Wall clock time and date at job start Tue Mar 31 2020 19:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.50697 * 109.46908 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00522 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00145 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99612 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47028 * 89.99894 * 13 11 9 15 15 H 1.48498 * 109.47366 * 209.99987 * 13 11 9 16 16 H 1.48503 * 109.47220 * 330.00176 * 13 11 9 17 17 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 18 18 H 1.08996 * 109.47729 * 184.99759 * 17 2 1 19 19 C 1.53001 * 109.47279 * 65.00040 * 17 2 1 20 20 N 1.46496 * 109.47128 * 305.00336 * 17 2 1 21 21 C 1.34781 * 120.00209 * 204.99948 * 20 17 2 22 22 O 1.21286 * 119.99826 * 359.97438 * 21 20 17 23 23 C 1.50695 * 120.00346 * 179.97438 * 21 20 17 24 24 C 1.50698 * 109.47203 * 179.97438 * 23 21 20 25 25 C 1.39874 * 126.04021 * 269.68931 * 24 23 21 26 26 N 1.30839 * 108.19839 * 179.81700 * 25 24 23 27 27 N 1.40082 * 108.20790 * 0.44503 * 26 25 24 28 28 C 1.46500 * 126.03772 * 179.69929 * 27 26 25 29 29 C 1.34941 * 107.92441 * 359.71562 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 34 34 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 35 35 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 36 36 H 0.97005 * 119.99644 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99274 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.47104 * 59.99686 * 19 17 2 39 39 H 1.08993 * 109.47832 * 180.02562 * 19 17 2 40 40 H 1.09001 * 109.46924 * 300.00271 * 19 17 2 41 41 H 0.96999 * 120.00528 * 24.99813 * 20 17 2 42 42 H 1.08998 * 109.47444 * 299.99922 * 23 21 20 43 43 H 1.09002 * 109.47292 * 59.99909 * 23 21 20 44 44 H 1.08000 * 125.90002 * 0.02562 * 25 24 23 45 45 H 1.09008 * 109.47015 * 270.02137 * 28 27 26 46 46 H 1.09002 * 109.47294 * 30.01803 * 28 27 26 47 47 H 1.08999 * 109.47262 * 150.02103 * 28 27 26 48 48 H 1.08002 * 126.13066 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5216 -3.5560 7 8 2.8678 -1.6985 -3.4703 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4378 -1.6042 -5.7560 11 6 3.3329 0.1058 -7.0454 12 7 3.0286 1.3808 -7.1384 13 14 3.9601 -0.8164 -8.5439 14 1 2.8116 -1.3996 -9.2828 15 1 4.6945 0.1213 -9.4307 16 1 4.8729 -1.9043 -8.1094 17 6 2.0400 -0.7212 1.2491 18 1 3.1263 -0.6444 1.2951 19 6 1.6353 -2.1955 1.1879 20 7 1.4559 -0.1037 2.4423 21 6 2.0913 -0.1939 3.6275 22 8 3.1465 -0.7866 3.7063 23 6 1.4907 0.4418 4.8547 24 6 2.3906 0.1974 6.0385 25 6 2.3222 -0.8919 6.9133 26 7 3.2669 -0.7572 7.8084 27 7 3.9608 0.4291 7.5373 28 6 5.0912 0.9607 8.3028 29 6 3.4039 0.9960 6.4467 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 2.5044 1.0621 -4.8010 37 1 3.1293 1.8429 -7.9853 38 1 2.0699 -2.6549 0.3001 39 1 1.9983 -2.7093 2.0779 40 1 0.5490 -2.2724 1.1420 41 1 0.6118 0.3700 2.3794 42 1 1.3851 1.5146 4.6936 43 1 0.5108 0.0052 5.0475 44 1 1.6143 -1.7056 6.8572 45 1 4.7199 1.6109 9.0949 46 1 5.6520 0.1360 8.7427 47 1 5.7427 1.5306 7.6404 48 1 3.7114 1.9216 5.9829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328995459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:20 Heat of formation + Delta-G solvation = -20.806823 kcal Electronic energy + Delta-G solvation = -28179.922189 eV Core-core repulsion = 24077.547476 eV Total energy + Delta-G solvation = -4102.374713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14583 -40.81564 -40.11532 -38.44679 -36.03568 -35.22731 -34.51823 -33.27677 -32.90022 -31.78365 -30.09756 -29.06411 -28.10878 -26.72967 -26.10538 -24.67253 -22.05968 -22.02034 -21.11047 -20.89960 -20.62827 -19.91720 -18.39525 -17.72983 -17.59120 -17.17001 -16.67286 -16.52029 -16.25110 -16.14982 -15.89356 -15.60317 -15.30978 -15.24741 -14.88655 -14.39159 -14.25255 -14.19982 -13.91050 -13.61148 -13.51534 -13.42503 -13.38217 -13.18918 -13.02808 -13.01102 -12.82308 -12.62354 -12.46625 -12.40120 -12.12067 -11.86949 -11.62327 -11.50971 -11.49867 -10.83525 -10.34274 -10.33453 -10.01033 -10.00374 -9.35526 -9.27765 -8.46148 -5.94548 0.98987 1.38400 1.42242 1.54715 1.69528 1.78433 1.81919 2.06632 2.28083 2.40815 3.02619 3.21342 3.51852 3.67222 3.70216 3.98852 4.01637 4.08001 4.24760 4.31642 4.32994 4.37545 4.43502 4.48417 4.50780 4.56701 4.61707 4.67624 4.70645 4.84200 4.89687 4.90279 4.92526 5.06226 5.09051 5.21473 5.33188 5.41771 5.56089 5.59942 5.72825 5.90834 6.11885 6.17566 6.35676 6.61195 6.72335 6.76198 7.13696 7.44707 7.57450 8.13164 8.71163 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.001647 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.356747 B =17001.299083 C =17332.454545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.059 0.941 4 N -0.670 5.670 5 C 0.067 3.933 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.151 3.849 18 H 0.059 0.941 19 C -0.149 4.149 20 N -0.711 5.711 21 C 0.509 3.491 22 O -0.585 6.585 23 C -0.049 4.049 24 C -0.237 4.237 25 C 0.047 3.953 26 N -0.344 5.344 27 N -0.384 5.384 28 C 0.093 3.907 29 C 0.064 3.936 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.341 0.659 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.193 0.807 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 7.941 28.422 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.077 0.923 4 N -0.304 5.304 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.045 3.955 18 H 0.078 0.922 19 C -0.207 4.207 20 N -0.366 5.366 21 C 0.297 3.703 22 O -0.464 6.464 23 C -0.089 4.089 24 C -0.249 4.249 25 C -0.138 4.138 26 N -0.166 5.166 27 N -0.166 5.166 28 C -0.047 4.047 29 C -0.083 4.083 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.209 0.791 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.127 0.873 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.953 6.199 29.345 30.399 hybrid contribution 0.591 0.792 -1.578 1.862 sum -4.362 6.991 27.767 28.964 Atomic orbital electron populations 1.21899 0.92678 1.02837 1.02540 1.21776 0.97675 0.95868 0.87461 0.92278 1.60227 1.34519 1.32204 1.03420 1.21581 1.02442 0.93566 0.88965 1.20912 0.83164 0.87990 0.85462 1.90498 1.56580 1.18297 1.85600 1.41922 1.58343 1.12567 1.08217 1.19661 1.42154 0.95952 0.88658 0.90440 1.26011 0.97250 0.96619 1.01294 1.69671 1.48646 1.09611 1.28075 0.84942 0.78416 0.77806 0.77254 1.19618 1.19504 1.19964 1.20734 0.97349 0.93031 0.84366 0.92237 1.22016 1.02543 0.95250 1.00931 1.46013 1.26484 1.56954 1.07127 1.21453 0.84250 0.79264 0.85325 1.90717 1.25033 1.44530 1.86149 1.19956 0.98660 1.03856 0.86466 1.19749 1.04201 0.98594 1.02375 1.24100 0.97312 0.99309 0.93089 1.77256 1.10409 1.02830 1.26081 1.48744 1.27318 1.17130 1.23451 1.22147 0.85414 1.00159 0.96968 1.22830 0.94918 1.00727 0.89822 0.89462 0.92146 0.92549 0.83951 0.87391 0.91697 0.76932 0.91311 0.92337 0.94132 0.90856 0.74468 0.85164 0.85456 0.79060 0.89102 0.89738 0.87284 0.78299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.93 71.98 0.64 -1.67 16 2 C 0.08 1.70 2.66 44.91 0.12 1.82 16 3 H 0.06 1.12 7.80 -2.39 -0.02 1.10 16 4 N -0.67 -20.13 5.14 -495.59 -2.55 -22.68 16 5 C 0.07 2.20 5.96 85.56 0.51 2.71 16 6 C 0.44 20.65 7.82 87.66 0.69 21.33 16 7 O -0.62 -34.65 15.78 -3.05 -0.05 -34.70 16 8 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 9 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 10 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 12 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 13 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C 0.15 3.22 2.30 44.99 0.10 3.32 16 18 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 19 C -0.15 -3.55 9.02 71.98 0.65 -2.90 16 20 N -0.71 -10.46 4.99 -442.55 -2.21 -12.66 16 21 C 0.51 9.33 7.79 87.65 0.68 10.02 16 22 O -0.59 -17.37 15.70 -3.05 -0.05 -17.42 16 23 C -0.05 -0.49 6.18 29.10 0.18 -0.31 16 24 C -0.24 -3.94 4.59 -20.14 -0.09 -4.03 16 25 C 0.05 0.95 11.96 85.24 1.02 1.96 16 26 N -0.34 -8.04 12.58 -57.02 -0.72 -8.76 16 27 N -0.38 -6.87 4.01 -369.56 -1.48 -8.35 16 28 C 0.09 0.84 11.47 127.77 1.47 2.31 16 29 C 0.06 0.99 11.40 83.54 0.95 1.94 16 30 H 0.09 0.76 6.29 -2.39 -0.02 0.75 16 31 H 0.06 1.13 6.57 -2.39 -0.02 1.12 16 32 H 0.06 1.00 7.45 -2.38 -0.02 0.99 16 33 H 0.34 11.41 7.62 -89.70 -0.68 10.72 16 34 H 0.11 3.13 7.44 -2.38 -0.02 3.11 16 35 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 36 H 0.40 19.10 7.90 -92.70 -0.73 18.36 16 37 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 38 H 0.06 1.65 7.17 -2.39 -0.02 1.63 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.52 6.57 -2.39 -0.02 1.50 16 41 H 0.42 3.14 6.58 -92.71 -0.61 2.53 16 42 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.09 0.49 8.14 -2.38 -0.02 0.48 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -83.10 400.11 0.82 -82.27 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -1.01 Total: 39.08 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 8.20 Total: 18.06 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -8.29 Total: -132.36 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.10 Total: -52.12 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -83.10 0.82 -82.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328995459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.464 kcal (2) G-P(sol) polarization free energy of solvation -83.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds