Wall clock time and date at job start Tue Mar 31 2020 19:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47464 * 2 1 4 4 N 1.46899 * 109.47341 * 120.00057 * 2 1 3 5 5 C 1.46895 * 111.00314 * 274.99954 * 4 2 1 6 6 C 1.50695 * 109.47136 * 179.97438 * 5 4 2 7 7 O 1.21295 * 120.00521 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99710 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99563 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00521 * 0.02562 * 9 8 6 11 11 C 1.38956 * 119.99999 * 180.02562 * 9 8 6 12 12 N 1.31408 * 119.99575 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00202 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47341 * 89.99611 * 13 11 9 15 15 H 1.48502 * 109.46894 * 209.99484 * 13 11 9 16 16 H 1.48504 * 109.47357 * 329.99452 * 13 11 9 17 17 C 1.53001 * 109.47274 * 240.00265 * 2 1 3 18 18 H 1.08997 * 109.47474 * 174.99752 * 17 2 1 19 19 C 1.53005 * 109.47023 * 295.00153 * 17 2 1 20 20 N 1.46503 * 109.47170 * 54.99771 * 17 2 1 21 21 C 1.34769 * 120.00207 * 155.00432 * 20 17 2 22 22 O 1.21283 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50698 * 120.00252 * 180.02562 * 21 20 17 24 24 C 1.50697 * 109.47436 * 180.02562 * 23 21 20 25 25 C 1.34669 * 126.59585 * 85.16051 * 24 23 21 26 26 N 1.34133 * 108.02235 * 180.28483 * 25 24 23 27 27 C 1.30502 * 109.25197 * 359.73051 * 26 25 24 28 28 N 1.35041 * 108.70384 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.39764 * 180.02562 * 28 27 26 30 30 H 1.09006 * 109.47443 * 59.99563 * 1 2 3 31 31 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47140 * 299.99953 * 1 2 3 33 33 H 1.00908 * 110.99619 * 38.95750 * 4 2 1 34 34 H 1.09000 * 109.46950 * 299.99830 * 5 4 2 35 35 H 1.09000 * 109.46933 * 59.99628 * 5 4 2 36 36 H 0.96991 * 120.00144 * 0.02562 * 8 6 5 37 37 H 0.97000 * 120.00076 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46874 * 179.97438 * 19 17 2 39 39 H 1.09001 * 109.46971 * 299.99925 * 19 17 2 40 40 H 1.09002 * 109.46931 * 59.99756 * 19 17 2 41 41 H 0.97003 * 119.99968 * 335.00422 * 20 17 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 23 21 20 43 43 H 1.09007 * 109.47124 * 299.99518 * 23 21 20 44 44 H 1.07993 * 125.98713 * 0.05405 * 25 24 23 45 45 H 1.08005 * 125.64657 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47391 * 90.01916 * 29 28 27 47 47 H 1.09001 * 109.46813 * 330.01972 * 29 28 27 48 48 H 1.09004 * 109.47041 * 210.02099 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5874 -0.5220 3.5559 7 8 2.8669 -1.6991 3.4703 8 7 2.7283 0.1204 4.7324 9 6 3.1882 -0.5568 5.8322 10 1 3.4379 -1.6048 5.7558 11 6 3.3330 0.1052 7.0453 12 7 3.0297 1.3804 7.1382 13 14 3.9602 -0.8173 8.5436 14 1 5.4412 -0.7231 8.5989 15 1 3.3800 -0.2182 9.7724 16 1 3.5581 -2.2438 8.4510 17 6 2.0399 -0.7212 -1.2493 18 1 3.1262 -0.6443 -1.2952 19 6 1.6351 -2.1954 -1.1881 20 7 1.4558 -0.1036 -2.4424 21 6 2.0911 -0.1937 -3.6276 22 8 3.1467 -0.7857 -3.7064 23 6 1.4905 0.4421 -4.8548 24 6 2.3902 0.1977 -6.0387 25 6 2.3977 -0.8919 -6.8300 26 7 3.3476 -0.7217 -7.7616 27 6 3.9251 0.4346 -7.5811 28 7 3.3553 1.0419 -6.5180 29 6 3.7075 2.3566 -5.9761 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.4495 -1.4980 1.4099 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6162 2.5525 36 1 2.5045 1.0616 4.8010 37 1 3.1311 1.8426 7.9849 38 1 1.9981 -2.7091 -2.0783 39 1 2.0698 -2.6550 -0.3003 40 1 0.5488 -2.2723 -1.1421 41 1 0.6117 0.3702 -2.3794 42 1 1.3848 1.5149 -4.6935 43 1 0.5104 0.0055 -5.0475 44 1 1.7545 -1.7536 -6.7295 45 1 4.7261 0.8388 -8.1824 46 1 3.1051 3.1236 -6.4629 47 1 4.7638 2.5539 -6.1590 48 1 3.5157 2.3706 -4.9032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329169038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:05 Heat of formation + Delta-G solvation = -36.442850 kcal Electronic energy + Delta-G solvation = -28508.981285 eV Core-core repulsion = 24405.928543 eV Total energy + Delta-G solvation = -4103.052742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.02469 -40.93092 -40.15152 -38.53867 -36.05383 -35.32803 -34.94883 -33.41923 -33.23420 -31.78228 -30.04120 -28.14689 -27.87411 -27.73128 -26.02131 -25.06008 -22.42488 -22.18886 -21.15992 -20.85862 -20.60049 -19.93118 -18.48220 -17.95515 -17.63734 -17.07219 -16.82455 -16.43621 -16.41613 -16.31440 -15.94128 -15.64204 -15.29813 -15.18231 -14.86064 -14.73134 -14.53146 -14.12024 -13.92647 -13.90261 -13.67500 -13.50242 -13.36571 -13.32362 -13.14807 -13.08096 -12.92639 -12.86803 -12.54009 -12.41812 -12.12530 -11.85462 -11.80193 -11.50825 -11.00552 -10.91856 -10.45507 -10.35998 -10.07872 -10.01197 -9.30782 -9.28080 -8.46983 -5.95249 1.02419 1.37618 1.41692 1.53985 1.67080 1.93487 2.05995 2.11325 2.27810 2.35770 3.02053 3.20657 3.56014 3.58030 3.78698 3.89742 3.90892 3.95963 4.03389 4.17838 4.24810 4.30703 4.43400 4.44106 4.47261 4.47995 4.56606 4.60198 4.63684 4.71152 4.77265 4.84447 4.88565 4.99358 5.06181 5.25023 5.40001 5.41090 5.44200 5.54655 5.80310 5.90165 6.11306 6.31983 6.41567 6.60256 6.62046 7.13063 7.14093 7.33369 7.56883 8.12619 8.70303 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001723 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.521261 B =16249.147978 C =16446.820808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.092 0.908 4 N -0.679 5.679 5 C 0.069 3.931 6 C 0.436 3.564 7 O -0.624 6.624 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.273 1.273 15 H -0.269 1.269 16 H -0.274 1.274 17 C 0.163 3.837 18 H 0.058 0.942 19 C -0.156 4.156 20 N -0.707 5.707 21 C 0.510 3.490 22 O -0.581 6.581 23 C -0.055 4.055 24 C -0.011 4.011 25 C -0.045 4.045 26 N -0.541 5.541 27 C 0.176 3.824 28 N -0.456 5.456 29 C 0.064 3.936 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.348 0.652 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.416 0.584 42 H 0.134 0.866 43 H 0.147 0.853 44 H 0.166 0.834 45 H 0.235 0.765 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 9.461 -25.631 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.110 0.890 4 N -0.312 5.312 5 C -0.064 4.064 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.210 5.210 9 C -0.463 4.463 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.199 1.199 17 C 0.057 3.943 18 H 0.076 0.924 19 C -0.215 4.215 20 N -0.362 5.362 21 C 0.297 3.703 22 O -0.460 6.460 23 C -0.096 4.096 24 C -0.127 4.127 25 C -0.193 4.193 26 N -0.259 5.259 27 C -0.106 4.106 28 N -0.138 5.138 29 C -0.077 4.077 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.168 0.832 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.256 0.744 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.184 0.816 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.157 8.085 -26.278 28.410 hybrid contribution -0.821 0.540 1.861 2.105 sum -7.978 8.625 -24.416 27.096 Atomic orbital electron populations 1.22563 0.94771 1.03240 1.03666 1.21718 0.94552 0.97799 0.88509 0.89020 1.59953 1.59021 1.09301 1.02901 1.21533 1.01349 0.95138 0.88344 1.20961 0.83415 0.88038 0.85231 1.90503 1.56638 1.18464 1.85472 1.41920 1.58338 1.12604 1.08177 1.19652 1.42170 0.95944 0.88583 0.90469 1.26006 0.97249 0.96640 1.01315 1.69660 1.48590 1.09592 1.28154 0.84952 0.78426 0.78045 0.77063 1.19840 1.19416 1.19856 1.20563 0.97556 0.92529 0.83673 0.92403 1.22084 1.02239 0.95802 1.01329 1.45964 1.26331 1.56802 1.07112 1.21082 0.84359 0.79607 0.85255 1.90770 1.24868 1.44301 1.86022 1.20134 0.98664 1.04721 0.86045 1.20760 0.97668 0.93742 1.00489 1.22230 1.01575 0.99467 0.95988 1.70195 1.11007 1.17752 1.26990 1.25509 1.02065 0.90651 0.92383 1.45476 1.27158 1.17028 1.24142 1.22345 1.04247 0.80410 1.00741 0.89093 0.91751 0.92068 0.83181 0.87937 0.90902 0.76910 0.91303 0.94180 0.92273 0.90565 0.74436 0.84792 0.83558 0.81629 0.74937 0.87834 0.87880 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 8.68 71.98 0.62 -1.75 16 2 C 0.08 1.62 2.64 44.91 0.12 1.74 16 3 H 0.09 1.61 7.80 -2.39 -0.02 1.59 16 4 N -0.68 -19.67 5.23 -495.61 -2.59 -22.26 16 5 C 0.07 2.18 5.97 85.56 0.51 2.69 16 6 C 0.44 20.28 7.82 87.65 0.69 20.96 16 7 O -0.62 -34.38 15.78 -3.08 -0.05 -34.43 16 8 N -0.57 -28.90 5.29 -306.97 -1.62 -30.52 16 9 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 10 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 12 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 13 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.16 3.43 2.63 44.99 0.12 3.54 16 18 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 19 C -0.16 -3.58 8.86 71.98 0.64 -2.94 16 20 N -0.71 -9.67 4.99 -442.53 -2.21 -11.88 16 21 C 0.51 9.17 7.79 87.66 0.68 9.85 16 22 O -0.58 -17.56 15.70 -3.04 -0.05 -17.61 16 23 C -0.06 -0.54 5.88 29.10 0.17 -0.36 16 24 C -0.01 -0.19 5.45 40.95 0.22 0.04 16 25 C -0.04 -1.04 11.79 83.52 0.98 -0.05 16 26 N -0.54 -13.79 11.25 -200.31 -2.25 -16.04 16 27 C 0.18 3.19 12.56 180.26 2.26 5.45 16 28 N -0.46 -6.93 3.15 -537.87 -1.70 -8.62 16 29 C 0.06 0.39 10.83 127.77 1.38 1.78 16 30 H 0.09 0.56 6.29 -2.38 -0.02 0.54 16 31 H 0.06 0.89 6.55 -2.39 -0.02 0.88 16 32 H 0.06 0.86 7.45 -2.38 -0.02 0.84 16 33 H 0.35 10.69 7.39 -89.69 -0.66 10.03 16 34 H 0.10 2.95 8.06 -2.39 -0.02 2.93 16 35 H 0.07 1.93 7.44 -2.39 -0.02 1.91 16 36 H 0.40 18.83 7.90 -92.72 -0.73 18.09 16 37 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.62 7.13 -2.39 -0.02 1.60 16 40 H 0.08 1.36 6.56 -2.39 -0.02 1.35 16 41 H 0.42 2.41 6.58 -92.71 -0.61 1.80 16 42 H 0.13 0.37 7.63 -2.39 -0.02 0.36 16 43 H 0.15 0.58 8.14 -2.38 -0.02 0.57 16 44 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 45 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.08 0.54 7.67 -2.38 -0.02 0.52 16 Total: -1.00 -85.76 397.56 0.54 -85.22 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.99 Total: 37.26 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 9.69 Total: 22.70 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -10.09 Total: -137.98 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.10 Total: -52.03 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -85.76 0.54 -85.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.782 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds