Wall clock time and date at job start Tue Mar 31 2020 19:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47464 * 2 1 4 4 N 1.46899 * 109.47341 * 120.00057 * 2 1 3 5 5 C 1.46895 * 111.00314 * 274.99954 * 4 2 1 6 6 C 1.50695 * 109.47136 * 179.97438 * 5 4 2 7 7 O 1.21295 * 120.00521 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99710 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99563 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00521 * 0.02562 * 9 8 6 11 11 C 1.38956 * 119.99999 * 180.02562 * 9 8 6 12 12 N 1.31408 * 119.99575 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00202 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47341 * 89.99611 * 13 11 9 15 15 H 1.48502 * 109.46894 * 209.99484 * 13 11 9 16 16 H 1.48504 * 109.47357 * 329.99452 * 13 11 9 17 17 C 1.53001 * 109.47274 * 240.00265 * 2 1 3 18 18 H 1.08997 * 109.47474 * 174.99752 * 17 2 1 19 19 C 1.53005 * 109.47023 * 295.00153 * 17 2 1 20 20 N 1.46503 * 109.47170 * 54.99771 * 17 2 1 21 21 C 1.34769 * 120.00207 * 155.00432 * 20 17 2 22 22 O 1.21283 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50698 * 120.00252 * 180.02562 * 21 20 17 24 24 C 1.50697 * 109.47436 * 180.02562 * 23 21 20 25 25 C 1.34669 * 126.59585 * 85.16051 * 24 23 21 26 26 N 1.34133 * 108.02235 * 180.28483 * 25 24 23 27 27 C 1.30502 * 109.25197 * 359.73051 * 26 25 24 28 28 N 1.35041 * 108.70384 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.39764 * 180.02562 * 28 27 26 30 30 H 1.09006 * 109.47443 * 59.99563 * 1 2 3 31 31 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47140 * 299.99953 * 1 2 3 33 33 H 1.00908 * 110.99619 * 38.95750 * 4 2 1 34 34 H 1.09000 * 109.46950 * 299.99830 * 5 4 2 35 35 H 1.09000 * 109.46933 * 59.99628 * 5 4 2 36 36 H 0.96991 * 120.00144 * 0.02562 * 8 6 5 37 37 H 0.97000 * 120.00076 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46874 * 179.97438 * 19 17 2 39 39 H 1.09001 * 109.46971 * 299.99925 * 19 17 2 40 40 H 1.09002 * 109.46931 * 59.99756 * 19 17 2 41 41 H 0.97003 * 119.99968 * 335.00422 * 20 17 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 23 21 20 43 43 H 1.09007 * 109.47124 * 299.99518 * 23 21 20 44 44 H 1.07993 * 125.98713 * 0.05405 * 25 24 23 45 45 H 1.08005 * 125.64657 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47391 * 90.01916 * 29 28 27 47 47 H 1.09001 * 109.46813 * 330.01972 * 29 28 27 48 48 H 1.09004 * 109.47041 * 210.02099 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5874 -0.5220 3.5559 7 8 2.8669 -1.6991 3.4703 8 7 2.7283 0.1204 4.7324 9 6 3.1882 -0.5568 5.8322 10 1 3.4379 -1.6048 5.7558 11 6 3.3330 0.1052 7.0453 12 7 3.0297 1.3804 7.1382 13 14 3.9602 -0.8173 8.5436 14 1 5.4412 -0.7231 8.5989 15 1 3.3800 -0.2182 9.7724 16 1 3.5581 -2.2438 8.4510 17 6 2.0399 -0.7212 -1.2493 18 1 3.1262 -0.6443 -1.2952 19 6 1.6351 -2.1954 -1.1881 20 7 1.4558 -0.1036 -2.4424 21 6 2.0911 -0.1937 -3.6276 22 8 3.1467 -0.7857 -3.7064 23 6 1.4905 0.4421 -4.8548 24 6 2.3902 0.1977 -6.0387 25 6 2.3977 -0.8919 -6.8300 26 7 3.3476 -0.7217 -7.7616 27 6 3.9251 0.4346 -7.5811 28 7 3.3553 1.0419 -6.5180 29 6 3.7075 2.3566 -5.9761 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.4495 -1.4980 1.4099 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6162 2.5525 36 1 2.5045 1.0616 4.8010 37 1 3.1311 1.8426 7.9849 38 1 1.9981 -2.7091 -2.0783 39 1 2.0698 -2.6550 -0.3003 40 1 0.5488 -2.2723 -1.1421 41 1 0.6117 0.3702 -2.3794 42 1 1.3848 1.5149 -4.6935 43 1 0.5104 0.0055 -5.0475 44 1 1.7545 -1.7536 -6.7295 45 1 4.7261 0.8388 -8.1824 46 1 3.1051 3.1236 -6.4629 47 1 4.7638 2.5539 -6.1590 48 1 3.5157 2.3706 -4.9032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329169038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:05 Heat of formation + Delta-G solvation = -7.962464 kcal Electronic energy + Delta-G solvation = -28507.746283 eV Core-core repulsion = 24405.928543 eV Total energy + Delta-G solvation = -4101.817740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36923 -40.06926 -38.51229 -37.37162 -34.52116 -34.34858 -33.82502 -32.68553 -31.30657 -30.76748 -29.15868 -27.44983 -27.20940 -26.42543 -24.69025 -23.76590 -21.72466 -21.41030 -20.11406 -19.83412 -19.34306 -17.97552 -17.62276 -17.34324 -16.20588 -16.03900 -15.78684 -15.66589 -15.50166 -14.75420 -14.66035 -14.56984 -14.11392 -14.04262 -13.90626 -13.76516 -13.36255 -13.28610 -13.22295 -13.12102 -12.93901 -12.53431 -12.30869 -12.24778 -12.20400 -11.92123 -11.57230 -11.44884 -11.07010 -10.99721 -10.87162 -10.41030 -10.24000 -10.21341 -10.11214 -9.80703 -9.53166 -9.25981 -8.60104 -8.50594 -8.11779 -7.98537 -6.44168 -3.84866 1.68761 2.39797 2.48193 2.84940 3.09877 3.16516 3.25335 3.31223 3.87779 4.08247 4.15831 4.30766 4.31488 4.46373 4.53658 4.62358 4.67597 4.70908 4.77505 4.86515 4.98833 5.04177 5.14312 5.15778 5.23322 5.32210 5.35592 5.49408 5.58328 5.62667 5.74540 5.80066 5.92282 5.95334 6.03595 6.06995 6.22532 6.33057 6.41773 6.48180 6.90330 7.11618 7.28752 7.53194 7.57948 7.83677 8.02982 8.03854 8.58570 9.15619 9.51547 10.02882 10.73543 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001723 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.521261 B =16249.147978 C =16446.820808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.081 0.919 4 N -0.659 5.659 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.154 3.846 18 H 0.095 0.905 19 C -0.163 4.163 20 N -0.727 5.727 21 C 0.510 3.490 22 O -0.523 6.523 23 C -0.065 4.065 24 C -0.009 4.009 25 C -0.008 4.008 26 N -0.494 5.494 27 C 0.183 3.817 28 N -0.455 5.455 29 C 0.071 3.929 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.167 0.833 45 H 0.204 0.796 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 6.961 -25.283 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 H 0.099 0.901 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.050 3.950 18 H 0.113 0.887 19 C -0.221 4.221 20 N -0.381 5.381 21 C 0.294 3.706 22 O -0.397 6.397 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.156 4.156 26 N -0.212 5.212 27 C -0.099 4.099 28 N -0.138 5.138 29 C -0.072 4.072 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.232 0.768 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.184 0.816 45 H 0.221 0.779 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.473 5.513 -25.925 27.064 hybrid contribution -1.357 1.319 1.819 2.625 sum -6.830 6.832 -24.106 25.970 Atomic orbital electron populations 1.22619 0.97372 1.02786 1.02006 1.21718 0.92603 0.98103 0.90883 0.90070 1.60019 1.57750 1.09120 1.02259 1.21700 0.99938 0.95665 0.90790 1.19793 0.85255 0.88261 0.84161 1.90533 1.55260 1.16239 1.84579 1.41857 1.57770 1.12431 1.07952 1.19711 1.39961 0.96480 0.86727 0.87890 1.25264 0.97627 0.95793 0.99274 1.69609 1.48664 1.08861 1.27216 0.85851 0.78847 0.79485 0.80073 1.20378 1.20943 1.19411 1.20883 0.99404 0.92505 0.82222 0.88725 1.22172 1.01041 0.95650 1.03265 1.46220 1.25911 1.57462 1.08461 1.20471 0.85215 0.80628 0.84248 1.90777 1.22131 1.41655 1.85182 1.20029 0.98600 1.02682 0.89310 1.20372 0.97495 0.94220 1.00309 1.21983 1.00653 0.98205 0.94775 1.70276 1.09668 1.15759 1.25469 1.24899 1.01874 0.91222 0.91895 1.45205 1.27951 1.16022 1.24646 1.22045 1.02771 0.81780 1.00614 0.92512 0.91566 0.91971 0.82587 0.89613 0.93764 0.77494 0.91880 0.92523 0.90041 0.92850 0.76806 0.88393 0.86563 0.81618 0.77901 0.90403 0.89177 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.68 37.15 0.32 -1.25 16 2 C 0.08 0.84 2.64 -67.72 -0.18 0.66 16 3 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 4 N -0.66 -9.82 5.23 -108.00 -0.56 -10.38 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 7 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 8 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 13 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.15 1.70 2.63 -67.93 -0.18 1.52 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 19 C -0.16 -1.87 8.86 37.16 0.33 -1.54 16 20 N -0.73 -5.89 4.99 -53.80 -0.27 -6.16 16 21 C 0.51 5.00 7.79 -10.99 -0.09 4.91 16 22 O -0.52 -7.80 15.70 5.56 0.09 -7.72 16 23 C -0.06 -0.41 5.88 -29.04 -0.17 -0.58 16 24 C -0.01 -0.09 5.45 -81.60 -0.44 -0.53 16 25 C -0.01 -0.09 11.79 -17.81 -0.21 -0.30 16 26 N -0.49 -6.13 11.25 -14.66 -0.16 -6.30 16 27 C 0.18 1.71 12.56 -90.37 -1.14 0.57 16 28 N -0.46 -3.80 3.15 -121.36 -0.38 -4.19 16 29 C 0.07 0.31 10.83 59.85 0.65 0.96 16 30 H 0.06 0.32 6.29 -51.93 -0.33 0.00 16 31 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 32 H 0.06 0.56 7.45 -51.92 -0.39 0.17 16 33 H 0.35 5.47 7.39 -39.29 -0.29 5.18 16 34 H 0.09 1.32 8.06 -51.93 -0.42 0.91 16 35 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 40 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 41 H 0.40 2.03 6.58 -40.82 -0.27 1.76 16 42 H 0.10 0.37 7.63 -51.93 -0.40 -0.02 16 43 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.20 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.08 0.38 7.67 -51.93 -0.40 -0.01 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -37.06 397.56 -8.12 -45.19 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.09 Total: 13.41 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.46 Total: 7.37 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.71 Total: -64.68 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.06 -8.12 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.224 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds