Wall clock time and date at job start Tue Mar 31 2020 19:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.53004 * 109.47390 * 119.99640 * 2 1 3 5 5 C 1.53000 * 109.47332 * 184.99806 * 4 2 1 6 6 N 1.46502 * 109.47126 * 180.02562 * 5 4 2 7 7 C 1.34771 * 119.99885 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00323 * 0.02562 * 7 6 5 9 9 C 1.47527 * 119.99636 * 179.97438 * 7 6 5 10 10 C 1.36597 * 125.76571 * 179.97438 * 9 7 6 11 11 N 1.34820 * 106.83727 * 179.76095 * 10 9 7 12 12 C 1.46494 * 126.59526 * 180.20554 * 11 10 9 13 13 C 1.53177 * 109.54311 * 34.82773 * 12 11 10 14 14 C 1.53106 * 109.16042 * 183.24036 * 13 12 11 15 15 O 1.42905 * 109.48735 * 57.47250 * 14 13 12 16 16 C 1.42908 * 114.09817 * 298.89327 * 15 14 13 17 17 C 1.53094 * 109.41385 * 61.15253 * 16 15 14 18 18 N 1.40214 * 106.80969 * 0.24835 * 11 10 9 19 19 N 1.28759 * 108.36448 * 359.97438 * 18 11 10 20 20 N 1.46506 * 109.47061 * 239.99751 * 2 1 3 21 21 C 1.36933 * 119.99953 * 85.00023 * 20 2 1 22 22 H 1.08004 * 119.99805 * 359.97438 * 21 20 2 23 23 C 1.38814 * 119.99860 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99878 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47319 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47147 * 119.99951 * 25 23 21 28 28 H 1.48498 * 109.47723 * 240.00443 * 25 23 21 29 29 H 1.09006 * 109.47293 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47291 * 300.00024 * 1 2 3 31 31 H 1.08998 * 109.47443 * 60.00324 * 1 2 3 32 32 H 1.09004 * 109.46795 * 64.99852 * 4 2 1 33 33 H 1.08995 * 109.46927 * 305.00363 * 4 2 1 34 34 H 1.08999 * 109.46805 * 60.00557 * 5 4 2 35 35 H 1.08999 * 109.46704 * 299.99972 * 5 4 2 36 36 H 0.97003 * 119.99936 * 359.97438 * 6 5 4 37 37 H 1.08002 * 126.58530 * 0.03364 * 10 9 7 38 38 H 1.09003 * 109.54400 * 155.00408 * 12 11 10 39 39 H 1.09000 * 109.52403 * 303.06080 * 13 12 11 40 40 H 1.09003 * 109.52234 * 63.24473 * 13 12 11 41 41 H 1.09005 * 109.40485 * 297.49398 * 14 13 12 42 42 H 1.09001 * 109.48570 * 177.50368 * 14 13 12 43 43 H 1.09003 * 109.47718 * 301.17490 * 16 15 14 44 44 H 1.08997 * 109.48042 * 181.13564 * 16 15 14 45 45 H 1.08997 * 109.51979 * 182.48245 * 17 16 15 46 46 H 1.09003 * 109.57358 * 62.33096 * 17 16 15 47 47 H 0.97005 * 119.99694 * 264.99648 * 20 2 1 48 48 H 0.96997 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3043 2.5096 7 6 5.3741 -1.3397 2.7752 8 8 6.1604 -0.7978 2.0225 9 6 5.8658 -2.0352 3.9798 10 6 7.1729 -2.1440 4.3611 11 7 7.1868 -2.8461 5.5120 12 6 8.3676 -3.2099 6.2989 13 6 9.4051 -2.0861 6.2155 14 6 10.6664 -2.5093 6.9732 15 8 11.1656 -3.7303 6.4236 16 6 10.2554 -4.8279 6.5183 17 6 8.9785 -4.4987 5.7405 18 7 5.8537 -3.1621 5.8103 19 7 5.1038 -2.6714 4.8857 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0076 -2.3758 22 1 1.8918 1.0402 -2.4244 23 6 2.6123 -0.6619 -3.5090 24 7 2.9253 -1.9390 -3.4499 25 14 2.7900 0.2697 -5.1183 26 1 2.3751 1.6819 -4.9212 27 1 4.2069 0.2277 -5.5606 28 1 1.9298 -0.3596 -6.1523 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 1.2057 33 1 1.6054 -0.2617 2.1369 34 1 3.8532 0.4370 1.3574 35 1 3.9994 -1.0728 0.4260 36 1 3.4259 -1.7357 3.1107 37 1 8.0304 -1.7408 3.8429 38 1 8.0796 -3.3637 7.3389 39 1 9.6549 -1.8977 5.1713 40 1 8.9969 -1.1796 6.6625 41 1 10.4243 -2.6566 8.0258 42 1 11.4247 -1.7318 6.8799 43 1 10.0079 -5.0056 7.5649 44 1 10.7176 -5.7208 6.0972 45 1 8.2656 -5.3162 5.8480 46 1 9.2185 -4.3611 4.6861 47 1 2.2490 -1.6319 -1.1525 48 1 3.2486 -2.3963 -4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328437731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:54 Heat of formation + Delta-G solvation = -10.524060 kcal Electronic energy + Delta-G solvation = -28450.710653 eV Core-core repulsion = 24348.781834 eV Total energy + Delta-G solvation = -4101.928819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40983 -40.64227 -40.23395 -38.12276 -36.53059 -35.84738 -34.13479 -32.72173 -32.32920 -32.10765 -30.91275 -29.53819 -26.71992 -25.91460 -25.22515 -24.66717 -23.50564 -23.38811 -21.84287 -21.22979 -21.15632 -19.48671 -19.11233 -17.69239 -17.37012 -17.15512 -17.00395 -16.78063 -16.56191 -16.21194 -15.90761 -15.79466 -15.56104 -15.33355 -15.09924 -14.93126 -14.87472 -14.40422 -14.11084 -13.55860 -13.50827 -13.44316 -13.22748 -12.84312 -12.78998 -12.66024 -12.61552 -12.46640 -12.29025 -12.25918 -12.20352 -12.07875 -11.67498 -11.58453 -11.51025 -11.29012 -11.23214 -10.93103 -10.75075 -10.50238 -10.06895 -8.95687 -7.90312 -5.17108 0.03095 0.53784 0.89874 1.47333 1.48534 1.57852 2.07351 2.17962 2.58923 2.87614 3.06586 3.11898 3.41949 3.43866 3.60382 3.73515 3.78711 3.84080 3.93133 4.00818 4.06005 4.14028 4.20113 4.24481 4.38340 4.44390 4.51641 4.57837 4.65844 4.69304 4.76190 4.78260 4.87744 4.90654 4.94744 5.03477 5.03783 5.11964 5.22612 5.34337 5.39781 5.41593 5.56835 5.63358 6.17333 6.32602 6.39394 6.82370 7.10770 7.38407 8.16275 8.37880 9.33547 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.001946 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.917487 B =14383.459931 C =15344.626537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.702 5.702 7 C 0.597 3.403 8 O -0.574 6.574 9 C -0.117 4.117 10 C 0.108 3.892 11 N -0.342 5.342 12 C 0.144 3.856 13 C -0.168 4.168 14 C 0.066 3.934 15 O -0.399 6.399 16 C 0.068 3.932 17 C -0.165 4.165 18 N -0.079 5.079 19 N -0.218 5.218 20 N -0.735 5.735 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.265 1.265 27 H -0.298 1.298 28 H -0.295 1.295 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.416 0.584 37 H 0.223 0.777 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.223 -3.131 29.315 32.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.352 5.352 7 C 0.382 3.618 8 O -0.453 6.453 9 C -0.256 4.256 10 C -0.050 4.050 11 N -0.126 5.126 12 C 0.044 3.956 13 C -0.206 4.206 14 C -0.011 4.011 15 O -0.318 6.318 16 C -0.010 4.010 17 C -0.204 4.204 18 N -0.058 5.058 19 N -0.092 5.092 20 N -0.376 5.376 21 C -0.361 4.361 22 H 0.094 0.906 23 C -0.273 4.273 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.190 1.190 27 H -0.225 1.225 28 H -0.222 1.222 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.253 0.747 37 H 0.240 0.760 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.995 -3.301 29.608 32.915 hybrid contribution 0.192 0.141 -1.776 1.792 sum 14.187 -3.160 27.832 31.398 Atomic orbital electron populations 1.22262 0.97160 1.00994 1.00903 1.20450 0.93131 0.95298 0.85466 0.93530 1.21931 0.92552 1.02050 0.99084 1.21210 0.95392 0.96427 0.85946 1.45760 1.06902 1.55732 1.26827 1.17075 0.82771 0.78907 0.83068 1.90815 1.56438 1.48067 1.50006 1.21319 0.91820 1.11765 1.00722 1.23581 0.99716 0.93688 0.88033 1.50886 1.08730 1.36019 1.16998 1.22064 0.80309 0.96826 0.96414 1.22740 0.95665 0.97826 1.04418 1.22713 0.94727 0.86889 0.96782 1.87997 1.42161 1.19407 1.82245 1.22674 0.87942 0.90020 1.00326 1.22691 0.99373 0.96511 1.01863 1.81893 0.84123 1.21364 1.18467 1.74587 1.27384 1.06956 1.00265 1.42672 1.78325 1.10242 1.06315 1.19653 1.34012 0.94129 0.88356 0.90633 1.25507 1.03479 0.96897 1.01391 1.69822 1.53106 1.10198 1.29108 0.85148 0.76563 0.78319 0.80248 1.18955 1.22545 1.22249 0.93780 0.90655 0.94679 0.91266 0.87848 0.92111 0.93893 0.74730 0.76013 0.85047 0.89752 0.88280 0.90631 0.86495 0.90525 0.87019 0.89425 0.90894 0.79692 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.49 71.98 0.68 -4.47 16 2 C 0.17 6.27 2.89 44.99 0.13 6.40 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 C -0.12 -3.58 4.87 30.60 0.15 -3.43 16 5 C 0.13 4.64 5.56 86.38 0.48 5.12 16 6 N -0.70 -21.17 5.55 -466.28 -2.59 -23.76 16 7 C 0.60 19.42 7.82 86.69 0.68 20.10 16 8 O -0.57 -22.68 16.86 -4.01 -0.07 -22.74 16 9 C -0.12 -3.09 6.99 40.82 0.29 -2.81 16 10 C 0.11 2.13 10.40 83.85 0.87 3.00 16 11 N -0.34 -5.72 3.55 -325.98 -1.16 -6.88 16 12 C 0.14 1.28 3.32 45.11 0.15 1.43 16 13 C -0.17 -1.00 5.15 30.69 0.16 -0.84 16 14 C 0.07 0.30 6.84 72.02 0.49 0.79 16 15 O -0.40 -3.84 10.77 -148.98 -1.60 -5.44 16 16 C 0.07 0.40 6.84 72.01 0.49 0.89 16 17 C -0.17 -1.40 5.75 30.68 0.18 -1.23 16 18 N -0.08 -1.81 13.78 37.02 0.51 -1.30 16 19 N -0.22 -5.74 12.04 -49.99 -0.60 -6.34 16 20 N -0.73 -36.86 4.57 -322.93 -1.48 -38.34 16 21 C -0.23 -12.86 9.93 84.03 0.83 -12.03 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 24 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 25 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.88 7.75 -2.39 -0.02 1.87 16 36 H 0.42 10.54 8.16 -92.71 -0.76 9.78 16 37 H 0.22 3.33 7.27 -2.91 -0.02 3.31 16 38 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.61 7.08 -2.39 -0.02 0.60 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 0.10 8.14 -2.38 -0.02 0.08 16 42 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.37 20.24 7.80 -92.70 -0.72 19.52 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.16 398.66 0.87 -76.29 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.50 Total: 31.05 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.05 Total: 8.63 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -5.03 Total: -137.43 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.67 Total: -28.18 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.16 0.87 -76.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328437731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.766 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds