Wall clock time and date at job start Tue Mar 31 2020 19:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46904 * 109.46997 * 119.99909 * 2 1 3 5 5 C 1.46902 * 110.99806 * 274.99644 * 4 2 1 6 6 C 1.50704 * 109.46664 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00440 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99440 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99243 * 180.02562 * 8 6 5 10 10 H 1.07991 * 120.00705 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99342 * 179.97438 * 9 8 6 12 12 N 1.31415 * 120.00252 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 120.00306 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47213 * 89.99753 * 13 11 9 15 15 H 1.48498 * 109.47200 * 210.00000 * 13 11 9 16 16 H 1.48499 * 109.46448 * 329.99717 * 13 11 9 17 17 C 1.52999 * 109.47314 * 239.99861 * 2 1 3 18 18 H 1.09004 * 109.47434 * 175.00093 * 17 2 1 19 19 C 1.52997 * 109.47114 * 294.99899 * 17 2 1 20 20 N 1.46498 * 109.46963 * 54.99692 * 17 2 1 21 21 C 1.34777 * 119.99828 * 154.72290 * 20 17 2 22 22 O 1.21283 * 120.00222 * 0.28168 * 21 20 17 23 23 C 1.50703 * 120.00290 * 180.27728 * 21 20 17 24 24 C 1.50701 * 109.47355 * 180.02562 * 23 21 20 25 25 C 1.39861 * 126.04057 * 269.69361 * 24 23 21 26 26 N 1.30840 * 108.20536 * 179.81904 * 25 24 23 27 27 N 1.40084 * 108.19905 * 0.43602 * 26 25 24 28 28 C 1.46504 * 126.03595 * 179.69588 * 27 26 25 29 29 C 1.34950 * 107.92650 * 359.72129 * 27 26 25 30 30 H 1.09004 * 109.47050 * 299.99902 * 1 2 3 31 31 H 1.08998 * 109.47150 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 33 33 H 1.00904 * 110.99711 * 151.04887 * 4 2 1 34 34 H 1.08994 * 109.47493 * 300.00186 * 5 4 2 35 35 H 1.08998 * 109.46780 * 60.00871 * 5 4 2 36 36 H 0.96992 * 119.99837 * 0.02562 * 8 6 5 37 37 H 0.96987 * 120.00382 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.47293 * 179.97438 * 19 17 2 39 39 H 1.09003 * 109.47189 * 300.00067 * 19 17 2 40 40 H 1.09009 * 109.47238 * 59.99946 * 19 17 2 41 41 H 0.97001 * 120.00384 * 335.00737 * 20 17 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 23 21 20 43 43 H 1.09002 * 109.46946 * 59.99717 * 23 21 20 44 44 H 1.08004 * 125.90186 * 359.97438 * 25 24 23 45 45 H 1.08999 * 109.47193 * 270.02544 * 28 27 26 46 46 H 1.08999 * 109.46943 * 30.02620 * 28 27 26 47 47 H 1.08998 * 109.46822 * 150.02687 * 28 27 26 48 48 H 1.08005 * 126.12500 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8696 -1.6982 3.4698 8 7 2.7287 0.1207 4.7324 9 6 3.1896 -0.5562 5.8320 10 1 3.4399 -1.6039 5.7555 11 6 3.3346 0.1060 7.0450 12 7 3.7759 -0.5428 8.0992 13 14 2.9010 1.9182 7.1776 14 1 1.4718 2.0589 7.5552 15 1 3.7519 2.5562 8.2139 16 1 3.1348 2.5800 5.8689 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6444 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0940 -0.1891 -3.6264 22 8 3.1494 -0.7815 -3.7051 23 6 1.4963 0.4515 -4.8525 24 6 2.3989 0.2119 -6.0352 25 6 3.4433 1.0421 -6.4548 26 7 3.9965 0.5016 -7.5102 27 7 3.3139 -0.6865 -7.8018 28 6 3.6070 -1.5991 -8.9097 29 6 2.3384 -0.8415 -6.8823 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.9174 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5036 1.0617 4.8012 37 1 3.8768 -0.0807 8.9459 38 1 1.9983 -2.7092 -2.0780 39 1 2.0700 -2.6550 -0.3001 40 1 0.5489 -2.2724 -1.1420 41 1 0.6118 0.3701 -2.3794 42 1 0.5168 0.0156 -5.0492 43 1 1.3902 1.5237 -4.6872 44 1 3.7433 1.9682 -5.9869 45 1 3.0298 -1.3040 -9.7859 46 1 4.6707 -1.5563 -9.1440 47 1 3.3386 -2.6160 -8.6234 48 1 1.6352 -1.6597 -6.8318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328995457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:15 Heat of formation + Delta-G solvation = -16.096823 kcal Electronic energy + Delta-G solvation = -28234.882195 eV Core-core repulsion = 24132.711722 eV Total energy + Delta-G solvation = -4102.170472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14594 -40.82749 -40.24178 -38.46650 -36.07147 -35.25158 -34.51850 -33.74000 -32.91948 -31.81612 -30.10563 -29.06134 -28.23309 -26.73346 -25.96138 -24.60438 -22.05863 -22.01432 -21.29303 -20.90270 -20.63733 -20.29140 -18.37656 -17.74811 -17.56678 -17.20584 -16.72651 -16.63622 -16.27890 -16.14460 -15.85603 -15.48983 -15.32503 -15.07866 -14.87210 -14.55639 -14.33895 -14.21132 -14.05913 -13.90516 -13.58519 -13.46935 -13.40789 -13.17419 -13.09781 -13.01231 -12.84764 -12.59724 -12.45186 -12.40447 -11.96927 -11.86446 -11.60910 -11.51570 -11.50049 -10.83519 -10.42788 -10.34093 -10.23748 -10.00878 -9.35863 -9.27839 -8.40337 -6.01446 0.99096 1.31026 1.36871 1.45668 1.69533 1.78395 1.82175 1.97228 2.24119 2.36923 2.83981 3.15976 3.43006 3.67111 3.69859 3.98199 4.02030 4.08266 4.16226 4.27179 4.31573 4.37026 4.43480 4.44327 4.52653 4.54717 4.59300 4.67670 4.70952 4.83993 4.90243 4.90962 4.92540 5.06797 5.10168 5.21470 5.33759 5.53222 5.57572 5.60750 5.72758 5.91865 6.06653 6.17726 6.33579 6.60691 6.72754 6.76206 6.89238 7.40906 7.45241 7.98006 8.77404 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.001688 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.326821 B =16587.237096 C =16653.350356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.063 0.937 4 N -0.674 5.674 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.614 6.614 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.054 0.946 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.256 1.256 15 H -0.276 1.276 16 H -0.231 1.231 17 C 0.150 3.850 18 H 0.058 0.942 19 C -0.149 4.149 20 N -0.710 5.710 21 C 0.509 3.491 22 O -0.586 6.586 23 C -0.049 4.049 24 C -0.237 4.237 25 C 0.046 3.954 26 N -0.344 5.344 27 N -0.385 5.385 28 C 0.093 3.907 29 C 0.064 3.936 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.192 0.808 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 8.727 -33.508 36.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.081 0.919 4 N -0.308 5.308 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.499 6.499 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.072 0.928 11 C -0.214 4.214 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.180 1.180 15 H -0.202 1.202 16 H -0.154 1.154 17 C 0.044 3.956 18 H 0.076 0.924 19 C -0.207 4.207 20 N -0.365 5.365 21 C 0.297 3.703 22 O -0.465 6.465 23 C -0.089 4.089 24 C -0.249 4.249 25 C -0.139 4.139 26 N -0.166 5.166 27 N -0.167 5.167 28 C -0.047 4.047 29 C -0.083 4.083 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.256 0.744 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.209 0.791 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.128 0.872 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.879 7.257 -34.283 36.693 hybrid contribution 0.371 0.892 1.356 1.665 sum -10.509 8.149 -32.927 35.511 Atomic orbital electron populations 1.21907 0.92545 1.02853 1.02694 1.21787 0.97742 0.95952 0.87284 0.91946 1.60233 1.34636 1.32310 1.03571 1.21689 1.03143 0.93651 0.88439 1.21021 0.82256 0.87933 0.85206 1.90550 1.55277 1.18658 1.85375 1.42021 1.60598 1.11812 1.08835 1.19010 1.42464 0.96048 0.88397 0.92815 1.26137 0.96364 1.05098 0.93812 1.69807 1.46329 1.39665 1.01792 0.85347 0.79456 0.76368 0.80222 1.17988 1.20167 1.15380 1.20749 0.97323 0.93073 0.84477 0.92381 1.22013 1.02557 0.95239 1.00891 1.46002 1.26378 1.56982 1.07171 1.21453 0.84210 0.79260 0.85391 1.90720 1.24949 1.44684 1.86128 1.19958 0.98572 1.03843 0.86546 1.19749 1.04214 0.98664 1.02297 1.24101 0.94866 1.00868 0.94057 1.77262 1.21255 0.97989 1.20119 1.48751 1.24884 1.18496 1.24524 1.22146 1.03863 0.91913 0.86768 1.22835 0.94326 1.00337 0.90758 0.92185 0.89510 0.92239 0.83943 0.90741 0.86342 0.77434 0.91173 0.94132 0.92466 0.90775 0.74419 0.85138 0.85446 0.79092 0.89102 0.89784 0.87241 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.93 71.98 0.64 -1.34 16 2 C 0.08 1.52 2.66 44.91 0.12 1.64 16 3 H 0.06 1.02 7.80 -2.39 -0.02 1.00 16 4 N -0.67 -18.73 5.14 -495.57 -2.55 -21.28 16 5 C 0.06 1.84 5.97 85.56 0.51 2.35 16 6 C 0.45 20.02 7.82 87.66 0.69 20.71 16 7 O -0.61 -34.12 15.78 -3.05 -0.05 -34.17 16 8 N -0.59 -27.68 5.09 -306.98 -1.56 -29.24 16 9 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 10 H 0.05 3.78 7.39 -2.92 -0.02 3.76 16 11 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 12 N -0.94 -56.64 13.96 21.66 0.30 -56.34 16 13 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 14 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 15 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 17 C 0.15 2.97 2.31 44.99 0.10 3.07 16 18 H 0.06 1.50 7.57 -2.39 -0.02 1.48 16 19 C -0.15 -3.33 9.02 71.98 0.65 -2.68 16 20 N -0.71 -9.49 4.99 -442.53 -2.21 -11.70 16 21 C 0.51 8.82 7.79 87.66 0.68 9.51 16 22 O -0.59 -16.94 15.69 -3.04 -0.05 -16.98 16 23 C -0.05 -0.44 6.19 29.10 0.18 -0.26 16 24 C -0.24 -3.78 4.59 -20.15 -0.09 -3.87 16 25 C 0.05 0.91 11.96 85.23 1.02 1.93 16 26 N -0.34 -7.92 12.58 -57.02 -0.72 -8.64 16 27 N -0.38 -6.67 4.01 -369.56 -1.48 -8.16 16 28 C 0.09 0.80 11.47 127.77 1.47 2.26 16 29 C 0.06 0.95 11.40 83.54 0.95 1.90 16 30 H 0.06 0.88 7.45 -2.39 -0.02 0.86 16 31 H 0.09 0.57 6.29 -2.39 -0.02 0.56 16 32 H 0.06 0.99 6.57 -2.39 -0.02 0.98 16 33 H 0.34 10.83 7.61 -89.69 -0.68 10.15 16 34 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 35 H 0.12 2.80 7.44 -2.39 -0.02 2.78 16 36 H 0.39 14.96 5.76 -92.71 -0.53 14.43 16 37 H 0.28 15.41 8.31 -92.72 -0.77 14.64 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.55 7.17 -2.39 -0.02 1.53 16 40 H 0.07 1.42 6.57 -2.38 -0.02 1.40 16 41 H 0.42 2.51 6.58 -92.71 -0.61 1.90 16 42 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -92.09 396.99 0.96 -91.14 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.87 Total: 38.69 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 8.24 Total: 16.25 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -8.21 Total: -135.35 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.10 Total: -51.15 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -92.09 0.96 -91.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.038 kcal (2) G-P(sol) polarization free energy of solvation -92.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds