Wall clock time and date at job start Tue Mar 31 2020 19:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 15 15 C 1.53002 * 109.47278 * 295.00291 * 13 2 1 16 16 N 1.46504 * 109.46891 * 55.00168 * 13 2 1 17 17 C 1.34778 * 119.99969 * 155.00644 * 16 13 2 18 18 O 1.21600 * 119.99967 * 359.97438 * 17 16 13 19 19 C 1.47524 * 119.99927 * 179.97438 * 17 16 13 20 20 C 1.36597 * 125.76878 * 179.70805 * 19 17 16 21 21 N 1.34816 * 106.83795 * 179.89695 * 20 19 17 22 22 C 1.46504 * 126.59650 * 180.10817 * 21 20 19 23 23 C 1.53173 * 109.53926 * 35.09888 * 22 21 20 24 24 C 1.53108 * 109.15613 * 183.24178 * 23 22 21 25 25 O 1.42899 * 109.48616 * 57.47549 * 24 23 22 26 26 C 1.42911 * 114.09854 * 298.88927 * 25 24 23 27 27 C 1.53085 * 109.41326 * 61.15860 * 26 25 24 28 28 N 1.40215 * 106.81068 * 0.36244 * 21 20 19 29 29 N 1.28758 * 108.36518 * 359.76996 * 28 21 20 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47334 * 179.97438 * 15 13 2 36 36 H 1.09000 * 109.46593 * 299.99796 * 15 13 2 37 37 H 1.08998 * 109.46891 * 59.99794 * 15 13 2 38 38 H 0.97003 * 120.00180 * 334.99404 * 16 13 2 39 39 H 1.07993 * 126.58389 * 0.04572 * 20 19 17 40 40 H 1.08997 * 109.54215 * 155.27592 * 22 21 20 41 41 H 1.08997 * 109.53002 * 303.05732 * 23 22 21 42 42 H 1.09002 * 109.52478 * 63.25103 * 23 22 21 43 43 H 1.09002 * 109.40518 * 297.49547 * 24 23 22 44 44 H 1.09002 * 109.48471 * 177.50682 * 24 23 22 45 45 H 1.09001 * 109.47620 * 301.17801 * 26 25 24 46 46 H 1.08994 * 109.48100 * 181.14397 * 26 25 24 47 47 H 1.09000 * 109.52561 * 182.48907 * 27 26 25 48 48 H 1.08999 * 109.57411 * 62.32478 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 3.1264 -0.6443 -1.2951 15 6 1.6353 -2.1955 -1.1879 16 7 1.4559 -0.1036 -2.4423 17 6 2.0913 -0.1939 -3.6275 18 8 3.1496 -0.7875 -3.7063 19 6 1.5028 0.4276 -4.8291 20 6 2.0457 0.4135 -6.0825 21 7 1.1960 1.0870 -6.8837 22 6 1.3571 1.3309 -8.3192 23 6 2.0333 0.1213 -8.9717 24 6 2.2707 0.4178 -10.4549 25 8 3.0643 1.5992 -10.5837 26 6 2.4593 2.7714 -10.0338 27 6 2.2315 2.5703 -8.5334 28 7 0.1312 1.5142 -6.0776 29 7 0.3449 1.1084 -4.8745 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2468 -2.3964 4.2425 35 1 1.9983 -2.7093 -2.0781 36 1 2.0699 -2.6549 -0.3001 37 1 0.5490 -2.2724 -1.1420 38 1 0.6118 0.3701 -2.3794 39 1 2.9757 -0.0504 -6.3759 40 1 0.3795 1.4914 -8.7738 41 1 2.9883 -0.0701 -8.4825 42 1 1.3903 -0.7532 -8.8721 43 1 1.3124 0.5676 -10.9522 44 1 2.7917 -0.4220 -10.9147 45 1 1.5034 2.9518 -10.5257 46 1 3.1161 3.6270 -10.1904 47 1 1.7300 3.4456 -8.1206 48 1 3.1902 2.4303 -8.0341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329170166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:45 Heat of formation + Delta-G solvation = 25.436341 kcal Electronic energy + Delta-G solvation = -28985.280980 eV Core-core repulsion = 24884.911521 eV Total energy + Delta-G solvation = -4100.369459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53503 -40.06517 -39.38980 -36.84185 -35.93738 -33.87619 -32.15710 -32.00771 -31.75230 -30.96270 -29.18303 -28.13751 -26.15781 -24.69655 -24.40054 -23.97820 -22.76425 -22.66564 -20.75452 -20.49346 -19.19646 -18.46560 -17.44091 -16.96471 -16.84330 -16.32723 -15.99668 -15.65141 -15.46706 -15.13094 -14.86400 -14.60907 -14.44800 -14.27558 -14.14447 -13.83161 -13.41289 -13.21732 -12.77092 -12.58394 -12.38842 -12.30526 -12.21163 -11.92319 -11.86806 -11.67033 -11.57395 -11.23702 -11.14844 -10.90434 -10.78279 -10.61711 -10.43743 -10.42308 -10.24216 -10.00925 -9.92134 -9.61468 -9.50411 -8.90078 -8.74554 -6.96582 -5.74851 -3.04011 0.87898 1.60353 1.60736 3.13031 3.25402 3.35485 3.46398 3.50743 3.51658 3.59894 3.80084 3.98214 4.06697 4.13334 4.38287 4.44494 4.53247 4.62200 4.66630 4.76499 4.80913 4.89510 4.96218 5.02034 5.17870 5.24013 5.35045 5.40623 5.52217 5.61443 5.68060 5.72978 5.87981 6.04341 6.13189 6.21610 6.35974 6.42816 6.47067 6.52344 6.69637 6.78684 6.94947 7.13967 7.58449 7.72051 7.84324 8.34595 8.43974 9.54957 10.10579 10.45772 11.47724 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.001890 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.601144 B =14808.113048 C =14919.225739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.159 4.159 16 N -0.701 5.701 17 C 0.600 3.400 18 O -0.541 6.541 19 C -0.094 4.094 20 C 0.092 3.908 21 N -0.359 5.359 22 C 0.152 3.848 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.378 6.378 26 C 0.066 3.934 27 C -0.170 4.170 28 N -0.067 5.067 29 N -0.202 5.202 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.406 0.594 39 H 0.202 0.798 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 6.243 -31.903 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.032 3.968 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.353 5.353 17 C 0.383 3.617 18 O -0.418 6.418 19 C -0.233 4.233 20 C -0.064 4.064 21 N -0.144 5.144 22 C 0.050 3.950 23 C -0.211 4.211 24 C -0.011 4.011 25 O -0.296 6.296 26 C -0.012 4.012 27 C -0.208 4.208 28 N -0.046 5.046 29 N -0.076 5.076 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.219 0.781 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.159 6.686 -31.836 32.795 hybrid contribution 0.322 -0.100 1.030 1.084 sum -3.837 6.586 -30.806 31.735 Atomic orbital electron populations 1.22537 0.99185 1.01313 0.99943 1.20360 0.92285 0.95606 0.86036 0.92966 1.42443 1.78245 1.10772 1.04797 1.19188 1.36783 0.93921 0.87147 0.91169 1.24740 1.02065 0.96005 0.98072 1.69647 1.50743 1.08615 1.29039 0.86255 0.77749 0.78585 0.83501 1.21301 1.21729 1.21287 1.21399 0.99067 0.92949 0.83428 0.89180 1.22149 1.01654 0.95658 1.02305 1.46072 1.25833 1.55660 1.07736 1.16769 0.83866 0.79349 0.81736 1.90812 1.22036 1.43635 1.85271 1.21619 0.96110 1.09896 0.95705 1.23278 0.97335 0.95656 0.90145 1.50637 1.16459 1.37527 1.09751 1.21628 1.01973 0.96736 0.74684 1.22730 1.02790 0.97402 0.98160 1.22571 0.96453 0.88706 0.93323 1.88016 1.45178 1.16592 1.79805 1.22593 0.99267 0.88718 0.90578 1.22718 1.01200 0.97691 0.99224 1.81993 1.07197 1.20453 0.94992 1.74643 1.13332 1.07357 1.12262 0.92804 0.94591 0.92366 0.77776 0.93432 0.93062 0.90372 0.92444 0.75714 0.78135 0.86706 0.89284 0.89086 0.92309 0.87455 0.92291 0.87604 0.89226 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.01 37.16 0.33 -2.68 16 2 C 0.17 3.35 2.93 -67.94 -0.20 3.15 16 3 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 4 N -0.72 -17.84 5.03 -53.43 -0.27 -18.11 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.14 2.43 2.62 -67.93 -0.18 2.26 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 15 C -0.16 -2.77 9.00 37.16 0.33 -2.44 16 16 N -0.70 -10.91 4.99 -54.85 -0.27 -11.18 16 17 C 0.60 9.38 7.78 -12.47 -0.10 9.29 16 18 O -0.54 -9.77 16.53 5.28 0.09 -9.69 16 19 C -0.09 -1.24 6.99 -83.55 -0.58 -1.82 16 20 C 0.09 0.92 10.40 -16.83 -0.18 0.75 16 21 N -0.36 -3.18 3.55 -54.38 -0.19 -3.37 16 22 C 0.15 0.79 3.31 -67.75 -0.22 0.56 16 23 C -0.17 -0.65 5.15 -26.59 -0.14 -0.79 16 24 C 0.07 0.21 6.84 37.21 0.25 0.47 16 25 O -0.38 -2.04 10.77 -35.23 -0.38 -2.42 16 26 C 0.07 0.24 6.84 37.20 0.25 0.49 16 27 C -0.17 -0.78 5.75 -26.59 -0.15 -0.93 16 28 N -0.07 -0.80 13.78 60.35 0.83 0.03 16 29 N -0.20 -2.74 12.04 32.85 0.40 -2.35 16 30 H 0.05 0.96 6.57 -51.93 -0.34 0.62 16 31 H 0.04 0.53 6.29 -51.93 -0.33 0.20 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.39 10.08 5.77 -40.82 -0.24 9.84 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 37 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 38 H 0.41 5.83 6.26 -40.82 -0.26 5.57 16 39 H 0.20 1.50 7.27 -52.49 -0.38 1.12 16 40 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.36 7.08 -51.93 -0.37 0.00 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -33.85 387.99 -6.23 -40.08 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.16 Total: 9.98 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.81 Total: 1.08 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 1.22 Total: -62.33 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.29 Total: -12.10 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.85 -6.23 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.513 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds