Wall clock time and date at job start Tue Mar 31 2020 19:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46904 * 109.46997 * 119.99909 * 2 1 3 5 5 C 1.46902 * 110.99806 * 274.99644 * 4 2 1 6 6 C 1.50704 * 109.46664 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00440 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99440 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99243 * 180.02562 * 8 6 5 10 10 H 1.07991 * 120.00705 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99342 * 179.97438 * 9 8 6 12 12 N 1.31415 * 120.00252 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 120.00306 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47213 * 89.99753 * 13 11 9 15 15 H 1.48498 * 109.47200 * 210.00000 * 13 11 9 16 16 H 1.48499 * 109.46448 * 329.99717 * 13 11 9 17 17 C 1.52999 * 109.47314 * 239.99861 * 2 1 3 18 18 H 1.09004 * 109.47434 * 175.00093 * 17 2 1 19 19 C 1.52997 * 109.47114 * 294.99899 * 17 2 1 20 20 N 1.46498 * 109.46963 * 54.99692 * 17 2 1 21 21 C 1.34777 * 119.99828 * 154.72290 * 20 17 2 22 22 O 1.21283 * 120.00222 * 0.28168 * 21 20 17 23 23 C 1.50703 * 120.00290 * 180.27728 * 21 20 17 24 24 C 1.50701 * 109.47355 * 180.02562 * 23 21 20 25 25 C 1.39861 * 126.04057 * 269.69361 * 24 23 21 26 26 N 1.30840 * 108.20536 * 179.81904 * 25 24 23 27 27 N 1.40084 * 108.19905 * 0.43602 * 26 25 24 28 28 C 1.46504 * 126.03595 * 179.69588 * 27 26 25 29 29 C 1.34950 * 107.92650 * 359.72129 * 27 26 25 30 30 H 1.09004 * 109.47050 * 299.99902 * 1 2 3 31 31 H 1.08998 * 109.47150 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 33 33 H 1.00904 * 110.99711 * 151.04887 * 4 2 1 34 34 H 1.08994 * 109.47493 * 300.00186 * 5 4 2 35 35 H 1.08998 * 109.46780 * 60.00871 * 5 4 2 36 36 H 0.96992 * 119.99837 * 0.02562 * 8 6 5 37 37 H 0.96987 * 120.00382 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.47293 * 179.97438 * 19 17 2 39 39 H 1.09003 * 109.47189 * 300.00067 * 19 17 2 40 40 H 1.09009 * 109.47238 * 59.99946 * 19 17 2 41 41 H 0.97001 * 120.00384 * 335.00737 * 20 17 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 23 21 20 43 43 H 1.09002 * 109.46946 * 59.99717 * 23 21 20 44 44 H 1.08004 * 125.90186 * 359.97438 * 25 24 23 45 45 H 1.08999 * 109.47193 * 270.02544 * 28 27 26 46 46 H 1.08999 * 109.46943 * 30.02620 * 28 27 26 47 47 H 1.08998 * 109.46822 * 150.02687 * 28 27 26 48 48 H 1.08005 * 126.12500 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8696 -1.6982 3.4698 8 7 2.7287 0.1207 4.7324 9 6 3.1896 -0.5562 5.8320 10 1 3.4399 -1.6039 5.7555 11 6 3.3346 0.1060 7.0450 12 7 3.7759 -0.5428 8.0992 13 14 2.9010 1.9182 7.1776 14 1 1.4718 2.0589 7.5552 15 1 3.7519 2.5562 8.2139 16 1 3.1348 2.5800 5.8689 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6444 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0940 -0.1891 -3.6264 22 8 3.1494 -0.7815 -3.7051 23 6 1.4963 0.4515 -4.8525 24 6 2.3989 0.2119 -6.0352 25 6 3.4433 1.0421 -6.4548 26 7 3.9965 0.5016 -7.5102 27 7 3.3139 -0.6865 -7.8018 28 6 3.6070 -1.5991 -8.9097 29 6 2.3384 -0.8415 -6.8823 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.9174 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5036 1.0617 4.8012 37 1 3.8768 -0.0807 8.9459 38 1 1.9983 -2.7092 -2.0780 39 1 2.0700 -2.6550 -0.3001 40 1 0.5489 -2.2724 -1.1420 41 1 0.6118 0.3701 -2.3794 42 1 0.5168 0.0156 -5.0492 43 1 1.3902 1.5237 -4.6872 44 1 3.7433 1.9682 -5.9869 45 1 3.0298 -1.3040 -9.7859 46 1 4.6707 -1.5563 -9.1440 47 1 3.3386 -2.6160 -8.6234 48 1 1.6352 -1.6597 -6.8318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328995457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:16 Heat of formation + Delta-G solvation = 15.622419 kcal Electronic energy + Delta-G solvation = -28233.506745 eV Core-core repulsion = 24132.711722 eV Total energy + Delta-G solvation = -4100.795023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53830 -39.98415 -38.59103 -37.38258 -34.47761 -33.96294 -33.82494 -32.24539 -31.66941 -30.89605 -29.27159 -28.50064 -26.75393 -26.15726 -24.52680 -23.40260 -21.42111 -21.30140 -20.23763 -19.79339 -19.40512 -18.43014 -17.49305 -17.14371 -16.32757 -15.90999 -15.69961 -15.60302 -15.31411 -15.09527 -14.74319 -14.68497 -14.07724 -13.95420 -13.65649 -13.58806 -13.38342 -13.14095 -12.95645 -12.86591 -12.73984 -12.59821 -12.38140 -12.15055 -12.09698 -12.01440 -11.87017 -11.55179 -11.20516 -10.96961 -10.89202 -10.72232 -10.59550 -10.00620 -9.97029 -9.70124 -9.56987 -9.21460 -8.69064 -8.58952 -8.22042 -8.16365 -6.30617 -3.82097 1.59163 2.20991 2.42146 2.53528 3.02406 3.06742 3.11421 3.15284 3.74356 4.09311 4.12874 4.16073 4.48065 4.51514 4.64634 4.72573 4.75126 4.77465 4.87404 4.93453 4.99087 5.01577 5.11794 5.22025 5.27322 5.40293 5.46915 5.51399 5.52907 5.65383 5.75631 5.76245 5.80961 5.87042 5.91410 5.95857 6.17296 6.33157 6.37747 6.43147 6.67783 7.05608 7.35720 7.39855 7.52018 7.58646 8.12606 8.14995 8.60133 8.95484 9.42829 9.83003 10.82533 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.001688 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.326821 B =16587.237096 C =16653.350356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.657 5.657 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.563 6.563 8 N -0.591 5.591 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.270 1.270 17 C 0.142 3.858 18 H 0.085 0.915 19 C -0.156 4.156 20 N -0.727 5.727 21 C 0.510 3.490 22 O -0.530 6.530 23 C -0.059 4.059 24 C -0.221 4.221 25 C 0.063 3.937 26 N -0.299 5.299 27 N -0.377 5.377 28 C 0.102 3.898 29 C 0.069 3.931 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 5.320 -31.692 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.065 0.935 4 N -0.291 5.291 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.445 6.445 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.195 1.195 17 C 0.037 3.963 18 H 0.103 0.897 19 C -0.215 4.215 20 N -0.381 5.381 21 C 0.296 3.704 22 O -0.406 6.406 23 C -0.100 4.100 24 C -0.233 4.233 25 C -0.123 4.123 26 N -0.120 5.120 27 N -0.159 5.159 28 C -0.039 4.039 29 C -0.077 4.077 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.861 3.817 -32.429 33.585 hybrid contribution -0.586 2.142 0.859 2.381 sum -8.447 5.960 -31.570 33.220 Atomic orbital electron populations 1.21882 0.94440 1.02971 1.00865 1.21728 0.96527 0.95879 0.89315 0.93519 1.60186 1.35087 1.31584 1.02239 1.21767 1.01343 0.94014 0.91357 1.19691 0.84546 0.88223 0.83966 1.90569 1.53743 1.15862 1.84334 1.42203 1.60162 1.11053 1.09610 1.19436 1.40241 0.97969 0.85735 0.86269 1.25039 0.97477 0.98386 0.95243 1.69618 1.45114 1.36591 1.00809 0.86668 0.79298 0.84960 0.78430 1.19614 1.20204 1.19548 1.21032 0.98654 0.93368 0.83238 0.89679 1.22113 1.01957 0.94755 1.02640 1.46204 1.25975 1.57589 1.08367 1.20776 0.85028 0.80252 0.84389 1.90729 1.22368 1.42125 1.85328 1.19889 0.98210 1.02342 0.89605 1.19380 1.03944 0.98684 1.01309 1.23718 0.94417 1.00081 0.94104 1.77353 1.19567 0.96318 1.18781 1.48394 1.24995 1.18785 1.23682 1.21851 1.03726 0.91374 0.86973 1.22238 0.94341 0.99813 0.91321 0.92188 0.93122 0.91122 0.82654 0.93711 0.89413 0.79715 0.91622 0.92941 0.90128 0.92210 0.76582 0.88443 0.88148 0.80239 0.90788 0.89273 0.89467 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.93 37.16 0.33 -0.96 16 2 C 0.08 0.82 2.66 -67.71 -0.18 0.64 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16 4 N -0.66 -9.59 5.14 -107.99 -0.55 -10.14 16 5 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 6 C 0.45 10.08 7.82 -10.98 -0.09 10.00 16 7 O -0.56 -15.00 15.78 5.55 0.09 -14.91 16 8 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 9 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 10 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 12 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 13 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 17 C 0.14 1.51 2.31 -67.93 -0.16 1.35 16 18 H 0.09 1.10 7.57 -51.93 -0.39 0.70 16 19 C -0.16 -1.78 9.02 37.16 0.34 -1.44 16 20 N -0.73 -5.95 4.99 -53.81 -0.27 -6.22 16 21 C 0.51 4.97 7.79 -10.98 -0.09 4.89 16 22 O -0.53 -7.74 15.69 5.55 0.09 -7.65 16 23 C -0.06 -0.37 6.19 -29.03 -0.18 -0.55 16 24 C -0.22 -1.95 4.59 -105.06 -0.48 -2.44 16 25 C 0.06 0.63 11.96 -17.37 -0.21 0.42 16 26 N -0.30 -3.42 12.58 30.62 0.39 -3.03 16 27 N -0.38 -3.40 4.01 -68.16 -0.27 -3.68 16 28 C 0.10 0.49 11.47 59.85 0.69 1.17 16 29 C 0.07 0.57 11.40 -17.22 -0.20 0.37 16 30 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.05 0.31 6.29 -51.93 -0.33 -0.02 16 32 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 33 H 0.35 5.54 7.61 -39.29 -0.30 5.24 16 34 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 36 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.05 7.17 -51.93 -0.37 0.68 16 40 H 0.06 0.62 6.57 -51.92 -0.34 0.28 16 41 H 0.40 2.15 6.58 -40.82 -0.27 1.88 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.17 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -38.06 396.99 -6.16 -44.22 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.11 Total: 13.43 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.50 Total: 6.44 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.01 Total: -62.10 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.06 -6.16 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -38.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds