23853 0.90584 0.93636 0.95541 1.21338 1.08091 0.96537 1.00177 1.16567 0.80541 0.79937 0.82667 1.90787 1.50825 1.76232 1.26901 1.48329 1.43901 1.11886 1.29473 1.22070 0.97349 0.93531 0.87254 1.22623 0.96239 0.95128 1.01772 1.22528 0.97895 0.94603 0.96581 0.89439 1.20276 0.95707 0.87847 0.88374 0.93363 1.22341 0.98982 1.00665 1.00068 1.42704 1.84274 1.02474 1.09503 1.18995 1.36854 0.82887 0.96301 0.92533 1.25443 1.03130 0.95367 1.01765 1.69886 1.58639 1.03296 1.31951 0.85458 0.78238 0.77948 0.80429 1.20351 1.22952 1.17619 1.22236 0.93933 0.88245 0.95683 1.74755 1.04142 1.19454 1.10569 1.81967 1.20823 0.91027 1.12911 0.93095 0.93344 0.87707 0.92248 0.92374 0.86246 0.83444 0.74236 0.90619 0.90738 0.90933 0.89943 0.94812 0.92911 0.91098 0.80210 0.93611 0.89789 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.86 10.70 -148.98 -1.59 -5.45 16 3 C 0.05 0.43 6.14 71.98 0.44 0.88 16 4 C 0.12 0.70 6.91 86.38 0.60 1.29 16 5 N -0.35 -4.56 3.69 -347.10 -1.28 -5.84 16 6 C 0.12 1.69 11.27 83.85 0.95 2.63 16 7 C -0.12 -2.68 6.85 40.82 0.28 -2.41 16 8 C 0.62 16.34 7.85 86.69 0.68 17.02 16 9 O -0.57 -17.20 17.12 -4.02 -0.07 -17.27 16 10 N -0.60 -15.88 3.33 -815.50 -2.71 -18.59 16 11 C 0.12 2.99 5.52 86.73 0.48 3.47 16 12 C -0.12 -3.29 6.19 31.78 0.20 -3.09 16 13 C -0.10 -2.72 2.63 -9.39 -0.02 -2.74 16 14 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.19 6.58 2.40 44.99 0.11 6.69 16 16 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 17 C -0.16 -5.27 9.23 71.98 0.66 -4.60 16 18 N -0.75 -33.13 4.68 -322.93 -1.51 -34.64 16 19 C -0.22 -12.19 10.41 84.04 0.87 -11.31 16 20 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.99 -63.22 13.97 21.65 0.30 -62.92 16 23 Si 0.95 45.19 27.73 68.60 1.90 47.09 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 27 C 0.12 3.17 5.52 86.86 0.48 3.65 16 28 N -0.22 -5.12 9.77 -50.00 -0.49 -5.61 16 29 N -0.09 -1.80 13.65 37.02 0.51 -1.29 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 36 H 0.15 -0.05 8.08 -2.39 -0.02 -0.07 16 37 H 0.24 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.08 1.86 7.62 -2.39 -0.02 1.84 16 39 H 0.07 1.84 7.72 -2.38 -0.02 1.82 16 40 H 0.07 2.15 8.04 -2.38 -0.02 2.13 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.90 7.60 -2.38 -0.02 1.88 16 45 H 0.36 15.61 5.66 -92.71 -0.52 15.08 16 46 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 47 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 48 H 0.08 1.96 8.03 -2.38 -0.02 1.94 16 Total: -1.00 -75.95 397.52 2.86 -73.09 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.37 Total: 21.94 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.44 Total: 9.48 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -5.19 Total: -128.89 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.66 Total: -22.72 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -75.95 2.86 -73.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325397781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.198 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds