Wall clock time and date at job start Tue Mar 31 2020 20:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 N 1.28597 * 124.61755 * 90.02724 * 3 2 1 5 5 C 1.31384 * 108.71793 * 179.97438 * 4 3 2 6 6 C 1.50698 * 127.04846 * 180.02562 * 5 4 3 7 7 C 1.39673 * 105.89841 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.04881 * 180.02562 * 7 5 4 9 9 N 1.46505 * 109.47040 * 89.99928 * 8 7 5 10 10 C 1.34780 * 119.99647 * 179.97438 * 9 8 7 11 11 O 1.21347 * 120.00424 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99423 * 180.02562 * 10 9 8 13 13 O 1.21344 * 120.00353 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99873 * 180.02562 * 12 10 9 15 15 C 1.46496 * 120.00224 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47154 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46862 * 299.99773 * 16 15 14 18 18 C 1.52999 * 109.46956 * 59.99923 * 16 15 14 19 19 C 1.50702 * 109.46914 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99968 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99882 * 180.02562 * 19 16 15 22 22 N 1.31516 * 120.00069 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 120.00217 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46652 * 59.99425 * 23 21 19 25 25 H 1.48497 * 109.47238 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46667 * 299.99735 * 23 21 19 27 27 N 1.28596 * 124.61789 * 269.98345 * 3 2 1 28 28 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46874 * 300.00440 * 1 2 3 30 30 H 1.08997 * 109.47103 * 59.99883 * 1 2 3 31 31 H 1.08995 * 109.47724 * 239.99764 * 2 1 3 32 32 H 1.09004 * 109.47026 * 119.99731 * 2 1 3 33 33 H 1.09005 * 109.47103 * 89.97683 * 6 5 4 34 34 H 1.08998 * 109.46868 * 209.97047 * 6 5 4 35 35 H 1.08997 * 109.47630 * 329.97438 * 6 5 4 36 36 H 1.09001 * 109.47122 * 209.99917 * 8 7 5 37 37 H 1.09001 * 109.47475 * 329.99816 * 8 7 5 38 38 H 0.96992 * 119.99979 * 0.02562 * 9 8 7 39 39 H 0.97002 * 119.99700 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.47093 * 299.99693 * 15 14 12 41 41 H 1.09001 * 109.47012 * 59.99291 * 15 14 12 42 42 H 1.08998 * 109.46924 * 60.00585 * 17 16 15 43 43 H 1.08998 * 109.46947 * 179.97438 * 17 16 15 44 44 H 1.08995 * 109.47248 * 299.99917 * 17 16 15 45 45 H 1.08993 * 109.47006 * 60.00271 * 18 16 15 46 46 H 1.09002 * 109.46276 * 179.97438 * 18 16 15 47 47 H 1.08997 * 109.47330 * 299.99492 * 18 16 15 48 48 H 0.96996 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6839 3.2610 0.6984 6 6 3.0860 4.3945 1.6064 7 6 2.6842 3.2609 -0.6984 8 6 3.0861 4.3945 -1.6063 9 7 4.5183 4.3005 -1.9002 10 6 5.1037 5.2147 -2.6990 11 8 4.4446 6.1160 -3.1743 12 6 6.5646 5.1185 -2.9993 13 8 7.2237 4.2175 -2.5236 14 7 7.1501 6.0330 -3.7976 15 6 8.5822 5.9390 -4.0915 16 6 8.9901 7.0896 -5.0139 17 6 8.1951 7.0038 -6.3183 18 6 8.6974 8.4239 -4.3248 19 6 10.4632 6.9925 -5.3167 20 1 11.0498 6.1907 -4.8933 21 6 11.0622 7.9279 -6.1335 22 7 10.3479 8.9047 -6.6487 23 14 12.8883 7.8081 -6.5083 24 1 13.1722 6.5131 -7.1775 25 1 13.2842 8.9247 -7.4036 26 1 13.6599 7.8908 -5.2422 27 7 2.2622 2.0699 -1.0583 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1516 4.3245 1.8250 34 1 2.8776 5.3450 1.1151 35 1 2.5197 4.3341 2.5358 36 1 2.5197 4.3339 -2.5357 37 1 2.8776 5.3449 -1.1151 38 1 5.0450 3.5799 -1.5206 39 1 6.6232 6.7534 -4.1775 40 1 9.1486 5.9996 -3.1622 41 1 8.7907 4.9885 -4.5827 42 1 7.1296 7.0738 -6.0996 43 1 8.4853 7.8238 -6.9752 44 1 8.4037 6.0533 -6.8091 45 1 9.2637 8.4849 -3.3956 46 1 8.9884 9.2435 -4.9819 47 1 7.6318 8.4939 -4.1062 48 1 10.7692 9.5625 -7.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326253249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:31 Heat of formation + Delta-G solvation = 27.763191 kcal Electronic energy + Delta-G solvation = -28696.088891 eV Core-core repulsion = 24595.820332 eV Total energy + Delta-G solvation = -4100.268559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.98061 -40.36560 -38.38374 -36.48464 -36.13611 -34.81276 -33.33734 -33.13335 -31.81694 -30.87613 -28.70821 -27.73756 -26.06269 -25.70651 -25.21812 -23.87500 -22.93306 -21.60797 -21.28699 -20.21537 -19.01623 -18.36277 -17.64793 -16.99283 -16.52158 -15.90294 -15.81270 -15.45738 -15.08658 -14.88008 -14.61340 -14.47784 -14.23232 -13.78203 -13.69899 -13.52668 -13.38957 -12.98263 -12.91854 -12.88952 -12.66927 -12.53531 -12.20684 -11.96244 -11.49125 -11.45390 -11.38123 -11.16620 -11.14318 -10.85227 -10.73215 -10.54808 -10.38258 -10.19159 -9.63684 -9.62978 -9.43464 -9.36530 -9.16482 -8.79656 -8.58615 -8.35617 -6.01313 -4.12110 1.36774 1.66421 1.79200 1.87419 2.76782 3.30559 3.35220 3.38343 3.48307 3.58192 3.99970 4.18927 4.27642 4.37149 4.40159 4.52330 4.59418 4.82322 4.89970 4.97556 5.07063 5.23280 5.25152 5.33084 5.43454 5.43654 5.50937 5.78697 5.89785 6.06509 6.12864 6.25038 6.31765 6.48582 6.64672 6.84009 6.86841 6.95549 7.01995 7.09321 7.34755 7.56646 7.67176 7.71647 7.95497 7.97289 8.01651 8.13926 8.33878 8.42730 8.87781 9.53609 11.00002 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.001866 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.118134 B =15002.908201 C =15152.102248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 N -0.151 5.151 4 N -0.290 5.290 5 C 0.021 3.979 6 C -0.068 4.068 7 C -0.022 4.022 8 C 0.213 3.787 9 N -0.701 5.701 10 C 0.511 3.489 11 O -0.518 6.518 12 C 0.497 3.503 13 O -0.535 6.535 14 N -0.680 5.680 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 N -0.264 5.264 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.009 0.991 43 H 0.087 0.913 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.087 0.913 47 H 0.009 0.991 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 -13.079 14.261 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.052 5.052 4 N -0.131 5.131 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.184 4.184 8 C 0.088 3.912 9 N -0.356 5.356 10 C 0.292 3.708 11 O -0.393 6.393 12 C 0.276 3.724 13 O -0.413 6.413 14 N -0.331 5.331 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.546 4.546 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 N -0.107 5.107 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.250 0.750 39 H 0.249 0.751 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.105 0.895 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.105 0.895 47 H 0.028 0.972 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.093 -14.219 14.110 28.372 hybrid contribution 1.196 0.575 -0.221 1.345 sum -18.897 -13.644 13.889 27.132 Atomic orbital electron populations 1.22184 0.93020 1.03985 1.03706 1.22030 0.96086 0.74241 1.05990 1.48065 1.44661 1.13302 0.99194 1.74036 1.18231 1.05103 1.15756 1.23151 1.03154 0.94374 0.93540 1.20144 1.02321 0.92790 0.97472 1.22850 1.07420 0.94424 0.93731 1.19381 0.81038 0.93322 0.97479 1.45719 1.09597 1.30589 1.49732 1.20459 0.89006 0.82124 0.79206 1.90764 1.65086 1.33206 1.50266 1.19905 0.87418 0.83731 0.81341 1.90729 1.64759 1.33978 1.51865 1.46215 1.12474 1.28205 1.46239 1.21945 0.76296 1.01259 0.99878 1.18388 0.95726 0.89649 0.90776 1.21853 0.94945 1.01924 1.00382 1.21849 0.95707 1.01786 0.99742 1.20904 0.92362 1.11673 1.29643 0.92426 1.24881 0.97982 0.95123 0.95509 1.69797 1.35329 1.14384 1.32724 0.86619 0.85337 0.77562 0.78236 1.20306 1.21329 1.20292 1.74018 1.15926 1.04791 1.15974 0.89475 0.91424 0.91332 0.87204 0.87257 0.89964 0.89892 0.90442 0.89195 0.88617 0.75050 0.75149 0.91981 0.92022 0.97235 0.89453 0.95363 0.95353 0.89454 0.97220 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 2 C 0.14 0.73 7.26 -4.04 -0.03 0.70 16 3 N -0.15 -1.46 3.95 -10.62 -0.04 -1.50 16 4 N -0.29 -3.06 12.05 33.71 0.41 -2.65 16 5 C 0.02 0.21 7.35 -82.25 -0.60 -0.40 16 6 C -0.07 -0.48 10.34 36.00 0.37 -0.11 16 7 C -0.02 -0.23 6.72 -82.25 -0.55 -0.78 16 8 C 0.21 2.18 6.12 -5.19 -0.03 2.15 16 9 N -0.70 -8.53 5.54 -61.90 -0.34 -8.87 16 10 C 0.51 7.72 7.89 -11.58 -0.09 7.63 16 11 O -0.52 -8.66 16.48 5.50 0.09 -8.57 16 12 C 0.50 8.70 7.89 -11.58 -0.09 8.61 16 13 O -0.54 -10.33 16.48 5.50 0.09 -10.23 16 14 N -0.68 -12.57 4.95 -60.73 -0.30 -12.87 16 15 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 16 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 19 C -0.51 -13.13 8.01 -34.44 -0.28 -13.40 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.88 -23.52 9.35 55.43 0.52 -23.00 16 23 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 N -0.26 -2.94 12.05 33.71 0.41 -2.53 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.48 7.50 -51.93 -0.39 0.09 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.85 7.50 -51.93 -0.39 0.46 16 38 H 0.41 4.97 7.94 -40.82 -0.32 4.64 16 39 H 0.41 7.45 5.64 -40.82 -0.23 7.22 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 47 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 48 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -30.91 398.04 -6.00 -36.91 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.29 Total: 7.64 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.51 Total: 4.10 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.65 Total: -51.42 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.91 -6.00 -36.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326253249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.669 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds