Wall clock time and date at job start Tue Mar 31 2020 19:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 N 1.46503 * 109.46836 * 119.99683 * 2 1 3 5 5 C 1.34769 * 120.00207 * 275.00165 * 4 2 1 6 6 O 1.21283 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00252 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47436 * 180.02562 * 7 5 4 9 9 C 1.34669 * 126.59585 * 85.16051 * 8 7 5 10 10 N 1.34133 * 108.02235 * 180.28483 * 9 8 7 11 11 C 1.30502 * 109.25197 * 359.73051 * 10 9 8 12 12 N 1.35041 * 108.70384 * 0.02562 * 11 10 9 13 13 C 1.46499 * 126.39764 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47023 * 239.99506 * 2 1 3 15 15 H 1.08997 * 109.47474 * 300.00401 * 14 2 1 16 16 C 1.52999 * 109.46725 * 180.02562 * 14 2 1 17 17 N 1.46895 * 109.46809 * 60.00524 * 14 2 1 18 18 C 1.46908 * 110.99864 * 204.99752 * 17 14 2 19 19 C 1.50702 * 109.47066 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00091 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99430 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99407 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00463 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00008 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00179 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47120 * 89.99836 * 26 24 22 28 28 H 1.48498 * 109.47098 * 209.99795 * 26 24 22 29 29 H 1.48496 * 109.47150 * 329.99632 * 26 24 22 30 30 H 1.08998 * 109.46874 * 300.00158 * 1 2 3 31 31 H 1.09001 * 109.46971 * 60.00419 * 1 2 3 32 32 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99968 * 95.00155 * 4 2 1 34 34 H 1.08994 * 109.47477 * 59.99406 * 7 5 4 35 35 H 1.09007 * 109.47124 * 299.99518 * 7 5 4 36 36 H 1.07993 * 125.98713 * 0.05405 * 9 8 7 37 37 H 1.07998 * 125.64430 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47391 * 90.01916 * 13 12 11 39 39 H 1.09001 * 109.46813 * 330.01972 * 13 12 11 40 40 H 1.09004 * 109.47041 * 210.02099 * 13 12 11 41 41 H 1.09004 * 109.47130 * 180.02562 * 16 14 2 42 42 H 1.09002 * 109.46981 * 300.00092 * 16 14 2 43 43 H 1.08997 * 109.47594 * 60.00404 * 16 14 2 44 44 H 1.00899 * 111.00412 * 81.04095 * 17 14 2 45 45 H 1.09001 * 109.46490 * 300.00001 * 18 17 14 46 46 H 1.08995 * 109.46616 * 59.99692 * 18 17 14 47 47 H 0.96999 * 120.00429 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99766 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1586 2.4116 7 6 2.6498 -0.7284 3.5875 8 6 2.6997 0.2397 4.7413 9 6 1.6834 0.5608 5.5645 10 7 2.1360 1.4593 6.4516 11 6 3.3957 1.7028 6.2130 12 7 3.7876 0.9598 5.1556 13 6 5.1259 0.9331 4.5602 14 6 2.0400 -0.7214 -1.2492 15 1 1.6767 -1.7490 -1.2492 16 6 3.5700 -0.7219 -1.2488 17 7 1.5504 -0.0289 -2.4486 18 6 1.4876 -0.9440 -3.5961 19 6 0.9816 -0.1999 -4.8050 20 8 0.7005 0.9768 -4.7190 21 7 0.8405 -0.8423 -5.9813 22 6 0.3807 -0.1653 -7.0811 23 1 0.1312 0.8827 -7.0049 24 6 0.2347 -0.8276 -8.2939 25 7 0.5379 -2.1030 -8.3866 26 14 -0.3911 0.0950 -9.7927 27 1 0.7583 0.6760 -10.5320 28 1 -1.1271 -0.8419 -10.6791 29 1 -1.3021 1.1844 -9.3586 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.6490 -1.1203 3.3980 35 1 1.9775 -1.5507 3.8327 36 1 0.6790 0.1670 5.5162 37 1 4.0209 2.3860 6.7686 38 1 5.7250 0.1637 5.0472 39 1 5.6027 1.9041 4.6945 40 1 5.0457 0.7118 3.4959 41 1 3.9334 -1.2354 -2.1390 42 1 3.9337 0.3057 -1.2486 43 1 3.9330 -1.2359 -0.3589 44 1 2.1205 0.7766 -2.6592 45 1 2.4831 -1.3377 -3.8016 46 1 0.8113 -1.7675 -3.3673 47 1 1.0650 -1.7835 -6.0499 48 1 0.4363 -2.5653 -9.2333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329169044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:13 Heat of formation + Delta-G solvation = -11.300349 kcal Electronic energy + Delta-G solvation = -28504.882894 eV Core-core repulsion = 24402.920412 eV Total energy + Delta-G solvation = -4101.962481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37931 -40.02135 -38.48154 -37.24266 -34.55244 -34.36325 -33.83486 -32.69191 -31.29200 -30.64182 -29.62983 -27.45331 -27.20903 -26.31985 -24.26301 -23.42219 -21.72911 -21.28665 -20.77274 -19.99064 -19.29913 -17.95115 -17.54928 -17.36257 -16.40184 -16.03680 -15.76373 -15.62763 -15.28166 -14.72080 -14.61323 -14.37740 -14.05652 -13.90006 -13.86907 -13.80029 -13.51714 -13.32822 -13.22041 -13.11216 -12.96478 -12.63184 -12.38888 -12.22466 -12.06762 -11.62090 -11.57985 -11.49332 -11.31057 -11.05642 -10.72840 -10.40925 -10.24025 -10.22116 -10.11739 -9.81808 -9.53225 -9.27681 -8.60792 -8.49929 -8.10359 -7.98448 -6.44183 -3.84906 1.67734 2.39154 2.46994 2.83925 3.08873 3.16303 3.25300 3.31563 3.87899 4.09094 4.15112 4.28347 4.32970 4.45251 4.49676 4.59601 4.64367 4.72386 4.85419 4.87340 4.96810 5.07215 5.14081 5.15795 5.23716 5.39846 5.46120 5.49030 5.60170 5.64467 5.77792 5.88178 5.94954 5.99834 6.02428 6.06088 6.21538 6.35723 6.47425 6.55089 6.89197 7.12471 7.28266 7.53192 7.57386 7.82800 8.02612 8.03871 8.58558 9.15666 9.51565 10.02931 10.73481 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035087 B = 0.001676 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.832984 B =16699.823594 C =16874.814545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.087 0.913 4 N -0.725 5.725 5 C 0.511 3.489 6 O -0.524 6.524 7 C -0.065 4.065 8 C -0.009 4.009 9 C -0.007 4.007 10 N -0.494 5.494 11 C 0.183 3.817 12 N -0.455 5.455 13 C 0.071 3.929 14 C 0.078 3.922 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.658 5.658 18 C 0.053 3.947 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.167 0.833 37 H 0.204 0.796 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.312 -3.939 25.148 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.105 0.895 4 N -0.377 5.377 5 C 0.295 3.705 6 O -0.399 6.399 7 C -0.106 4.106 8 C -0.124 4.124 9 C -0.156 4.156 10 N -0.211 5.211 11 C -0.099 4.099 12 N -0.139 5.139 13 C -0.072 4.072 14 C -0.034 4.034 15 H 0.100 0.900 16 C -0.242 4.242 17 N -0.290 5.290 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.231 0.769 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.184 0.816 37 H 0.221 0.779 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.173 0.827 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.905 -2.110 25.777 27.695 hybrid contribution 1.525 -1.217 -1.832 2.676 sum 11.430 -3.327 23.945 26.741 Atomic orbital electron populations 1.22033 0.94191 1.01810 1.03041 1.20876 0.95010 0.96997 0.82128 0.89461 1.46075 1.67849 1.13898 1.09875 1.20441 0.78274 0.87568 0.84172 1.90773 1.48742 1.15821 1.84546 1.20030 1.03991 0.96848 0.89740 1.20375 0.88664 1.02386 1.00951 1.21994 0.98887 0.99696 0.95003 1.70278 1.08473 1.16142 1.26250 1.24895 0.93480 0.99910 0.91639 1.45201 1.10033 1.33156 1.25476 1.22036 0.81148 1.04226 0.99759 1.21755 0.92519 0.98213 0.90899 0.90042 1.22535 0.97208 1.02466 1.02029 1.59994 1.57618 1.09127 1.02252 1.21692 0.99917 0.95622 0.90749 1.19793 0.85258 0.88253 0.84170 1.90537 1.55219 1.16267 1.84568 1.41857 1.57770 1.12433 1.07957 1.19710 1.39970 0.96450 0.86762 0.87900 1.25263 0.97639 0.95770 0.99264 1.69612 1.48728 1.08831 1.27162 0.85854 0.78882 0.78987 0.80560 1.20440 1.20915 1.19382 0.93067 0.89540 0.93153 0.76909 0.88434 0.86506 0.81585 0.77917 0.90414 0.89215 0.89881 0.92215 0.92279 0.92341 0.82727 0.93816 0.89574 0.77494 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.33 37.16 0.35 -1.54 16 2 C 0.15 1.69 2.34 -67.93 -0.16 1.53 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 N -0.72 -5.75 4.38 -53.80 -0.24 -5.99 16 5 C 0.51 4.90 7.79 -10.99 -0.09 4.82 16 6 O -0.52 -7.70 15.70 5.56 0.09 -7.61 16 7 C -0.06 -0.40 5.88 -29.04 -0.17 -0.57 16 8 C -0.01 -0.09 5.45 -81.60 -0.44 -0.53 16 9 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 10 N -0.49 -6.09 11.25 -14.67 -0.17 -6.25 16 11 C 0.18 1.68 12.56 -90.37 -1.14 0.54 16 12 N -0.46 -3.72 3.15 -121.36 -0.38 -4.10 16 13 C 0.07 0.29 10.83 59.85 0.65 0.94 16 14 C 0.08 0.82 2.22 -67.71 -0.15 0.67 16 15 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 16 C -0.18 -1.66 9.01 37.16 0.33 -1.32 16 17 N -0.66 -9.71 5.11 -107.99 -0.55 -10.26 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.84 16 19 C 0.44 10.07 7.82 -10.99 -0.09 9.99 16 20 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 21 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.27 7.60 -51.93 -0.39 0.87 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 1.93 8.39 -40.82 -0.34 1.59 16 34 H 0.10 0.35 7.63 -51.93 -0.40 -0.04 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.35 7.67 -51.93 -0.40 -0.04 16 41 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 42 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.06 0.40 7.44 -51.93 -0.39 0.02 16 44 H 0.35 5.58 8.18 -39.29 -0.32 5.26 16 45 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 46 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -36.86 404.29 -8.25 -45.12 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -7.44 Total: 12.93 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.38 Total: 7.15 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.67 Total: -64.12 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.86 -8.25 -45.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.816 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds