Wall clock time and date at job start Tue Mar 31 2020 19:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47158 * 2 1 4 4 N 1.46897 * 109.47001 * 120.00287 * 2 1 3 5 5 C 1.46901 * 111.00176 * 274.99802 * 4 2 1 6 6 C 1.50702 * 109.47110 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00305 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99430 * 180.02562 * 6 5 4 9 9 C 1.37098 * 119.99695 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99934 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00394 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99592 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47075 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47129 * 120.00019 * 13 11 9 16 16 H 1.48506 * 109.47036 * 239.99736 * 13 11 9 17 17 C 1.53003 * 109.47312 * 240.00246 * 2 1 3 18 18 H 1.09000 * 109.46903 * 300.00370 * 17 2 1 19 19 C 1.52997 * 109.47312 * 180.02562 * 17 2 1 20 20 N 1.46503 * 109.47029 * 59.99724 * 17 2 1 21 21 C 1.34769 * 120.00207 * 205.00259 * 20 17 2 22 22 O 1.21283 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50698 * 120.00252 * 180.02562 * 21 20 17 24 24 C 1.50697 * 109.47436 * 180.02562 * 23 21 20 25 25 C 1.34669 * 126.59585 * 85.16051 * 24 23 21 26 26 N 1.34133 * 108.02235 * 180.28483 * 25 24 23 27 27 C 1.30502 * 109.25197 * 359.73051 * 26 25 24 28 28 N 1.35041 * 108.70384 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.39764 * 180.02562 * 28 27 26 30 30 H 1.08998 * 109.47581 * 299.99428 * 1 2 3 31 31 H 1.09001 * 109.47149 * 59.99940 * 1 2 3 32 32 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00282 * 38.95657 * 4 2 1 34 34 H 1.08998 * 109.47150 * 300.00721 * 5 4 2 35 35 H 1.09004 * 109.46579 * 60.00277 * 5 4 2 36 36 H 0.96999 * 120.00429 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99766 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47103 * 180.02562 * 19 17 2 39 39 H 1.09008 * 109.46839 * 300.00094 * 19 17 2 40 40 H 1.09001 * 109.47149 * 59.99814 * 19 17 2 41 41 H 0.97003 * 119.99968 * 25.00248 * 20 17 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 23 21 20 43 43 H 1.09007 * 109.47124 * 299.99518 * 23 21 20 44 44 H 1.07993 * 125.98713 * 0.05405 * 25 24 23 45 45 H 1.07998 * 125.64430 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.47391 * 90.01916 * 29 28 27 47 47 H 1.09001 * 109.46813 * 330.01972 * 29 28 27 48 48 H 1.09004 * 109.47041 * 210.02099 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8687 -1.6987 3.4699 8 7 2.7286 0.1203 4.7323 9 6 3.1885 -0.5568 5.8322 10 1 3.4388 -1.6046 5.7555 11 6 3.3335 0.1052 7.0452 12 7 3.0294 1.3803 7.1383 13 14 3.9607 -0.8172 8.5436 14 1 4.2291 -2.2312 8.1778 15 1 5.2142 -0.1837 9.0259 16 1 2.9369 -0.7701 9.6183 17 6 2.0400 -0.7212 -1.2493 18 1 1.6766 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4229 -0.7028 -3.6064 22 8 1.7118 -1.8795 -3.6611 23 6 0.9211 0.0077 -4.8369 24 6 0.8696 -0.9607 -5.9904 25 6 -0.1387 -1.8024 -6.2877 26 7 0.2082 -2.4952 -7.3826 27 6 1.3908 -2.1107 -7.7784 28 7 1.8379 -1.1520 -6.9389 29 6 3.1215 -0.4511 -7.0246 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4495 -1.4981 1.4099 34 1 2.7587 1.0461 2.1182 35 1 1.0870 0.6161 2.5525 36 1 2.5041 1.0615 4.8011 37 1 3.1302 1.8424 7.9852 38 1 3.9333 -1.2352 -2.1392 39 1 3.9337 0.3059 -1.2487 40 1 3.9330 -1.2359 -0.3590 41 1 1.3209 0.9106 -2.4018 42 1 1.5939 0.8296 -5.0818 43 1 -0.0781 0.4002 -4.6478 44 1 -1.0629 -1.9045 -5.7384 45 1 1.9239 -2.4960 -8.6349 46 1 3.0071 0.4430 -7.6374 47 1 3.8648 -1.1083 -7.4759 48 1 3.4476 -0.1667 -6.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329169040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:08 Heat of formation + Delta-G solvation = -11.401091 kcal Electronic energy + Delta-G solvation = -28485.938212 eV Core-core repulsion = 24383.971362 eV Total energy + Delta-G solvation = -4101.966850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.37901 -40.02125 -38.47710 -37.23768 -34.55011 -34.36075 -33.83245 -32.69430 -31.28869 -30.64174 -29.62279 -27.45441 -27.20935 -26.31005 -24.25936 -23.42277 -21.73141 -21.28002 -20.77068 -19.98923 -19.29590 -17.94741 -17.54452 -17.35907 -16.39912 -16.03873 -15.78554 -15.63322 -15.27020 -14.65319 -14.55625 -14.45547 -14.05874 -13.89807 -13.83411 -13.81738 -13.52573 -13.34959 -13.20861 -13.10470 -12.96670 -12.60777 -12.38089 -12.21273 -12.08474 -11.62541 -11.58321 -11.48668 -11.31118 -11.07257 -10.72823 -10.35729 -10.24490 -10.22063 -10.12025 -9.81785 -9.54095 -9.28038 -8.60844 -8.49459 -8.09625 -7.98139 -6.44066 -3.84745 1.67775 2.39126 2.47191 2.83894 3.08840 3.14954 3.25847 3.33338 3.88261 4.09478 4.15159 4.28970 4.33775 4.45338 4.50095 4.60593 4.64980 4.71987 4.85432 4.89438 4.97340 5.09107 5.15032 5.15383 5.24245 5.41333 5.46941 5.48638 5.61443 5.65661 5.78932 5.85898 5.95961 6.01717 6.02619 6.05067 6.21476 6.33067 6.47292 6.52118 6.89276 7.13381 7.28223 7.53594 7.58465 7.82767 8.02529 8.04370 8.58784 9.16003 9.51897 10.03210 10.73701 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.001665 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.240441 B =16816.428755 C =16922.778227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.081 0.919 4 N -0.658 5.658 5 C 0.053 3.947 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.154 3.846 18 H 0.089 0.911 19 C -0.151 4.151 20 N -0.724 5.724 21 C 0.511 3.489 22 O -0.524 6.524 23 C -0.065 4.065 24 C -0.009 4.009 25 C -0.008 4.008 26 N -0.494 5.494 27 C 0.183 3.817 28 N -0.455 5.455 29 C 0.071 3.929 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.397 0.603 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.167 0.833 45 H 0.204 0.796 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 5.858 -27.135 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.099 0.901 4 N -0.291 5.291 5 C -0.080 4.080 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.208 1.208 17 C 0.049 3.951 18 H 0.107 0.893 19 C -0.210 4.210 20 N -0.377 5.377 21 C 0.295 3.705 22 O -0.399 6.399 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.156 4.156 26 N -0.212 5.212 27 C -0.099 4.099 28 N -0.138 5.138 29 C -0.072 4.072 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.231 0.769 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.184 0.816 45 H 0.221 0.779 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.025 3.855 -27.598 28.029 hybrid contribution -0.300 1.544 1.518 2.186 sum -3.325 5.399 -26.080 26.839 Atomic orbital electron populations 1.22537 0.97040 1.02631 1.02094 1.21748 0.92658 0.98112 0.90842 0.90116 1.60001 1.57649 1.09155 1.02256 1.21689 0.99938 0.95606 0.90752 1.19796 0.85217 0.88253 0.84172 1.90536 1.55209 1.16241 1.84580 1.41866 1.57807 1.12455 1.07944 1.19761 1.39830 0.96492 0.86735 0.87844 1.25263 0.97659 0.95781 0.99265 1.69621 1.48775 1.08871 1.27078 0.85801 0.78240 0.79662 0.80655 1.19200 1.20743 1.20774 1.20879 0.94826 0.97171 0.82199 0.89322 1.22025 0.94353 1.01666 1.02909 1.46071 1.67836 1.13891 1.09888 1.20442 0.78194 0.87564 0.84253 1.90773 1.48706 1.15742 1.84654 1.20029 1.04654 0.96434 0.89498 1.20375 0.91873 1.05063 0.95055 1.21988 1.00084 0.96669 0.96869 1.70277 1.12106 1.25622 1.13147 1.24895 0.93896 0.92494 0.98637 1.45202 1.15288 1.30984 1.22370 1.22040 0.83094 0.97852 1.04200 0.92226 0.92223 0.92145 0.82664 0.89623 0.93769 0.77499 0.91939 0.93340 0.93246 0.89489 0.76907 0.88383 0.86553 0.81609 0.77914 0.90410 0.89211 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.00 37.16 0.33 -1.40 16 2 C 0.08 0.83 2.22 -67.71 -0.15 0.68 16 3 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 4 N -0.66 -9.76 5.11 -107.99 -0.55 -10.31 16 5 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 6 C 0.44 10.09 7.82 -10.99 -0.09 10.01 16 7 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 8 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 9 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 10 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 13 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.15 1.68 2.34 -67.93 -0.16 1.52 16 18 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 19 C -0.15 -1.82 9.33 37.16 0.35 -1.47 16 20 N -0.72 -5.74 4.38 -53.81 -0.24 -5.98 16 21 C 0.51 4.90 7.79 -10.99 -0.09 4.81 16 22 O -0.52 -7.69 15.70 5.56 0.09 -7.61 16 23 C -0.06 -0.40 5.88 -29.04 -0.17 -0.57 16 24 C -0.01 -0.08 5.45 -81.60 -0.44 -0.53 16 25 C -0.01 -0.09 11.79 -17.81 -0.21 -0.30 16 26 N -0.49 -6.09 11.25 -14.67 -0.17 -6.25 16 27 C 0.18 1.68 12.56 -90.37 -1.14 0.54 16 28 N -0.46 -3.73 3.15 -121.36 -0.38 -4.11 16 29 C 0.07 0.30 10.83 59.85 0.65 0.94 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 32 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.35 5.64 8.17 -39.29 -0.32 5.32 16 34 H 0.09 1.28 8.05 -51.93 -0.42 0.87 16 35 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 36 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 41 H 0.40 1.92 8.39 -40.82 -0.34 1.58 16 42 H 0.10 0.36 7.63 -51.93 -0.40 -0.03 16 43 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.36 7.67 -51.93 -0.40 -0.03 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -36.91 404.29 -8.25 -45.16 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.44 Total: 12.98 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.38 Total: 7.17 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.67 Total: -64.23 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.91 -8.25 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.755 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds