Wall clock time and date at job start Tue Mar 31 2020 19:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.50697 * 109.46908 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00522 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00145 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99612 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47028 * 89.99894 * 13 11 9 15 15 H 1.48498 * 109.47366 * 209.99987 * 13 11 9 16 16 H 1.48503 * 109.47220 * 330.00176 * 13 11 9 17 17 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 18 18 H 1.08996 * 109.47729 * 184.99759 * 17 2 1 19 19 C 1.53001 * 109.47279 * 65.00040 * 17 2 1 20 20 N 1.46496 * 109.47128 * 305.00336 * 17 2 1 21 21 C 1.34781 * 120.00209 * 204.99948 * 20 17 2 22 22 O 1.21286 * 119.99826 * 359.97438 * 21 20 17 23 23 C 1.50695 * 120.00346 * 179.97438 * 21 20 17 24 24 C 1.50698 * 109.47203 * 179.97438 * 23 21 20 25 25 C 1.39874 * 126.04021 * 269.68931 * 24 23 21 26 26 N 1.30839 * 108.19839 * 179.81700 * 25 24 23 27 27 N 1.40082 * 108.20790 * 0.44503 * 26 25 24 28 28 C 1.46500 * 126.03772 * 179.69929 * 27 26 25 29 29 C 1.34941 * 107.92441 * 359.71562 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 34 34 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 35 35 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 36 36 H 0.97005 * 119.99644 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99274 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.47104 * 59.99686 * 19 17 2 39 39 H 1.08993 * 109.47832 * 180.02562 * 19 17 2 40 40 H 1.09001 * 109.46924 * 300.00271 * 19 17 2 41 41 H 0.96999 * 120.00528 * 24.99813 * 20 17 2 42 42 H 1.08998 * 109.47444 * 299.99922 * 23 21 20 43 43 H 1.09002 * 109.47292 * 59.99909 * 23 21 20 44 44 H 1.08000 * 125.90002 * 0.02562 * 25 24 23 45 45 H 1.09008 * 109.47015 * 270.02137 * 28 27 26 46 46 H 1.09002 * 109.47294 * 30.01803 * 28 27 26 47 47 H 1.08999 * 109.47262 * 150.02103 * 28 27 26 48 48 H 1.08002 * 126.13066 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5216 -3.5560 7 8 2.8678 -1.6985 -3.4703 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4378 -1.6042 -5.7560 11 6 3.3329 0.1058 -7.0454 12 7 3.0286 1.3808 -7.1384 13 14 3.9601 -0.8164 -8.5439 14 1 2.8116 -1.3996 -9.2828 15 1 4.6945 0.1213 -9.4307 16 1 4.8729 -1.9043 -8.1094 17 6 2.0400 -0.7212 1.2491 18 1 3.1263 -0.6444 1.2951 19 6 1.6353 -2.1955 1.1879 20 7 1.4559 -0.1037 2.4423 21 6 2.0913 -0.1939 3.6275 22 8 3.1465 -0.7866 3.7063 23 6 1.4907 0.4418 4.8547 24 6 2.3906 0.1974 6.0385 25 6 2.3222 -0.8919 6.9133 26 7 3.2669 -0.7572 7.8084 27 7 3.9608 0.4291 7.5373 28 6 5.0912 0.9607 8.3028 29 6 3.4039 0.9960 6.4467 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 2.5044 1.0621 -4.8010 37 1 3.1293 1.8429 -7.9853 38 1 2.0699 -2.6549 0.3001 39 1 1.9983 -2.7093 2.0779 40 1 0.5490 -2.2724 1.1420 41 1 0.6118 0.3700 2.3794 42 1 1.3851 1.5146 4.6936 43 1 0.5108 0.0052 5.0475 44 1 1.6143 -1.7056 6.8572 45 1 4.7199 1.6109 9.0949 46 1 5.6520 0.1360 8.7427 47 1 5.7427 1.5306 7.6404 48 1 3.7114 1.9216 5.9829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328995459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:21 Heat of formation + Delta-G solvation = 8.260167 kcal Electronic energy + Delta-G solvation = -28178.661750 eV Core-core repulsion = 24077.547476 eV Total energy + Delta-G solvation = -4101.114274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51425 -39.93750 -38.42916 -37.27913 -34.41044 -33.93806 -33.76359 -32.21026 -31.26934 -30.77235 -29.19924 -28.47456 -26.57322 -26.12492 -24.55948 -23.49415 -21.39787 -21.27082 -20.20264 -19.72730 -19.29787 -17.93716 -17.46826 -17.10435 -16.33733 -15.85851 -15.64525 -15.56433 -15.25595 -14.93607 -14.67082 -14.42925 -14.15202 -13.89045 -13.76675 -13.61088 -13.30220 -13.19986 -12.91775 -12.82665 -12.73790 -12.45631 -12.18184 -12.05243 -11.99746 -11.78909 -11.57842 -11.41334 -11.08370 -10.89054 -10.87084 -10.65558 -10.39061 -10.21461 -9.96592 -9.67913 -9.50552 -9.16835 -8.66524 -8.45859 -8.10414 -7.95749 -6.41573 -3.82216 1.61429 2.23184 2.44729 2.57204 3.15858 3.18440 3.27000 3.33130 3.91255 4.11392 4.17694 4.34767 4.50790 4.57100 4.69144 4.74784 4.78971 4.87169 4.92175 5.00925 5.03272 5.16162 5.18638 5.25621 5.30365 5.46443 5.49356 5.59733 5.61407 5.77163 5.78536 5.83283 5.95565 5.96008 6.00747 6.20095 6.29009 6.35509 6.43580 6.48522 6.70010 7.17968 7.40242 7.42122 7.55622 7.61536 8.06648 8.16450 8.61536 9.18289 9.54559 10.06047 10.76163 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.001647 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.356747 B =17001.299083 C =17332.454545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.046 0.954 4 N -0.657 5.657 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.142 3.858 18 H 0.084 0.916 19 C -0.157 4.157 20 N -0.727 5.727 21 C 0.510 3.490 22 O -0.531 6.531 23 C -0.059 4.059 24 C -0.221 4.221 25 C 0.064 3.936 26 N -0.300 5.300 27 N -0.377 5.377 28 C 0.102 3.898 29 C 0.069 3.931 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.351 0.649 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 5.761 27.981 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 H 0.064 0.936 4 N -0.291 5.291 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.037 3.963 18 H 0.102 0.898 19 C -0.215 4.215 20 N -0.381 5.381 21 C 0.296 3.704 22 O -0.406 6.406 23 C -0.101 4.101 24 C -0.233 4.233 25 C -0.123 4.123 26 N -0.121 5.121 27 N -0.159 5.159 28 C -0.039 4.039 29 C -0.077 4.077 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.578 3.968 28.884 29.374 hybrid contribution 0.160 1.470 -1.513 2.116 sum -3.419 5.438 27.371 28.115 Atomic orbital electron populations 1.21879 0.94481 1.02916 1.00862 1.21719 0.96515 0.95848 0.89339 0.93594 1.60187 1.34943 1.31709 1.02245 1.21730 1.01299 0.93878 0.91268 1.19793 0.84942 0.88204 0.84423 1.90528 1.55215 1.16121 1.84730 1.41860 1.57817 1.12405 1.07992 1.19710 1.39889 0.96458 0.86810 0.87905 1.25260 0.97682 0.95776 0.99236 1.69618 1.48769 1.08856 1.27117 0.85853 0.78881 0.78943 0.80587 1.20391 1.20962 1.19432 1.21031 0.98572 0.93391 0.83264 0.89770 1.22113 1.01978 0.94769 1.02626 1.46209 1.26075 1.57521 1.08293 1.20769 0.85055 0.80253 0.84367 1.90727 1.22473 1.42052 1.85379 1.19889 0.98549 1.02074 0.89553 1.19389 1.03339 0.98858 1.01697 1.23717 0.97249 0.98445 0.92874 1.77344 1.09120 1.01031 1.24579 1.48385 1.26857 1.17677 1.22940 1.21851 0.85990 0.99915 0.96166 1.22242 0.95356 0.99900 0.90244 0.93180 0.91178 0.92139 0.82839 0.89549 0.93869 0.77490 0.91906 0.90171 0.92900 0.92203 0.76574 0.88471 0.88109 0.80226 0.90792 0.89284 0.89469 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.93 37.16 0.33 -1.07 16 2 C 0.08 0.87 2.66 -67.71 -0.18 0.69 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.11 16 4 N -0.66 -10.11 5.14 -108.00 -0.55 -10.67 16 5 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 6 C 0.44 10.31 7.82 -10.98 -0.09 10.23 16 7 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 8 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 9 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 11 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 12 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 13 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.14 1.59 2.30 -67.94 -0.16 1.44 16 18 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 19 C -0.16 -1.87 9.02 37.16 0.34 -1.54 16 20 N -0.73 -6.30 4.99 -53.81 -0.27 -6.57 16 21 C 0.51 5.16 7.79 -10.99 -0.09 5.08 16 22 O -0.53 -7.93 15.70 5.55 0.09 -7.84 16 23 C -0.06 -0.39 6.18 -29.04 -0.18 -0.57 16 24 C -0.22 -2.01 4.59 -105.05 -0.48 -2.49 16 25 C 0.06 0.64 11.96 -17.36 -0.21 0.44 16 26 N -0.30 -3.47 12.58 30.63 0.39 -3.08 16 27 N -0.38 -3.50 4.01 -68.16 -0.27 -3.77 16 28 C 0.10 0.51 11.47 59.85 0.69 1.20 16 29 C 0.07 0.59 11.40 -17.23 -0.20 0.39 16 30 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 31 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 32 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.35 5.77 7.62 -39.29 -0.30 5.47 16 34 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 35 H 0.04 0.67 8.06 -51.93 -0.42 0.26 16 36 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.66 6.57 -51.93 -0.34 0.31 16 41 H 0.40 2.35 6.58 -40.82 -0.27 2.08 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -36.69 400.11 -6.51 -43.20 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -7.15 Total: 13.66 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.49 Total: 6.63 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.05 Total: -62.11 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.47 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.69 -6.51 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.464 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds