Wall clock time and date at job start Tue Mar 31 2020 20:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47375 * 2 1 4 4 N 1.28522 * 124.44530 * 269.97520 * 3 2 1 5 5 C 1.31135 * 109.06008 * 179.73360 * 4 3 2 6 6 C 1.50700 * 127.11097 * 180.29121 * 5 4 3 7 7 C 1.40921 * 105.77776 * 0.43177 * 5 4 3 8 8 C 1.47794 * 127.23691 * 179.84019 * 7 5 4 9 9 O 1.21557 * 120.00368 * 359.70634 * 8 7 5 10 10 N 1.34778 * 120.00123 * 179.70578 * 8 7 5 11 11 C 1.46501 * 120.00224 * 185.08655 * 10 8 7 12 12 C 1.53001 * 109.49614 * 298.14988 * 11 10 8 13 13 O 1.42899 * 109.47217 * 305.57890 * 12 11 10 14 14 C 1.53039 * 109.49702 * 58.21676 * 11 10 8 15 15 C 1.53039 * 109.54048 * 58.61962 * 14 11 10 16 16 C 1.53190 * 109.33713 * 61.34521 * 15 14 11 17 17 N 1.46927 * 108.77805 * 305.41671 * 16 15 14 18 18 C 1.36937 * 120.60684 * 233.53731 * 17 16 15 19 19 H 1.08001 * 120.00068 * 29.95020 * 18 17 16 20 20 C 1.38819 * 119.99795 * 209.95055 * 18 17 16 21 21 N 1.31612 * 120.00026 * 11.93788 * 20 18 17 22 22 Si 1.86802 * 119.99504 * 191.93907 * 20 18 17 23 23 H 1.48495 * 109.47183 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46571 * 120.00340 * 22 20 18 25 25 H 1.48498 * 109.46984 * 239.99593 * 22 20 18 26 26 C 1.46927 * 118.76376 * 53.55064 * 17 16 15 27 27 N 1.28590 * 124.44835 * 89.99650 * 3 2 1 28 28 H 1.08998 * 109.47462 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47412 * 300.00494 * 1 2 3 30 30 H 1.09005 * 109.46599 * 60.00022 * 1 2 3 31 31 H 1.09005 * 109.47412 * 239.99506 * 2 1 3 32 32 H 1.09010 * 109.46742 * 119.99513 * 2 1 3 33 33 H 1.08999 * 109.47247 * 270.16856 * 6 5 4 34 34 H 1.09002 * 109.47248 * 30.16679 * 6 5 4 35 35 H 1.09001 * 109.47473 * 150.16727 * 6 5 4 36 36 H 0.97003 * 119.99520 * 5.08853 * 10 8 7 37 37 H 1.09004 * 109.47032 * 65.58335 * 12 11 10 38 38 H 1.09002 * 109.46898 * 185.57808 * 12 11 10 39 39 H 0.96698 * 113.99938 * 179.97438 * 13 12 11 40 40 H 1.09003 * 109.46012 * 298.59853 * 14 11 10 41 41 H 1.09004 * 109.45987 * 178.64307 * 14 11 10 42 42 H 1.08995 * 109.49731 * 181.31516 * 15 14 11 43 43 H 1.09001 * 109.49458 * 301.38221 * 15 14 11 44 44 H 1.08997 * 109.58696 * 65.17296 * 16 15 14 45 45 H 1.09002 * 109.58265 * 185.59188 * 16 15 14 46 46 H 0.96998 * 119.99993 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.59041 * 186.62428 * 26 17 16 48 48 H 1.09003 * 109.58386 * 66.20419 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2611 2.0663 -1.0599 5 6 2.6771 3.2603 -0.7120 6 6 3.0682 4.3900 -1.6295 7 6 2.6858 3.2675 0.6972 8 6 3.0802 4.3826 1.5834 9 8 3.4528 5.4363 1.1054 10 7 3.0268 4.2312 2.9216 11 6 3.3100 5.3693 3.7995 12 6 4.7474 5.8427 3.5741 13 8 5.6434 4.7425 3.7436 14 6 2.3408 6.5110 3.4844 15 6 0.9014 6.0286 3.6780 16 6 0.6984 5.6108 5.1377 17 7 1.7212 4.6173 5.4920 18 6 1.3635 3.4090 6.0279 19 1 0.4135 2.9642 5.7707 20 6 2.2218 2.7559 6.9018 21 7 3.2621 3.3902 7.3994 22 14 1.9003 0.9766 7.3713 23 1 0.6767 0.4958 6.6808 24 1 3.0584 0.1405 6.9651 25 1 1.7107 0.8791 8.8409 26 6 3.1348 4.9446 5.2609 27 7 2.2608 2.0669 1.0604 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.1325 4.3231 -1.8550 34 1 2.4958 4.3216 -2.5546 35 1 2.8591 5.3426 -1.1426 36 1 2.8008 3.3685 3.3034 37 1 4.8452 6.2387 2.5632 38 1 4.9901 6.6233 4.2951 39 1 6.5744 4.9700 3.6148 40 1 2.4807 6.8316 2.4520 41 1 2.5363 7.3485 4.1541 42 1 0.2111 6.8351 3.4309 43 1 0.7128 5.1757 3.0259 44 1 0.7971 6.4827 5.7844 45 1 -0.2931 5.1743 5.2583 46 1 3.8617 2.9339 8.0103 47 1 3.7506 4.0683 5.4632 48 1 3.4325 5.7624 5.9172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325873647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:07 Heat of formation + Delta-G solvation = 44.335116 kcal Electronic energy + Delta-G solvation = -31672.182043 eV Core-core repulsion = 27572.632096 eV Total energy + Delta-G solvation = -4099.549947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.51815 -39.81464 -37.33879 -35.83603 -35.07933 -33.74831 -33.01057 -32.32502 -31.38407 -30.15072 -29.68639 -27.89343 -25.41686 -25.05029 -25.01350 -22.73449 -22.18906 -20.99484 -20.88969 -20.04275 -18.51204 -17.60831 -17.01055 -16.70806 -16.67432 -16.41179 -15.20383 -14.85057 -14.57993 -14.51818 -14.12825 -13.98871 -13.84897 -13.50180 -13.32026 -13.10042 -13.01724 -12.80394 -12.60410 -12.41692 -12.28883 -12.27369 -11.87196 -11.64401 -11.46917 -11.32662 -11.11287 -10.92600 -10.81749 -10.74078 -10.43446 -10.17101 -10.14120 -9.94173 -9.86586 -9.62120 -9.56526 -9.08933 -8.99916 -8.50358 -8.31051 -6.64690 -5.78395 -3.25201 1.56104 2.05144 2.19621 3.36584 3.44129 3.45845 3.60996 3.68363 4.04183 4.48251 4.61438 4.65932 4.73104 4.87002 4.88520 5.13315 5.31224 5.36927 5.43093 5.46191 5.57860 5.63804 5.70795 5.74622 5.78694 5.80016 5.87761 5.88924 6.00644 6.04492 6.14662 6.35255 6.35897 6.42002 6.52701 6.54568 6.65717 6.69820 6.84713 7.01009 7.10336 7.34502 7.69260 7.80428 8.10974 8.15724 8.36302 8.46675 8.73375 9.20726 9.82830 10.40461 11.29237 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.005238 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.463420 B = 5344.570953 C = 6967.020443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.146 5.146 4 N -0.300 5.300 5 C 0.054 3.946 6 C -0.064 4.064 7 C -0.040 4.040 8 C 0.607 3.393 9 O -0.545 6.545 10 N -0.666 5.666 11 C 0.155 3.845 12 C 0.069 3.931 13 O -0.559 6.559 14 C -0.121 4.121 15 C -0.129 4.129 16 C 0.143 3.857 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.174 3.826 27 N -0.240 5.240 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.414 0.586 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.367 0.633 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.018 0.982 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.107 0.893 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -0.900 -15.032 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.048 5.048 4 N -0.141 5.141 5 C -0.110 4.110 6 C -0.123 4.123 7 C -0.203 4.203 8 C 0.389 3.611 9 O -0.423 6.423 10 N -0.314 5.314 11 C 0.067 3.933 12 C -0.010 4.010 13 O -0.363 6.363 14 C -0.159 4.159 15 C -0.168 4.168 16 C 0.017 3.983 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.048 3.952 27 N -0.087 5.087 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.212 0.788 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.125 0.875 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.288 -1.847 -15.043 15.211 hybrid contribution 0.559 -0.342 0.460 0.801 sum -0.729 -2.189 -14.583 14.764 Atomic orbital electron populations 1.22190 0.92997 1.03897 1.03877 1.22045 0.96189 0.74308 1.05911 1.48084 1.44163 1.13334 0.99226 1.73854 1.19311 1.05272 1.15622 1.23221 1.01270 0.93699 0.92822 1.20171 1.01606 0.93921 0.96557 1.23167 1.08989 0.93887 0.94292 1.16619 0.77850 0.84641 0.81950 1.90644 1.48985 1.27025 1.75666 1.45712 1.66933 1.14870 1.03915 1.21326 0.91159 0.86086 0.94682 1.22603 0.89884 0.88525 1.00014 1.86581 1.19054 1.36159 1.94476 1.21742 0.95199 0.96918 1.02062 1.21928 0.95307 0.99761 0.99832 1.20965 0.93207 0.92327 0.91817 1.44016 1.00461 1.14375 1.72386 1.19187 1.04147 0.94879 1.20055 0.91730 1.25111 0.98710 0.98808 0.96653 1.69956 1.16434 1.35265 1.32772 0.86238 0.77623 0.85113 0.77889 1.20298 1.21555 1.21742 1.21066 0.86875 1.01394 0.85897 1.74498 1.14284 1.04552 1.15404 0.89567 0.91010 0.91522 0.87386 0.87049 0.90435 0.91130 0.88595 0.74930 0.92169 0.93733 0.78794 0.91001 0.91823 0.93125 0.92582 0.96418 0.92934 0.93581 0.87550 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.13 1.29 7.24 -4.05 -0.03 1.26 16 3 N -0.15 -2.11 3.94 -10.61 -0.04 -2.15 16 4 N -0.30 -4.49 12.01 33.92 0.41 -4.08 16 5 C 0.05 0.84 7.39 -81.88 -0.61 0.24 16 6 C -0.06 -0.79 9.99 36.01 0.36 -0.43 16 7 C -0.04 -0.70 7.21 -82.68 -0.60 -1.30 16 8 C 0.61 11.39 7.20 -12.35 -0.09 11.30 16 9 O -0.55 -10.31 11.52 5.32 0.06 -10.25 16 10 N -0.67 -13.18 3.94 -48.44 -0.19 -13.37 16 11 C 0.16 3.05 0.45 -131.70 -0.06 2.99 16 12 C 0.07 1.22 5.65 37.16 0.21 1.43 16 13 O -0.56 -10.10 13.08 -35.23 -0.46 -10.56 16 14 C -0.12 -2.19 4.45 -26.69 -0.12 -2.31 16 15 C -0.13 -2.37 5.93 -26.61 -0.16 -2.53 16 16 C 0.14 3.00 6.52 -3.71 -0.02 2.98 16 17 N -0.59 -14.31 2.91 -172.32 -0.50 -14.81 16 18 C -0.25 -6.72 9.59 -15.06 -0.14 -6.87 16 19 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 20 C 0.01 0.17 5.03 -17.43 -0.09 0.08 16 21 N -0.90 -25.58 11.02 55.49 0.61 -24.97 16 22 Si 0.90 21.42 29.57 -169.99 -5.03 16.39 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.17 4.07 3.82 -3.71 -0.01 4.06 16 27 N -0.24 -4.13 11.85 33.42 0.40 -3.74 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.26 6.77 -51.93 -0.35 0.91 16 36 H 0.41 8.98 8.25 -40.82 -0.34 8.64 16 37 H 0.06 1.06 6.31 -51.93 -0.33 0.73 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.37 4.75 9.12 45.56 0.42 5.16 16 40 H 0.07 1.30 6.26 -51.93 -0.32 0.97 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.10 7.49 -51.93 -0.39 0.71 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.11 2.85 5.89 -51.93 -0.31 2.55 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -32.23 383.76 -6.59 -38.82 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.65 Total: 13.10 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.98 Total: 9.83 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.68 Total: -63.12 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.40 Total: -20.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.23 -6.59 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325873647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.160 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds