Wall clock time and date at job start Tue Mar 31 2020 19:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47158 * 2 1 4 4 N 1.46897 * 109.47001 * 120.00287 * 2 1 3 5 5 C 1.46901 * 111.00176 * 274.99802 * 4 2 1 6 6 C 1.50702 * 109.47110 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00305 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99430 * 180.02562 * 6 5 4 9 9 C 1.37098 * 119.99695 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99934 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00394 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99592 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47075 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47129 * 120.00019 * 13 11 9 16 16 H 1.48506 * 109.47036 * 239.99736 * 13 11 9 17 17 C 1.53003 * 109.47312 * 240.00246 * 2 1 3 18 18 H 1.09000 * 109.46903 * 300.00370 * 17 2 1 19 19 C 1.52997 * 109.47312 * 180.02562 * 17 2 1 20 20 N 1.46503 * 109.47029 * 59.99724 * 17 2 1 21 21 C 1.34769 * 120.00207 * 205.00259 * 20 17 2 22 22 O 1.21283 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50698 * 120.00252 * 180.02562 * 21 20 17 24 24 C 1.50697 * 109.47436 * 180.02562 * 23 21 20 25 25 C 1.34669 * 126.59585 * 85.16051 * 24 23 21 26 26 N 1.34133 * 108.02235 * 180.28483 * 25 24 23 27 27 C 1.30502 * 109.25197 * 359.73051 * 26 25 24 28 28 N 1.35041 * 108.70384 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.39764 * 180.02562 * 28 27 26 30 30 H 1.08998 * 109.47581 * 299.99428 * 1 2 3 31 31 H 1.09001 * 109.47149 * 59.99940 * 1 2 3 32 32 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00282 * 38.95657 * 4 2 1 34 34 H 1.08998 * 109.47150 * 300.00721 * 5 4 2 35 35 H 1.09004 * 109.46579 * 60.00277 * 5 4 2 36 36 H 0.96999 * 120.00429 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99766 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47103 * 180.02562 * 19 17 2 39 39 H 1.09008 * 109.46839 * 300.00094 * 19 17 2 40 40 H 1.09001 * 109.47149 * 59.99814 * 19 17 2 41 41 H 0.97003 * 119.99968 * 25.00248 * 20 17 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 23 21 20 43 43 H 1.09007 * 109.47124 * 299.99518 * 23 21 20 44 44 H 1.07993 * 125.98713 * 0.05405 * 25 24 23 45 45 H 1.07998 * 125.64430 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.47391 * 90.01916 * 29 28 27 47 47 H 1.09001 * 109.46813 * 330.01972 * 29 28 27 48 48 H 1.09004 * 109.47041 * 210.02099 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8687 -1.6987 3.4699 8 7 2.7286 0.1203 4.7323 9 6 3.1885 -0.5568 5.8322 10 1 3.4388 -1.6046 5.7555 11 6 3.3335 0.1052 7.0452 12 7 3.0294 1.3803 7.1383 13 14 3.9607 -0.8172 8.5436 14 1 4.2291 -2.2312 8.1778 15 1 5.2142 -0.1837 9.0259 16 1 2.9369 -0.7701 9.6183 17 6 2.0400 -0.7212 -1.2493 18 1 1.6766 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4229 -0.7028 -3.6064 22 8 1.7118 -1.8795 -3.6611 23 6 0.9211 0.0077 -4.8369 24 6 0.8696 -0.9607 -5.9904 25 6 -0.1387 -1.8024 -6.2877 26 7 0.2082 -2.4952 -7.3826 27 6 1.3908 -2.1107 -7.7784 28 7 1.8379 -1.1520 -6.9389 29 6 3.1215 -0.4511 -7.0246 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4495 -1.4981 1.4099 34 1 2.7587 1.0461 2.1182 35 1 1.0870 0.6161 2.5525 36 1 2.5041 1.0615 4.8011 37 1 3.1302 1.8424 7.9852 38 1 3.9333 -1.2352 -2.1392 39 1 3.9337 0.3059 -1.2487 40 1 3.9330 -1.2359 -0.3590 41 1 1.3209 0.9106 -2.4018 42 1 1.5939 0.8296 -5.0818 43 1 -0.0781 0.4002 -4.6478 44 1 -1.0629 -1.9045 -5.7384 45 1 1.9239 -2.4960 -8.6349 46 1 3.0071 0.4430 -7.6374 47 1 3.8648 -1.1083 -7.4759 48 1 3.4476 -0.1667 -6.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329169040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:07 Heat of formation + Delta-G solvation = -39.463045 kcal Electronic energy + Delta-G solvation = -28487.155070 eV Core-core repulsion = 24383.971362 eV Total energy + Delta-G solvation = -4103.183708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02285 -40.86877 -40.14142 -38.39080 -36.04360 -35.35217 -34.94764 -33.40294 -33.23234 -31.64991 -30.55910 -28.14597 -27.82118 -27.69494 -25.83301 -24.44575 -22.41196 -22.07954 -21.68527 -21.03683 -20.64100 -19.90957 -18.36475 -17.98098 -17.61973 -17.26622 -16.66400 -16.47381 -16.36493 -16.27244 -15.85046 -15.34482 -15.30504 -15.04926 -14.89946 -14.66462 -14.49030 -14.22875 -14.01593 -13.90288 -13.67804 -13.52820 -13.42060 -13.34184 -13.20176 -12.98397 -12.92134 -12.70115 -12.52217 -12.40004 -12.20362 -12.12115 -11.65031 -11.50827 -10.99777 -10.91685 -10.45260 -10.35207 -10.09366 -10.00139 -9.29797 -9.26676 -8.46578 -5.94685 1.02639 1.36435 1.42048 1.55767 1.68298 1.93626 2.07164 2.11156 2.27999 2.35790 3.04548 3.21170 3.57320 3.58615 3.67780 3.90613 3.95720 4.02401 4.07347 4.18876 4.24303 4.33467 4.43886 4.44114 4.49664 4.50637 4.60423 4.61117 4.63930 4.71271 4.83208 4.84774 4.87449 5.00180 5.10634 5.25883 5.38254 5.40319 5.42008 5.57279 5.80458 5.91776 6.12884 6.32199 6.36425 6.61306 6.63886 7.14042 7.14293 7.34804 7.57984 8.13939 8.70891 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.001665 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.240441 B =16816.428755 C =16922.778227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.105 0.895 4 N -0.675 5.675 5 C 0.070 3.930 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.076 0.924 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.990 3.010 14 H -0.276 1.276 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.163 3.837 18 H 0.056 0.944 19 C -0.144 4.144 20 N -0.706 5.706 21 C 0.512 3.488 22 O -0.581 6.581 23 C -0.055 4.055 24 C -0.010 4.010 25 C -0.045 4.045 26 N -0.541 5.541 27 C 0.176 3.824 28 N -0.456 5.456 29 C 0.064 3.936 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.343 0.657 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.418 0.582 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.166 0.834 45 H 0.235 0.765 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 8.778 -27.989 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 H 0.123 0.877 4 N -0.307 5.307 5 C -0.062 4.062 6 C 0.224 3.776 7 O -0.512 6.512 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.094 0.906 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.200 1.200 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.057 3.943 18 H 0.074 0.926 19 C -0.202 4.202 20 N -0.359 5.359 21 C 0.299 3.701 22 O -0.460 6.460 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.193 4.193 26 N -0.260 5.260 27 C -0.106 4.106 28 N -0.138 5.138 29 C -0.077 4.077 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.183 0.817 45 H 0.251 0.749 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.913 6.869 -28.463 29.425 hybrid contribution -0.308 0.612 1.708 1.840 sum -3.221 7.481 -26.756 27.968 Atomic orbital electron populations 1.22477 0.95668 1.02132 1.03477 1.21776 0.93648 0.98556 0.88580 0.87675 1.59963 1.58584 1.09164 1.02965 1.21539 1.01324 0.95157 0.88206 1.20979 0.83339 0.88010 0.85266 1.90508 1.56632 1.18539 1.85491 1.41922 1.58373 1.12636 1.08145 1.19679 1.42063 0.95906 0.88629 0.90554 1.25989 0.97283 0.96621 1.01264 1.69668 1.48692 1.09574 1.28041 0.84906 0.78215 0.77994 0.77431 1.20046 1.19586 1.19593 1.20562 0.94044 0.96084 0.83629 0.92574 1.21916 0.95156 1.02212 1.00911 1.45808 1.66908 1.14693 1.08485 1.21030 0.76977 0.86896 0.85221 1.90767 1.51272 1.18436 1.85534 1.20130 1.07047 0.96004 0.86376 1.20761 0.91400 1.04794 0.95634 1.22226 1.01354 0.98143 0.97589 1.70194 1.14134 1.27261 1.14386 1.25506 0.93386 0.92367 0.99360 1.45474 1.16126 1.30589 1.21610 1.22343 0.81586 0.98850 1.04938 0.92125 0.89477 0.93663 0.83800 0.87284 0.91221 0.76878 0.91321 0.94488 0.91292 0.92359 0.74410 0.84826 0.83587 0.81682 0.74935 0.87877 0.87852 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.00 71.98 0.65 -2.25 16 2 C 0.08 1.61 2.22 44.92 0.10 1.71 16 3 H 0.11 1.56 7.80 -2.39 -0.02 1.54 16 4 N -0.67 -19.48 5.11 -495.58 -2.53 -22.01 16 5 C 0.07 2.18 5.97 85.56 0.51 2.69 16 6 C 0.44 20.16 7.82 87.66 0.69 20.85 16 7 O -0.63 -34.45 15.78 -3.05 -0.05 -34.50 16 8 N -0.57 -28.75 5.29 -306.99 -1.62 -30.37 16 9 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 10 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 11 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 12 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 13 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 C 0.16 3.36 2.34 44.99 0.11 3.47 16 18 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 19 C -0.14 -3.35 9.33 71.98 0.67 -2.68 16 20 N -0.71 -9.29 4.38 -442.54 -1.94 -11.23 16 21 C 0.51 8.91 7.79 87.66 0.68 9.60 16 22 O -0.58 -17.19 15.70 -3.04 -0.05 -17.24 16 23 C -0.06 -0.52 5.88 29.10 0.17 -0.35 16 24 C -0.01 -0.17 5.45 40.95 0.22 0.05 16 25 C -0.05 -1.04 11.79 83.52 0.98 -0.06 16 26 N -0.54 -13.69 11.25 -200.31 -2.25 -15.94 16 27 C 0.18 3.13 12.56 180.26 2.26 5.40 16 28 N -0.46 -6.75 3.15 -537.88 -1.70 -8.45 16 29 C 0.06 0.36 10.83 127.77 1.38 1.75 16 30 H 0.06 1.00 7.45 -2.39 -0.02 0.99 16 31 H 0.09 0.93 7.45 -2.39 -0.02 0.92 16 32 H 0.04 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.34 11.11 8.17 -89.69 -0.73 10.38 16 34 H 0.11 2.94 8.05 -2.39 -0.02 2.92 16 35 H 0.07 1.86 7.44 -2.39 -0.02 1.84 16 36 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 37 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 40 H 0.06 1.71 7.60 -2.39 -0.02 1.69 16 41 H 0.42 2.16 8.39 -92.71 -0.78 1.38 16 42 H 0.13 0.34 7.63 -2.39 -0.02 0.33 16 43 H 0.15 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.23 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.08 0.49 7.67 -2.38 -0.02 0.48 16 Total: -1.00 -85.33 404.29 0.64 -84.69 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -1.24 Total: 36.68 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 9.71 Total: 22.03 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -9.76 Total: -136.47 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.10 Total: -51.74 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -85.33 0.64 -84.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.230 kcal (2) G-P(sol) polarization free energy of solvation -85.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds