Wall clock time and date at job start Tue Mar 31 2020 19:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 5 5 C 1.46904 * 110.99949 * 274.99434 * 4 2 1 6 6 C 1.50702 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99798 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99979 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99611 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00079 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99919 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47006 * 89.99972 * 13 11 9 15 15 H 1.48498 * 109.47500 * 210.00205 * 13 11 9 16 16 H 1.48495 * 109.47287 * 330.00366 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.08996 * 109.46952 * 300.00302 * 17 2 1 19 19 C 1.52996 * 109.47131 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47007 * 60.00219 * 17 2 1 21 21 C 1.34775 * 120.00054 * 205.00086 * 20 17 2 22 22 O 1.21279 * 119.99889 * 359.97438 * 21 20 17 23 23 C 1.50699 * 120.00072 * 180.02562 * 21 20 17 24 24 C 1.50698 * 109.47130 * 179.97438 * 23 21 20 25 25 C 1.39874 * 126.03784 * 269.68977 * 24 23 21 26 26 N 1.30841 * 108.19883 * 179.81988 * 25 24 23 27 27 N 1.40080 * 108.20906 * 0.43707 * 26 25 24 28 28 C 1.46500 * 126.04081 * 179.69957 * 27 26 25 29 29 C 1.34953 * 107.92277 * 359.72268 * 27 26 25 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.00900 * 110.99581 * 151.04678 * 4 2 1 34 34 H 1.09002 * 109.47300 * 300.00868 * 5 4 2 35 35 H 1.09006 * 109.46967 * 60.00497 * 5 4 2 36 36 H 0.97006 * 120.00439 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99553 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46997 * 60.00426 * 19 17 2 39 39 H 1.09000 * 109.47054 * 180.02562 * 19 17 2 40 40 H 1.09000 * 109.47380 * 300.00763 * 19 17 2 41 41 H 0.97006 * 120.00149 * 24.99865 * 20 17 2 42 42 H 1.08999 * 109.47104 * 299.99938 * 23 21 20 43 43 H 1.09006 * 109.47405 * 59.99947 * 23 21 20 44 44 H 1.07994 * 125.90260 * 359.97438 * 25 24 23 45 45 H 1.09003 * 109.47008 * 270.02148 * 28 27 26 46 46 H 1.08992 * 109.46982 * 30.02674 * 28 27 26 47 47 H 1.08997 * 109.47185 * 150.02862 * 28 27 26 48 48 H 1.07998 * 126.12878 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8694 -1.6983 3.4698 8 7 2.7286 0.1206 4.7324 9 6 3.1894 -0.5562 5.8321 10 1 3.4396 -1.6041 5.7555 11 6 3.3344 0.1059 7.0450 12 7 3.0304 1.3810 7.1380 13 14 3.9615 -0.8164 8.5435 14 1 5.4425 -0.7224 8.5986 15 1 3.3814 -0.2173 9.7722 16 1 3.5592 -2.2429 8.4509 17 6 2.0401 -0.7213 -1.2492 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2495 20 7 1.5518 -0.0307 -2.4454 21 6 1.4230 -0.7030 -3.6063 22 8 1.7118 -1.8797 -3.6608 23 6 0.9213 0.0075 -4.8369 24 6 0.8710 -0.9607 -5.9906 25 6 1.9039 -1.2119 -6.8997 26 7 1.4880 -2.1133 -7.7520 27 7 0.1719 -2.4574 -7.4177 28 6 -0.6704 -3.4281 -8.1210 29 6 -0.1833 -1.7364 -6.3336 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9173 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6164 2.5526 36 1 2.5042 1.0618 4.8011 37 1 3.1313 1.8431 7.9849 38 1 3.9337 -1.2343 -0.3595 39 1 3.9333 -1.2342 -2.1397 40 1 3.9330 0.3070 -1.2496 41 1 1.3210 0.9105 -2.4018 42 1 -0.0778 0.4001 -4.6478 43 1 1.5942 0.8293 -5.0818 44 1 2.8775 -0.7445 -6.8971 45 1 -1.2298 -2.9213 -8.9074 46 1 -0.0421 -4.2015 -8.5627 47 1 -1.3660 -3.8836 -7.4163 48 1 -1.1381 -1.7719 -5.8302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328995458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:18 Heat of formation + Delta-G solvation = 6.560677 kcal Electronic energy + Delta-G solvation = -28175.966545 eV Core-core repulsion = 24074.778576 eV Total energy + Delta-G solvation = -4101.187969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51312 -39.92016 -38.43229 -37.22069 -34.40480 -33.93729 -33.77289 -32.20059 -31.25960 -30.63161 -29.83110 -28.52452 -26.45195 -26.03475 -24.26545 -23.30524 -21.39795 -21.13689 -20.54122 -20.04005 -19.28790 -17.93217 -17.41064 -17.12292 -16.40841 -16.03462 -15.62321 -15.38832 -15.34864 -14.70756 -14.59098 -14.39100 -14.01553 -13.87947 -13.74158 -13.63193 -13.48118 -13.25577 -13.05623 -12.86436 -12.74263 -12.43912 -12.34097 -12.10413 -11.90007 -11.66636 -11.55095 -11.42130 -11.30069 -11.03751 -10.87307 -10.59321 -10.38863 -10.21430 -9.97354 -9.67848 -9.50622 -9.18938 -8.66487 -8.45109 -8.09173 -7.95716 -6.41555 -3.82238 1.61554 2.23222 2.44415 2.57204 3.13910 3.18316 3.27050 3.33426 3.91116 4.12120 4.17794 4.36025 4.51084 4.55233 4.68959 4.74875 4.78692 4.86845 4.92183 5.01120 5.03387 5.14479 5.17209 5.25621 5.30138 5.39393 5.49343 5.53595 5.67306 5.68319 5.78506 5.79227 5.91131 5.97099 5.99826 6.16692 6.23399 6.34201 6.35501 6.39488 6.70142 7.20438 7.38912 7.42051 7.55675 7.64921 8.06738 8.16284 8.61569 9.18320 9.54514 10.06062 10.76173 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.001592 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.550252 B =17580.169536 C =17691.263708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.046 0.954 4 N -0.662 5.662 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.142 3.858 18 H 0.097 0.903 19 C -0.170 4.170 20 N -0.725 5.725 21 C 0.511 3.489 22 O -0.529 6.529 23 C -0.059 4.059 24 C -0.221 4.221 25 C 0.063 3.937 26 N -0.300 5.300 27 N -0.377 5.377 28 C 0.102 3.898 29 C 0.070 3.930 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.180 0.820 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 2.805 -28.035 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.064 0.936 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.037 3.963 18 H 0.115 0.885 19 C -0.228 4.228 20 N -0.378 5.378 21 C 0.297 3.703 22 O -0.404 6.404 23 C -0.100 4.100 24 C -0.233 4.233 25 C -0.123 4.123 26 N -0.121 5.121 27 N -0.159 5.159 28 C -0.039 4.039 29 C -0.077 4.077 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.232 0.768 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.197 0.803 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.590 0.174 -28.902 30.152 hybrid contribution 0.579 1.746 1.514 2.382 sum -8.012 1.920 -27.388 28.600 Atomic orbital electron populations 1.21797 0.94232 1.02701 1.00935 1.21738 0.96475 0.95826 0.89270 0.93622 1.60178 1.35374 1.31865 1.02331 1.21720 1.01303 0.93839 0.91224 1.19803 0.84967 0.88212 0.84439 1.90532 1.55225 1.16131 1.84730 1.41857 1.57779 1.12432 1.07968 1.19715 1.39862 0.96487 0.86830 0.87906 1.25253 0.97656 0.95785 0.99221 1.69613 1.48688 1.08869 1.27177 0.85856 0.78757 0.79533 0.80137 1.20437 1.20933 1.19406 1.21032 0.93823 0.98199 0.83269 0.88455 1.22252 0.95377 1.02107 1.03081 1.46042 1.68111 1.13904 1.09712 1.20741 0.77736 0.87563 0.84269 1.90731 1.48929 1.16042 1.84730 1.19888 1.03328 0.96959 0.89862 1.19385 0.95055 1.06913 1.01945 1.23711 0.99576 0.95947 0.93083 1.77344 0.92329 1.17902 1.24511 1.48389 1.10960 1.33082 1.23429 1.21849 0.93577 0.91094 0.97401 1.22248 1.00462 0.94370 0.90607 0.92902 0.91827 0.92388 0.82573 0.93847 0.89556 0.77479 0.91901 0.90971 0.91726 0.92559 0.76808 0.88430 0.88162 0.80264 0.90799 0.89291 0.89451 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.26 37.16 0.34 -1.15 16 2 C 0.08 0.90 2.28 -67.71 -0.15 0.74 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 4 N -0.66 -10.47 5.93 -107.98 -0.64 -11.11 16 5 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 6 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 7 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 8 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 9 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 10 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 13 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.14 1.58 2.29 -67.93 -0.16 1.42 16 18 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 19 C -0.17 -1.92 9.25 37.16 0.34 -1.58 16 20 N -0.73 -6.07 4.38 -53.81 -0.24 -6.30 16 21 C 0.51 5.05 7.79 -10.99 -0.09 4.97 16 22 O -0.53 -7.82 15.70 5.56 0.09 -7.73 16 23 C -0.06 -0.38 6.18 -29.04 -0.18 -0.56 16 24 C -0.22 -1.98 4.59 -105.05 -0.48 -2.46 16 25 C 0.06 0.63 11.96 -17.36 -0.21 0.43 16 26 N -0.30 -3.45 12.58 30.62 0.39 -3.06 16 27 N -0.38 -3.46 4.01 -68.17 -0.27 -3.74 16 28 C 0.10 0.50 11.47 59.85 0.69 1.19 16 29 C 0.07 0.59 11.40 -17.22 -0.20 0.39 16 30 H 0.05 0.43 7.45 -51.93 -0.39 0.04 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 33 H 0.35 5.83 5.87 -39.29 -0.23 5.60 16 34 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.09 1.37 7.44 -51.93 -0.39 0.99 16 36 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 2.17 8.39 -40.82 -0.34 1.82 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -37.00 403.88 -6.64 -43.63 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -7.33 Total: 13.42 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.44 Total: 6.52 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.10 Total: -62.19 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.00 -6.64 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.194 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds