Wall clock time and date at job start Tue Mar 31 2020 20:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 N 1.28597 * 124.61755 * 90.02724 * 3 2 1 5 5 C 1.31384 * 108.71793 * 179.97438 * 4 3 2 6 6 C 1.50698 * 127.04846 * 180.02562 * 5 4 3 7 7 C 1.39673 * 105.89841 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.04881 * 180.02562 * 7 5 4 9 9 N 1.46505 * 109.47040 * 89.99928 * 8 7 5 10 10 C 1.34780 * 119.99647 * 179.97438 * 9 8 7 11 11 O 1.21347 * 120.00424 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99423 * 180.02562 * 10 9 8 13 13 O 1.21344 * 120.00353 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99873 * 180.02562 * 12 10 9 15 15 C 1.46496 * 120.00224 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47154 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46862 * 299.99773 * 16 15 14 18 18 C 1.52999 * 109.46956 * 59.99923 * 16 15 14 19 19 C 1.50702 * 109.46914 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99968 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99882 * 180.02562 * 19 16 15 22 22 N 1.31516 * 120.00069 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 120.00217 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46652 * 59.99425 * 23 21 19 25 25 H 1.48497 * 109.47238 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46667 * 299.99735 * 23 21 19 27 27 N 1.28596 * 124.61789 * 269.98345 * 3 2 1 28 28 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46874 * 300.00440 * 1 2 3 30 30 H 1.08997 * 109.47103 * 59.99883 * 1 2 3 31 31 H 1.08995 * 109.47724 * 239.99764 * 2 1 3 32 32 H 1.09004 * 109.47026 * 119.99731 * 2 1 3 33 33 H 1.09005 * 109.47103 * 89.97683 * 6 5 4 34 34 H 1.08998 * 109.46868 * 209.97047 * 6 5 4 35 35 H 1.08997 * 109.47630 * 329.97438 * 6 5 4 36 36 H 1.09001 * 109.47122 * 209.99917 * 8 7 5 37 37 H 1.09001 * 109.47475 * 329.99816 * 8 7 5 38 38 H 0.96992 * 119.99979 * 0.02562 * 9 8 7 39 39 H 0.97002 * 119.99700 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.47093 * 299.99693 * 15 14 12 41 41 H 1.09001 * 109.47012 * 59.99291 * 15 14 12 42 42 H 1.08998 * 109.46924 * 60.00585 * 17 16 15 43 43 H 1.08998 * 109.46947 * 179.97438 * 17 16 15 44 44 H 1.08995 * 109.47248 * 299.99917 * 17 16 15 45 45 H 1.08993 * 109.47006 * 60.00271 * 18 16 15 46 46 H 1.09002 * 109.46276 * 179.97438 * 18 16 15 47 47 H 1.08997 * 109.47330 * 299.99492 * 18 16 15 48 48 H 0.96996 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6839 3.2610 0.6984 6 6 3.0860 4.3945 1.6064 7 6 2.6842 3.2609 -0.6984 8 6 3.0861 4.3945 -1.6063 9 7 4.5183 4.3005 -1.9002 10 6 5.1037 5.2147 -2.6990 11 8 4.4446 6.1160 -3.1743 12 6 6.5646 5.1185 -2.9993 13 8 7.2237 4.2175 -2.5236 14 7 7.1501 6.0330 -3.7976 15 6 8.5822 5.9390 -4.0915 16 6 8.9901 7.0896 -5.0139 17 6 8.1951 7.0038 -6.3183 18 6 8.6974 8.4239 -4.3248 19 6 10.4632 6.9925 -5.3167 20 1 11.0498 6.1907 -4.8933 21 6 11.0622 7.9279 -6.1335 22 7 10.3479 8.9047 -6.6487 23 14 12.8883 7.8081 -6.5083 24 1 13.1722 6.5131 -7.1775 25 1 13.2842 8.9247 -7.4036 26 1 13.6599 7.8908 -5.2422 27 7 2.2622 2.0699 -1.0583 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1516 4.3245 1.8250 34 1 2.8776 5.3450 1.1151 35 1 2.5197 4.3341 2.5358 36 1 2.5197 4.3339 -2.5357 37 1 2.8776 5.3449 -1.1151 38 1 5.0450 3.5799 -1.5206 39 1 6.6232 6.7534 -4.1775 40 1 9.1486 5.9996 -3.1622 41 1 8.7907 4.9885 -4.5827 42 1 7.1296 7.0738 -6.0996 43 1 8.4853 7.8238 -6.9752 44 1 8.4037 6.0533 -6.8091 45 1 9.2637 8.4849 -3.3956 46 1 8.9884 9.2435 -4.9819 47 1 7.6318 8.4939 -4.1062 48 1 10.7692 9.5625 -7.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326253249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:30 Heat of formation + Delta-G solvation = 5.978295 kcal Electronic energy + Delta-G solvation = -28697.033555 eV Core-core repulsion = 24595.820332 eV Total energy + Delta-G solvation = -4101.213223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.70553 -41.68352 -39.75762 -38.17487 -36.98052 -35.67047 -34.92906 -33.89025 -32.72795 -32.47722 -29.49160 -28.52138 -27.60463 -27.55853 -27.07270 -24.78572 -23.92272 -22.37922 -22.00741 -21.51383 -20.69374 -19.78304 -18.34264 -18.06437 -17.71730 -17.44485 -17.08046 -16.79360 -16.45837 -16.15224 -15.76295 -15.50022 -15.08687 -14.86922 -14.74542 -14.64228 -14.35463 -14.25168 -14.12065 -14.01825 -13.43394 -13.41607 -13.18450 -13.10380 -13.04461 -12.79253 -12.66599 -12.60594 -12.34228 -12.24870 -12.17262 -12.10520 -11.90280 -11.48083 -11.35237 -11.27091 -10.77627 -10.65986 -10.40416 -10.37791 -10.10281 -10.09735 -7.99340 -6.15655 0.35931 0.58506 0.99351 1.30322 1.47134 1.48109 1.54219 1.62226 2.16110 2.47336 2.77150 2.91026 3.24344 3.47460 3.51231 3.85809 3.90726 3.94005 4.16653 4.27876 4.36905 4.47462 4.49578 4.67434 4.68709 4.70629 4.76602 4.79087 4.91886 4.94943 5.01985 5.06979 5.07996 5.08666 5.14161 5.20109 5.24237 5.30970 5.50665 5.67548 5.67989 5.69589 5.91529 6.14159 6.21436 6.37127 6.43526 6.71190 6.87960 6.97763 7.21842 7.52003 8.99587 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.001866 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.118134 B =15002.908201 C =15152.102248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 N -0.149 5.149 4 N -0.306 5.306 5 C 0.016 3.984 6 C -0.069 4.069 7 C -0.033 4.033 8 C 0.216 3.784 9 N -0.685 5.685 10 C 0.521 3.479 11 O -0.534 6.534 12 C 0.499 3.501 13 O -0.553 6.553 14 N -0.680 5.680 15 C 0.143 3.857 16 C 0.049 3.951 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.026 3.974 22 N -0.900 5.900 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 N -0.283 5.283 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.415 0.585 39 H 0.414 0.586 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.593 -13.851 15.219 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.051 5.051 4 N -0.148 5.148 5 C -0.147 4.147 6 C -0.127 4.127 7 C -0.194 4.194 8 C 0.091 3.909 9 N -0.338 5.338 10 C 0.301 3.699 11 O -0.410 6.410 12 C 0.279 3.721 13 O -0.432 6.432 14 N -0.332 5.332 15 C 0.020 3.980 16 C 0.048 3.952 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.564 4.564 20 H 0.069 0.931 21 C -0.174 4.174 22 N -0.538 5.538 23 Si 0.774 3.226 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.127 5.127 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.252 0.748 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.062 -15.012 15.090 29.945 hybrid contribution 1.423 0.710 -0.468 1.657 sum -19.639 -14.303 14.622 28.356 Atomic orbital electron populations 1.22140 0.92088 1.05374 1.02462 1.22469 0.96867 0.72731 1.07446 1.48533 1.43858 1.14142 0.98607 1.74030 1.18871 1.05613 1.16301 1.23589 1.02588 0.94812 0.93701 1.20268 1.02593 0.92367 0.97517 1.22861 1.08102 0.94416 0.94071 1.19503 0.79371 0.94262 0.97714 1.45678 1.10487 1.29471 1.48194 1.19868 0.87607 0.82605 0.79808 1.90768 1.64900 1.34052 1.51306 1.20294 0.88539 0.82846 0.80385 1.90721 1.65593 1.34559 1.52342 1.46054 1.11486 1.28803 1.46842 1.21547 0.77746 0.99798 0.98876 1.18400 0.94635 0.90698 0.91460 1.21702 0.96210 1.00550 0.99667 1.21693 0.97028 1.00562 0.98790 1.21202 0.93943 1.11517 1.29757 0.93103 1.25489 1.01234 0.95045 0.95597 1.69916 1.36356 1.14655 1.32913 0.85785 0.81486 0.77388 0.77937 1.20214 1.21128 1.20118 1.73974 1.16467 1.05349 1.16903 0.86764 0.92408 0.92684 0.86009 0.85583 0.89602 0.88582 0.89585 0.89276 0.86755 0.74805 0.74772 0.92641 0.92868 0.95042 0.91806 0.95886 0.95743 0.91840 0.94970 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.24 71.98 0.74 -0.40 16 2 C 0.12 1.14 7.26 86.38 0.63 1.76 16 3 N -0.15 -2.71 3.95 -187.50 -0.74 -3.45 16 4 N -0.31 -6.11 12.05 -47.25 -0.57 -6.68 16 5 C 0.02 0.29 7.35 42.97 0.32 0.61 16 6 C -0.07 -0.84 10.34 71.24 0.74 -0.10 16 7 C -0.03 -0.65 6.72 42.97 0.29 -0.36 16 8 C 0.22 4.04 6.12 85.63 0.52 4.57 16 9 N -0.68 -15.52 5.54 -468.13 -2.59 -18.11 16 10 C 0.52 14.89 7.89 87.27 0.69 15.58 16 11 O -0.53 -16.85 16.48 -3.24 -0.05 -16.90 16 12 C 0.50 16.86 7.89 87.27 0.69 17.55 16 13 O -0.55 -20.79 16.48 -3.23 -0.05 -20.85 16 14 N -0.68 -24.37 4.95 -464.41 -2.30 -26.67 16 15 C 0.14 5.91 4.50 86.38 0.39 6.30 16 16 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 17 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 18 C -0.12 -5.53 8.08 71.98 0.58 -4.94 16 19 C -0.53 -27.26 8.01 25.60 0.21 -27.05 16 20 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 21 C 0.03 1.37 5.15 84.65 0.44 1.80 16 22 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 23 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 N -0.28 -6.02 12.05 -47.25 -0.57 -6.59 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 0.90 7.50 -2.39 -0.02 0.88 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.75 7.50 -2.39 -0.02 1.74 16 38 H 0.42 9.37 7.94 -92.71 -0.74 8.63 16 39 H 0.41 14.37 5.64 -92.71 -0.52 13.85 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 43 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 44 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 47 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 48 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -64.95 398.04 1.86 -63.09 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.26 Total: 27.30 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.77 Total: 12.52 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -6.57 Total: -109.39 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.11 Total: -37.75 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -64.95 1.86 -63.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326253249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds