Wall clock time and date at job start Tue Mar 31 2020 19:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 N 1.46503 * 109.46836 * 119.99683 * 2 1 3 5 5 C 1.34769 * 120.00207 * 275.00165 * 4 2 1 6 6 O 1.21283 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00252 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47436 * 180.02562 * 7 5 4 9 9 C 1.34669 * 126.59585 * 85.16051 * 8 7 5 10 10 N 1.34133 * 108.02235 * 180.28483 * 9 8 7 11 11 C 1.30502 * 109.25197 * 359.73051 * 10 9 8 12 12 N 1.35041 * 108.70384 * 0.02562 * 11 10 9 13 13 C 1.46499 * 126.39764 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47023 * 239.99506 * 2 1 3 15 15 H 1.08997 * 109.47474 * 300.00401 * 14 2 1 16 16 C 1.52999 * 109.46725 * 180.02562 * 14 2 1 17 17 N 1.46895 * 109.46809 * 60.00524 * 14 2 1 18 18 C 1.46908 * 110.99864 * 204.99752 * 17 14 2 19 19 C 1.50702 * 109.47066 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00091 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99430 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99407 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00463 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00008 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00179 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47120 * 89.99836 * 26 24 22 28 28 H 1.48498 * 109.47098 * 209.99795 * 26 24 22 29 29 H 1.48496 * 109.47150 * 329.99632 * 26 24 22 30 30 H 1.08998 * 109.46874 * 300.00158 * 1 2 3 31 31 H 1.09001 * 109.46971 * 60.00419 * 1 2 3 32 32 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99968 * 95.00155 * 4 2 1 34 34 H 1.08994 * 109.47477 * 59.99406 * 7 5 4 35 35 H 1.09007 * 109.47124 * 299.99518 * 7 5 4 36 36 H 1.07993 * 125.98713 * 0.05405 * 9 8 7 37 37 H 1.07998 * 125.64430 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47391 * 90.01916 * 13 12 11 39 39 H 1.09001 * 109.46813 * 330.01972 * 13 12 11 40 40 H 1.09004 * 109.47041 * 210.02099 * 13 12 11 41 41 H 1.09004 * 109.47130 * 180.02562 * 16 14 2 42 42 H 1.09002 * 109.46981 * 300.00092 * 16 14 2 43 43 H 1.08997 * 109.47594 * 60.00404 * 16 14 2 44 44 H 1.00899 * 111.00412 * 81.04095 * 17 14 2 45 45 H 1.09001 * 109.46490 * 300.00001 * 18 17 14 46 46 H 1.08995 * 109.46616 * 59.99692 * 18 17 14 47 47 H 0.96999 * 120.00429 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99766 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1586 2.4116 7 6 2.6498 -0.7284 3.5875 8 6 2.6997 0.2397 4.7413 9 6 1.6834 0.5608 5.5645 10 7 2.1360 1.4593 6.4516 11 6 3.3957 1.7028 6.2130 12 7 3.7876 0.9598 5.1556 13 6 5.1259 0.9331 4.5602 14 6 2.0400 -0.7214 -1.2492 15 1 1.6767 -1.7490 -1.2492 16 6 3.5700 -0.7219 -1.2488 17 7 1.5504 -0.0289 -2.4486 18 6 1.4876 -0.9440 -3.5961 19 6 0.9816 -0.1999 -4.8050 20 8 0.7005 0.9768 -4.7190 21 7 0.8405 -0.8423 -5.9813 22 6 0.3807 -0.1653 -7.0811 23 1 0.1312 0.8827 -7.0049 24 6 0.2347 -0.8276 -8.2939 25 7 0.5379 -2.1030 -8.3866 26 14 -0.3911 0.0950 -9.7927 27 1 0.7583 0.6760 -10.5320 28 1 -1.1271 -0.8419 -10.6791 29 1 -1.3021 1.1844 -9.3586 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.6490 -1.1203 3.3980 35 1 1.9775 -1.5507 3.8327 36 1 0.6790 0.1670 5.5162 37 1 4.0209 2.3860 6.7686 38 1 5.7250 0.1637 5.0472 39 1 5.6027 1.9041 4.6945 40 1 5.0457 0.7118 3.4959 41 1 3.9334 -1.2354 -2.1390 42 1 3.9337 0.3057 -1.2486 43 1 3.9330 -1.2359 -0.3589 44 1 2.1205 0.7766 -2.6592 45 1 2.4831 -1.3377 -3.8016 46 1 0.8113 -1.7675 -3.3673 47 1 1.0650 -1.7835 -6.0499 48 1 0.4363 -2.5653 -9.2333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329169044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:12 Heat of formation + Delta-G solvation = -39.345217 kcal Electronic energy + Delta-G solvation = -28506.099010 eV Core-core repulsion = 24402.920412 eV Total energy + Delta-G solvation = -4103.178598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.02297 -40.86945 -40.13988 -38.39192 -36.04234 -35.35219 -34.94858 -33.40154 -33.23132 -31.65038 -30.55966 -28.14372 -27.82083 -27.69466 -25.83270 -24.44813 -22.41024 -22.08022 -21.68791 -21.03633 -20.64058 -19.90875 -18.36816 -17.98643 -17.61526 -17.26350 -16.67410 -16.40266 -16.36646 -16.31504 -15.84989 -15.41865 -15.21370 -15.12607 -14.89678 -14.58739 -14.53158 -14.22582 -14.01860 -13.88807 -13.67926 -13.52301 -13.37751 -13.33525 -13.26951 -12.98140 -12.90532 -12.70193 -12.52250 -12.41223 -12.20210 -12.12602 -11.65149 -11.50125 -10.99911 -10.91498 -10.45217 -10.35035 -10.09477 -10.00186 -9.29787 -9.26364 -8.46361 -5.94511 1.02588 1.37840 1.42011 1.54302 1.68274 1.93466 2.07269 2.11155 2.27990 2.35750 3.04680 3.21352 3.57360 3.58632 3.67782 3.90560 3.95633 4.01511 4.08610 4.18241 4.24270 4.33383 4.43916 4.44133 4.49232 4.50695 4.58916 4.62495 4.64350 4.71279 4.83238 4.84861 4.88158 5.00055 5.10529 5.25178 5.39303 5.40074 5.41854 5.57146 5.80397 5.91691 6.12802 6.32279 6.37379 6.61394 6.63881 7.13997 7.14300 7.34762 7.58031 8.13990 8.70841 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035087 B = 0.001676 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.832984 B =16699.823594 C =16874.814545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.164 3.836 3 H 0.058 0.942 4 N -0.706 5.706 5 C 0.512 3.488 6 O -0.581 6.581 7 C -0.055 4.055 8 C -0.010 4.010 9 C -0.046 4.046 10 N -0.541 5.541 11 C 0.176 3.824 12 N -0.456 5.456 13 C 0.064 3.936 14 C 0.084 3.916 15 H 0.104 0.896 16 C -0.177 4.177 17 N -0.675 5.675 18 C 0.070 3.930 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.918 5.918 26 Si 0.990 3.010 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.276 1.276 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.235 0.765 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.343 0.657 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 -6.309 25.490 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.058 3.942 3 H 0.076 0.924 4 N -0.359 5.359 5 C 0.299 3.701 6 O -0.460 6.460 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.194 4.194 10 N -0.260 5.260 11 C -0.106 4.106 12 N -0.138 5.138 13 C -0.077 4.077 14 C -0.026 4.026 15 H 0.122 0.878 16 C -0.236 4.236 17 N -0.307 5.307 18 C -0.062 4.062 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.559 5.559 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.162 0.838 45 H 0.089 0.911 46 H 0.126 0.874 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.903 -4.563 26.123 29.068 hybrid contribution 0.928 -0.442 -1.871 2.135 sum 12.832 -5.005 24.253 27.891 Atomic orbital electron populations 1.21938 0.95436 1.02185 1.00903 1.20553 0.93883 0.96107 0.83644 0.92416 1.45811 1.66900 1.14708 1.08481 1.21031 0.77087 0.86900 0.85106 1.90767 1.51289 1.18544 1.85404 1.20130 1.06594 0.96210 0.86619 1.20757 0.88451 1.02362 1.00994 1.22226 0.99834 1.00916 0.96377 1.70194 1.10420 1.17528 1.27838 1.25506 0.93064 1.00006 0.92037 1.45472 1.11158 1.32166 1.24990 1.22345 0.79442 1.06065 0.99871 1.21775 0.93803 0.98503 0.88518 0.87811 1.22465 0.95466 1.02167 1.03489 1.59945 1.58649 1.09181 1.02961 1.21535 1.01333 0.95137 0.88196 1.20981 0.83372 0.88013 0.85262 1.90508 1.56633 1.18562 1.85478 1.41916 1.58346 1.12615 1.08165 1.19642 1.42174 0.95898 0.88647 0.90544 1.25989 0.97269 0.96612 1.01268 1.69662 1.48661 1.09533 1.28079 0.84964 0.78417 0.77836 0.77346 1.19642 1.19498 1.20048 0.94582 0.92320 0.91410 0.74410 0.84720 0.83684 0.81732 0.74930 0.87886 0.87873 0.89704 0.92138 0.93529 0.89412 0.83760 0.91138 0.87397 0.76879 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.33 71.98 0.67 -2.91 16 2 C 0.16 3.39 2.34 44.99 0.11 3.50 16 3 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 4 N -0.71 -9.29 4.38 -442.53 -1.94 -11.23 16 5 C 0.51 8.91 7.79 87.66 0.68 9.59 16 6 O -0.58 -17.18 15.70 -3.04 -0.05 -17.23 16 7 C -0.05 -0.52 5.88 29.10 0.17 -0.34 16 8 C -0.01 -0.17 5.45 40.95 0.22 0.06 16 9 C -0.05 -1.06 11.79 83.52 0.98 -0.07 16 10 N -0.54 -13.71 11.25 -200.31 -2.25 -15.97 16 11 C 0.18 3.13 12.56 180.26 2.26 5.39 16 12 N -0.46 -6.70 3.15 -537.88 -1.70 -8.39 16 13 C 0.06 0.35 10.83 127.77 1.38 1.73 16 14 C 0.08 1.58 2.22 44.92 0.10 1.68 16 15 H 0.10 1.54 7.80 -2.39 -0.02 1.53 16 16 C -0.18 -2.64 9.01 71.98 0.65 -2.00 16 17 N -0.68 -19.33 5.11 -495.57 -2.53 -21.86 16 18 C 0.07 2.18 5.97 85.56 0.51 2.69 16 19 C 0.44 20.10 7.82 87.66 0.69 20.78 16 20 O -0.63 -34.37 15.78 -3.07 -0.05 -34.41 16 21 N -0.57 -28.68 5.29 -306.98 -1.62 -30.31 16 22 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.69 13.05 21.67 0.28 -48.41 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.77 7.60 -2.39 -0.02 1.75 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.42 2.16 8.39 -92.71 -0.78 1.38 16 34 H 0.13 0.30 7.63 -2.39 -0.02 0.28 16 35 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.23 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.08 0.46 7.67 -2.38 -0.02 0.44 16 41 H 0.06 0.93 7.45 -2.39 -0.02 0.92 16 42 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 43 H 0.09 0.80 7.44 -2.39 -0.02 0.78 16 44 H 0.34 10.92 8.18 -89.69 -0.73 10.18 16 45 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 46 H 0.11 2.93 8.05 -2.39 -0.02 2.91 16 47 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 48 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -85.35 404.29 0.64 -84.71 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -1.24 Total: 36.42 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 9.71 Total: 21.93 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -9.76 Total: -136.17 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.10 Total: -51.65 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -85.35 0.64 -84.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329169044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.364 kcal (2) G-P(sol) polarization free energy of solvation -85.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds