Wall clock time and date at job start Tue Mar 31 2020 19:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 5 5 C 1.46904 * 110.99949 * 274.99434 * 4 2 1 6 6 C 1.50702 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99798 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99979 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99611 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00079 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99919 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47006 * 89.99972 * 13 11 9 15 15 H 1.48498 * 109.47500 * 210.00205 * 13 11 9 16 16 H 1.48495 * 109.47287 * 330.00366 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.08996 * 109.46952 * 300.00302 * 17 2 1 19 19 C 1.52996 * 109.47131 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47007 * 60.00219 * 17 2 1 21 21 C 1.34775 * 120.00054 * 205.00086 * 20 17 2 22 22 O 1.21279 * 119.99889 * 359.97438 * 21 20 17 23 23 C 1.50699 * 120.00072 * 180.02562 * 21 20 17 24 24 C 1.50698 * 109.47130 * 179.97438 * 23 21 20 25 25 C 1.39874 * 126.03784 * 269.68977 * 24 23 21 26 26 N 1.30841 * 108.19883 * 179.81988 * 25 24 23 27 27 N 1.40080 * 108.20906 * 0.43707 * 26 25 24 28 28 C 1.46500 * 126.04081 * 179.69957 * 27 26 25 29 29 C 1.34953 * 107.92277 * 359.72268 * 27 26 25 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.00900 * 110.99581 * 151.04678 * 4 2 1 34 34 H 1.09002 * 109.47300 * 300.00868 * 5 4 2 35 35 H 1.09006 * 109.46967 * 60.00497 * 5 4 2 36 36 H 0.97006 * 120.00439 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99553 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46997 * 60.00426 * 19 17 2 39 39 H 1.09000 * 109.47054 * 180.02562 * 19 17 2 40 40 H 1.09000 * 109.47380 * 300.00763 * 19 17 2 41 41 H 0.97006 * 120.00149 * 24.99865 * 20 17 2 42 42 H 1.08999 * 109.47104 * 299.99938 * 23 21 20 43 43 H 1.09006 * 109.47405 * 59.99947 * 23 21 20 44 44 H 1.07994 * 125.90260 * 359.97438 * 25 24 23 45 45 H 1.09003 * 109.47008 * 270.02148 * 28 27 26 46 46 H 1.08992 * 109.46982 * 30.02674 * 28 27 26 47 47 H 1.08997 * 109.47185 * 150.02862 * 28 27 26 48 48 H 1.07998 * 126.12878 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8694 -1.6983 3.4698 8 7 2.7286 0.1206 4.7324 9 6 3.1894 -0.5562 5.8321 10 1 3.4396 -1.6041 5.7555 11 6 3.3344 0.1059 7.0450 12 7 3.0304 1.3810 7.1380 13 14 3.9615 -0.8164 8.5435 14 1 5.4425 -0.7224 8.5986 15 1 3.3814 -0.2173 9.7722 16 1 3.5592 -2.2429 8.4509 17 6 2.0401 -0.7213 -1.2492 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2495 20 7 1.5518 -0.0307 -2.4454 21 6 1.4230 -0.7030 -3.6063 22 8 1.7118 -1.8797 -3.6608 23 6 0.9213 0.0075 -4.8369 24 6 0.8710 -0.9607 -5.9906 25 6 1.9039 -1.2119 -6.8997 26 7 1.4880 -2.1133 -7.7520 27 7 0.1719 -2.4574 -7.4177 28 6 -0.6704 -3.4281 -8.1210 29 6 -0.1833 -1.7364 -6.3336 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9173 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6164 2.5526 36 1 2.5042 1.0618 4.8011 37 1 3.1313 1.8431 7.9849 38 1 3.9337 -1.2343 -0.3595 39 1 3.9333 -1.2342 -2.1397 40 1 3.9330 0.3070 -1.2496 41 1 1.3210 0.9105 -2.4018 42 1 -0.0778 0.4001 -4.6478 43 1 1.5942 0.8293 -5.0818 44 1 2.8775 -0.7445 -6.8971 45 1 -1.2298 -2.9213 -8.9074 46 1 -0.0421 -4.2015 -8.5627 47 1 -1.3660 -3.8836 -7.4163 48 1 -1.1381 -1.7719 -5.8302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328995458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:17 Heat of formation + Delta-G solvation = -22.859075 kcal Electronic energy + Delta-G solvation = -28177.242282 eV Core-core repulsion = 24074.778576 eV Total energy + Delta-G solvation = -4102.463705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13694 -40.78832 -40.11564 -38.39819 -36.02422 -35.21787 -34.50999 -33.27513 -32.87202 -31.64327 -30.76585 -29.09516 -27.99579 -26.66907 -25.89621 -24.31758 -22.01805 -21.91622 -21.45374 -21.06264 -20.76031 -19.91390 -18.36416 -17.76531 -17.55937 -17.25322 -16.80331 -16.40289 -16.20037 -16.09644 -15.85164 -15.42864 -15.28522 -15.17034 -14.80040 -14.53292 -14.25220 -14.14426 -14.01976 -13.84125 -13.52545 -13.47175 -13.38973 -13.21610 -13.05083 -12.88532 -12.69286 -12.61246 -12.48480 -12.40780 -12.25691 -12.11773 -11.57656 -11.50451 -11.49263 -10.82701 -10.33436 -10.32840 -10.01736 -10.00189 -9.33090 -9.27132 -8.45969 -5.94393 0.99745 1.38447 1.42501 1.54967 1.70058 1.79077 1.83857 2.06584 2.28116 2.40590 3.04275 3.21539 3.53410 3.64321 3.68072 4.00791 4.03471 4.08469 4.22603 4.32201 4.33358 4.37424 4.43978 4.47979 4.48932 4.55170 4.62373 4.65291 4.68219 4.76165 4.87501 4.92286 4.93009 5.02538 5.07277 5.21832 5.23714 5.41843 5.44707 5.56823 5.73480 5.92341 6.13721 6.18330 6.40023 6.61523 6.74195 6.76888 7.13909 7.47026 7.57579 8.13459 8.71284 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.001592 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.550252 B =17580.169536 C =17691.263708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.073 0.927 4 N -0.682 5.682 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.626 6.626 8 N -0.572 5.572 9 C -0.335 4.335 10 H 0.077 0.923 11 C -0.011 4.011 12 N -0.918 5.918 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.151 3.849 18 H 0.063 0.937 19 C -0.164 4.164 20 N -0.708 5.708 21 C 0.511 3.489 22 O -0.585 6.585 23 C -0.048 4.048 24 C -0.237 4.237 25 C 0.047 3.953 26 N -0.344 5.344 27 N -0.385 5.385 28 C 0.093 3.907 29 C 0.064 3.936 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.344 0.656 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.418 0.582 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.192 0.808 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 5.100 -28.417 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.090 0.910 4 N -0.318 5.318 5 C -0.064 4.064 6 C 0.223 3.777 7 O -0.512 6.512 8 N -0.209 5.209 9 C -0.465 4.465 10 H 0.095 0.905 11 C -0.211 4.211 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.200 1.200 17 C 0.045 3.955 18 H 0.082 0.918 19 C -0.223 4.223 20 N -0.362 5.362 21 C 0.299 3.701 22 O -0.464 6.464 23 C -0.089 4.089 24 C -0.249 4.249 25 C -0.138 4.138 26 N -0.166 5.166 27 N -0.167 5.167 28 C -0.047 4.047 29 C -0.083 4.083 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.255 0.745 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.209 0.791 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.127 0.873 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -9.852 2.542 -29.303 31.019 hybrid contribution 0.928 0.993 1.569 2.076 sum -8.924 3.535 -27.734 29.348 Atomic orbital electron populations 1.21803 0.93374 1.01772 1.02453 1.21791 0.96931 0.96558 0.87391 0.90960 1.60178 1.35218 1.32683 1.03687 1.21575 1.02474 0.93608 0.88783 1.20944 0.83200 0.87984 0.85527 1.90501 1.56690 1.18395 1.85632 1.41910 1.58241 1.12602 1.08156 1.19659 1.42186 0.95961 0.88707 0.90509 1.25993 0.97205 0.96622 1.01238 1.69664 1.48498 1.09597 1.28146 0.84951 0.78495 0.77970 0.77058 1.19632 1.19448 1.20024 1.20706 0.93545 0.96850 0.84384 0.91833 1.22185 0.95587 1.02851 1.01673 1.45835 1.67297 1.14656 1.08420 1.21415 0.76549 0.86947 0.85217 1.90722 1.51413 1.18677 1.85559 1.19952 1.05617 0.96453 0.86851 1.19752 0.94794 1.07806 1.02550 1.24096 1.00555 0.95849 0.93346 1.77254 0.94055 1.19240 1.26070 1.48746 1.10552 1.33501 1.23861 1.22144 0.93489 0.90697 0.98354 1.22838 1.01570 0.93648 0.90224 0.89628 0.94007 0.92591 0.83391 0.91078 0.87596 0.76867 0.91287 0.92511 0.93028 0.90624 0.74484 0.85123 0.85497 0.79090 0.89109 0.89756 0.87274 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.26 71.98 0.67 -1.92 16 2 C 0.08 1.73 2.28 44.92 0.10 1.83 16 3 H 0.07 1.19 7.80 -2.39 -0.02 1.17 16 4 N -0.68 -20.98 5.93 -495.54 -2.94 -23.92 16 5 C 0.07 2.23 5.97 85.56 0.51 2.74 16 6 C 0.44 20.64 7.82 87.66 0.69 21.32 16 7 O -0.63 -35.09 15.78 -3.07 -0.05 -35.14 16 8 N -0.57 -29.11 5.29 -306.98 -1.62 -30.73 16 9 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 10 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 11 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 12 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 13 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 C 0.15 3.20 2.29 44.99 0.10 3.30 16 18 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 19 C -0.16 -3.63 9.25 71.98 0.67 -2.96 16 20 N -0.71 -9.99 4.38 -442.55 -1.94 -11.93 16 21 C 0.51 9.16 7.79 87.66 0.68 9.84 16 22 O -0.58 -17.30 15.70 -3.03 -0.05 -17.34 16 23 C -0.05 -0.47 6.18 29.10 0.18 -0.29 16 24 C -0.24 -3.90 4.59 -20.14 -0.09 -3.99 16 25 C 0.05 0.93 11.96 85.24 1.02 1.95 16 26 N -0.34 -8.03 12.58 -57.02 -0.72 -8.75 16 27 N -0.38 -6.85 4.01 -369.57 -1.48 -8.33 16 28 C 0.09 0.84 11.47 127.77 1.47 2.31 16 29 C 0.06 0.98 11.40 83.54 0.95 1.93 16 30 H 0.08 1.04 7.45 -2.39 -0.02 1.03 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 33 H 0.34 11.47 5.87 -89.69 -0.53 10.95 16 34 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 35 H 0.11 3.10 7.44 -2.38 -0.02 3.08 16 36 H 0.40 18.99 7.90 -92.70 -0.73 18.26 16 37 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.06 1.43 6.21 -2.39 -0.01 1.41 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.42 2.73 8.39 -92.70 -0.78 1.95 16 42 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -84.14 403.88 0.70 -83.44 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -1.03 Total: 38.78 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 8.22 Total: 17.69 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -8.42 Total: -132.41 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.49 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -84.14 0.70 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.583 kcal (2) G-P(sol) polarization free energy of solvation -84.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds