Wall clock time and date at job start Tue Mar 31 2020 20:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47259 * 2 1 4 4 N 1.28518 * 124.44436 * 89.97221 * 3 2 1 5 5 C 1.31130 * 109.06109 * 180.02562 * 4 3 2 6 6 C 1.50694 * 127.11561 * 180.02562 * 5 4 3 7 7 C 1.40926 * 105.77518 * 0.02562 * 5 4 3 8 8 C 1.47798 * 127.24135 * 179.97438 * 7 5 4 9 9 O 1.21564 * 119.99398 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00298 * 180.02562 * 8 7 5 11 11 C 1.46507 * 120.00129 * 175.14316 * 10 8 7 12 12 C 1.53000 * 109.49843 * 63.36555 * 11 10 8 13 13 O 1.42902 * 109.46969 * 54.09821 * 12 11 10 14 14 C 1.53040 * 109.49415 * 303.30420 * 11 10 8 15 15 C 1.53041 * 109.53938 * 301.41305 * 14 11 10 16 16 C 1.53201 * 109.31089 * 298.63662 * 15 14 11 17 17 N 1.46926 * 108.77313 * 54.63499 * 16 15 14 18 18 C 1.36938 * 120.63230 * 126.39238 * 17 16 15 19 19 H 1.07996 * 119.99737 * 323.78963 * 18 17 16 20 20 C 1.38810 * 120.00031 * 143.78812 * 18 17 16 21 21 N 1.31617 * 120.00222 * 2.28723 * 20 18 17 22 22 Si 1.86804 * 119.99907 * 182.29012 * 20 18 17 23 23 H 1.48502 * 109.46973 * 59.99758 * 22 20 18 24 24 H 1.48493 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47031 * 300.00126 * 22 20 18 26 26 C 1.46929 * 118.73759 * 306.39049 * 17 16 15 27 27 N 1.28587 * 124.44341 * 270.30976 * 3 2 1 28 28 H 1.09000 * 109.47288 * 300.00687 * 1 2 3 29 29 H 1.08998 * 109.47065 * 60.00204 * 1 2 3 30 30 H 1.08995 * 109.47687 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47288 * 239.99313 * 2 1 3 32 32 H 1.09009 * 109.46613 * 119.99778 * 2 1 3 33 33 H 1.09003 * 109.47261 * 269.97383 * 6 5 4 34 34 H 1.09002 * 109.47095 * 29.97410 * 6 5 4 35 35 H 1.09000 * 109.47129 * 149.97598 * 6 5 4 36 36 H 0.96995 * 120.00002 * 354.85415 * 10 8 7 37 37 H 1.08999 * 109.47304 * 174.10238 * 12 11 10 38 38 H 1.09003 * 109.46972 * 294.09924 * 12 11 10 39 39 H 0.96704 * 113.99709 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.46088 * 61.43547 * 14 11 10 41 41 H 1.08999 * 109.45700 * 181.39330 * 14 11 10 42 42 H 1.09002 * 109.49870 * 58.58391 * 15 14 11 43 43 H 1.09001 * 109.50134 * 178.68830 * 15 14 11 44 44 H 1.09001 * 109.58433 * 174.41794 * 16 15 14 45 45 H 1.09003 * 109.58510 * 294.85068 * 16 15 14 46 46 H 0.97004 * 120.00215 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58975 * 293.82008 * 26 17 16 48 48 H 1.09000 * 109.58478 * 173.39764 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6813 3.2588 0.7120 6 6 3.0797 4.3860 1.6294 7 6 2.6843 3.2680 -0.6972 8 6 3.0776 4.3834 -1.5836 9 8 3.4491 5.4376 -1.1055 10 7 3.0234 4.2321 -2.9217 11 6 3.3105 5.3693 -3.7997 12 6 4.7611 5.8137 -3.6019 13 8 5.6314 4.6957 -3.7880 14 6 2.3704 6.5278 -3.4588 15 6 0.9181 6.0741 -3.6239 16 6 0.6767 5.6682 -5.0814 17 7 1.6720 4.6565 -5.4615 18 6 1.2798 3.4576 -5.9945 19 1 0.3764 2.9807 -5.6442 20 6 2.0433 2.8554 -6.9850 21 7 3.1677 3.4139 -7.3801 22 14 1.4751 1.2522 -7.7572 23 1 0.1505 1.4535 -8.3978 24 1 2.4593 0.8200 -8.7817 25 1 1.3632 0.2089 -6.7064 26 6 3.0962 4.9555 -5.2589 27 7 2.2554 2.0688 -1.0604 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.2069 5.0004 1.8504 34 1 3.4795 3.9757 2.5567 35 1 3.8409 4.9973 1.1446 36 1 2.7984 3.3694 -3.3035 37 1 5.0057 6.5893 -4.3276 38 1 4.8861 6.2076 -2.5932 39 1 6.5691 4.9044 -3.6770 40 1 2.5382 6.8405 -2.4282 41 1 2.5677 7.3647 -4.1287 42 1 0.7271 5.2213 -2.9724 43 1 0.2488 6.8924 -3.3586 44 1 -0.3253 5.2514 -5.1834 45 1 0.7790 6.5415 -5.7256 46 1 3.7015 2.9929 -8.0721 47 1 3.3958 5.7706 -5.9176 48 1 3.6906 4.0685 -5.4782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325873648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:09 Heat of formation + Delta-G solvation = 19.687409 kcal Electronic energy + Delta-G solvation = -31629.703971 eV Core-core repulsion = 27529.085220 eV Total energy + Delta-G solvation = -4100.618751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.69279 -41.31963 -38.87392 -37.33118 -36.05377 -35.39231 -34.46912 -33.78790 -32.46040 -31.86015 -31.28695 -28.90668 -27.32122 -26.58859 -26.19045 -23.98125 -23.69533 -22.44114 -22.05485 -21.59217 -20.03617 -19.02663 -18.56421 -18.17600 -18.04872 -17.55684 -16.95010 -16.34382 -16.03328 -15.78635 -15.69979 -15.34957 -15.02690 -14.85795 -14.71839 -14.62349 -14.27488 -14.05197 -13.95998 -13.80127 -13.52039 -13.41483 -13.06261 -13.02425 -12.82911 -12.70559 -12.59040 -12.50696 -12.36218 -12.27349 -12.01230 -11.95591 -11.67967 -11.49537 -11.36717 -11.27866 -11.04151 -10.55311 -10.46870 -10.24046 -9.78663 -8.51178 -7.82997 -5.39791 0.28147 0.86774 1.22299 1.47922 1.49215 1.55656 2.21681 2.28196 2.51503 2.88917 3.32399 3.38768 3.64858 3.71991 3.85404 3.89162 3.95030 4.12469 4.19385 4.25011 4.26945 4.40219 4.48346 4.51365 4.62794 4.65648 4.67636 4.78933 4.79887 4.85019 4.87729 4.95618 4.99937 5.00831 5.11387 5.12262 5.22463 5.32601 5.36036 5.50174 5.60692 5.65894 5.74670 5.83207 6.48368 6.65691 6.98347 7.09042 7.20317 7.25832 7.86439 8.42623 9.20338 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.005088 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.015604 B = 5502.267487 C = 7136.985285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 N -0.135 5.135 4 N -0.298 5.298 5 C 0.049 3.951 6 C -0.060 4.060 7 C -0.069 4.069 8 C 0.608 3.392 9 O -0.550 6.550 10 N -0.670 5.670 11 C 0.156 3.844 12 C 0.076 3.924 13 O -0.581 6.581 14 C -0.116 4.116 15 C -0.117 4.117 16 C 0.141 3.859 17 N -0.605 5.605 18 C -0.263 4.263 19 H 0.059 0.941 20 C -0.035 4.035 21 N -0.926 5.926 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.277 1.277 26 C 0.189 3.811 27 N -0.261 5.261 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.388 0.612 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.021 0.979 46 H 0.250 0.750 47 H 0.010 0.990 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -1.515 16.533 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 N -0.039 5.039 4 N -0.140 5.140 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.231 4.231 8 C 0.392 3.608 9 O -0.428 6.428 10 N -0.317 5.317 11 C 0.068 3.932 12 C -0.003 4.003 13 O -0.387 6.387 14 C -0.154 4.154 15 C -0.156 4.156 16 C 0.016 3.984 17 N -0.328 5.328 18 C -0.393 4.393 19 H 0.077 0.923 20 C -0.232 4.232 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.203 1.203 26 C 0.062 3.938 27 N -0.110 5.110 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.471 -2.412 16.567 16.807 hybrid contribution 0.529 -0.205 -1.119 1.255 sum -0.942 -2.618 15.448 15.697 Atomic orbital electron populations 1.22159 0.92056 1.05582 1.02395 1.22601 0.96968 0.72362 1.07865 1.48664 1.42631 1.14161 0.98480 1.73854 1.19225 1.05280 1.15643 1.23679 1.00690 0.94653 0.92374 1.20247 1.02938 0.91981 0.96724 1.23084 1.10775 0.94116 0.95106 1.16709 0.77440 0.85057 0.81567 1.90622 1.49366 1.27196 1.75610 1.45670 1.67462 1.14209 1.04393 1.21243 0.92887 0.86520 0.92537 1.22514 0.89217 0.88224 1.00376 1.86542 1.21090 1.36362 1.94726 1.21718 0.94573 0.96444 1.02644 1.21801 0.96215 1.00124 0.97463 1.21090 0.92668 0.91361 0.93303 1.44130 1.01195 1.14358 1.73086 1.19258 1.08801 0.97627 1.13613 0.92332 1.25965 0.97774 1.02178 0.97268 1.70054 1.14483 1.40982 1.31568 0.85442 0.77357 0.80096 0.78093 1.20422 1.22109 1.20271 1.20773 0.85847 0.99266 0.87881 1.74452 1.14930 1.04885 1.16734 0.91936 0.93416 0.86297 0.86158 0.84411 0.89283 0.88884 0.89498 0.76370 0.92492 0.91827 0.76351 0.90283 0.90736 0.94172 0.90232 0.93062 0.96142 0.94064 0.97233 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.12 2.06 7.24 86.38 0.63 2.69 16 3 N -0.14 -3.76 3.94 -187.48 -0.74 -4.50 16 4 N -0.30 -8.52 12.01 -46.59 -0.56 -9.08 16 5 C 0.05 1.49 7.39 43.32 0.32 1.81 16 6 C -0.06 -1.40 10.00 71.23 0.71 -0.69 16 7 C -0.07 -2.44 7.21 42.24 0.30 -2.13 16 8 C 0.61 22.87 7.12 86.77 0.62 23.49 16 9 O -0.55 -20.45 11.52 -3.92 -0.05 -20.50 16 10 N -0.67 -26.95 3.94 -425.45 -1.68 -28.63 16 11 C 0.16 6.15 0.45 3.68 0.00 6.15 16 12 C 0.08 2.66 5.68 71.98 0.41 3.07 16 13 O -0.58 -20.97 13.09 -148.98 -1.95 -22.92 16 14 C -0.12 -4.09 4.42 30.62 0.14 -3.95 16 15 C -0.12 -4.21 5.93 30.67 0.18 -4.03 16 16 C 0.14 5.91 6.52 86.37 0.56 6.48 16 17 N -0.60 -29.90 2.91 -699.09 -2.03 -31.93 16 18 C -0.26 -14.19 9.54 84.03 0.80 -13.39 16 19 H 0.06 3.14 7.83 -2.91 -0.02 3.11 16 20 C -0.04 -1.94 5.28 84.86 0.45 -1.49 16 21 N -0.93 -53.70 10.76 21.65 0.23 -53.47 16 22 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 C 0.19 9.06 3.79 86.36 0.33 9.39 16 27 N -0.26 -8.99 11.85 -48.17 -0.57 -9.56 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.18 6.77 -2.39 -0.02 2.17 16 36 H 0.40 18.06 8.26 -92.71 -0.77 17.30 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.16 6.43 -2.39 -0.02 2.15 16 39 H 0.39 9.80 9.12 -74.05 -0.68 9.13 16 40 H 0.08 2.75 6.14 -2.39 -0.01 2.74 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.04 1.57 7.42 -2.39 -0.02 1.55 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 48 H 0.07 4.19 5.92 -2.39 -0.01 4.17 16 Total: -1.00 -69.79 383.54 0.43 -69.36 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.44 Total: 39.15 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.19 Total: 25.62 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -5.35 Total: -137.17 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.00 Total: -43.42 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.79 0.43 -69.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325873648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.050 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds