Wall clock time and date at job start Tue Mar 31 2020 19:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 15 15 C 1.53002 * 109.47278 * 295.00291 * 13 2 1 16 16 N 1.46504 * 109.46891 * 55.00168 * 13 2 1 17 17 C 1.34778 * 119.99969 * 155.00644 * 16 13 2 18 18 O 1.21600 * 119.99967 * 359.97438 * 17 16 13 19 19 C 1.47524 * 119.99927 * 179.97438 * 17 16 13 20 20 C 1.36597 * 125.76878 * 179.70805 * 19 17 16 21 21 N 1.34816 * 106.83795 * 179.89695 * 20 19 17 22 22 C 1.46504 * 126.59650 * 180.10817 * 21 20 19 23 23 C 1.53173 * 109.53926 * 35.09888 * 22 21 20 24 24 C 1.53108 * 109.15613 * 183.24178 * 23 22 21 25 25 O 1.42899 * 109.48616 * 57.47549 * 24 23 22 26 26 C 1.42911 * 114.09854 * 298.88927 * 25 24 23 27 27 C 1.53085 * 109.41326 * 61.15860 * 26 25 24 28 28 N 1.40215 * 106.81068 * 0.36244 * 21 20 19 29 29 N 1.28758 * 108.36518 * 359.76996 * 28 21 20 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47334 * 179.97438 * 15 13 2 36 36 H 1.09000 * 109.46593 * 299.99796 * 15 13 2 37 37 H 1.08998 * 109.46891 * 59.99794 * 15 13 2 38 38 H 0.97003 * 120.00180 * 334.99404 * 16 13 2 39 39 H 1.07993 * 126.58389 * 0.04572 * 20 19 17 40 40 H 1.08997 * 109.54215 * 155.27592 * 22 21 20 41 41 H 1.08997 * 109.53002 * 303.05732 * 23 22 21 42 42 H 1.09002 * 109.52478 * 63.25103 * 23 22 21 43 43 H 1.09002 * 109.40518 * 297.49547 * 24 23 22 44 44 H 1.09002 * 109.48471 * 177.50682 * 24 23 22 45 45 H 1.09001 * 109.47620 * 301.17801 * 26 25 24 46 46 H 1.08994 * 109.48100 * 181.14397 * 26 25 24 47 47 H 1.09000 * 109.52561 * 182.48907 * 27 26 25 48 48 H 1.08999 * 109.57411 * 62.32478 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 3.1264 -0.6443 -1.2951 15 6 1.6353 -2.1955 -1.1879 16 7 1.4559 -0.1036 -2.4423 17 6 2.0913 -0.1939 -3.6275 18 8 3.1496 -0.7875 -3.7063 19 6 1.5028 0.4276 -4.8291 20 6 2.0457 0.4135 -6.0825 21 7 1.1960 1.0870 -6.8837 22 6 1.3571 1.3309 -8.3192 23 6 2.0333 0.1213 -8.9717 24 6 2.2707 0.4178 -10.4549 25 8 3.0643 1.5992 -10.5837 26 6 2.4593 2.7714 -10.0338 27 6 2.2315 2.5703 -8.5334 28 7 0.1312 1.5142 -6.0776 29 7 0.3449 1.1084 -4.8745 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2468 -2.3964 4.2425 35 1 1.9983 -2.7093 -2.0781 36 1 2.0699 -2.6549 -0.3001 37 1 0.5490 -2.2724 -1.1420 38 1 0.6118 0.3701 -2.3794 39 1 2.9757 -0.0504 -6.3759 40 1 0.3795 1.4914 -8.7738 41 1 2.9883 -0.0701 -8.4825 42 1 1.3903 -0.7532 -8.8721 43 1 1.3124 0.5676 -10.9522 44 1 2.7917 -0.4220 -10.9147 45 1 1.5034 2.9518 -10.5257 46 1 3.1161 3.6270 -10.1904 47 1 1.7300 3.4456 -8.1206 48 1 3.1902 2.4303 -8.0341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329170166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:44 Heat of formation + Delta-G solvation = 0.345686 kcal Electronic energy + Delta-G solvation = -28986.368993 eV Core-core repulsion = 24884.911521 eV Total energy + Delta-G solvation = -4101.457471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39157 -40.84012 -40.29723 -38.39809 -36.50979 -35.60033 -33.62849 -32.69386 -32.28505 -32.06150 -30.70896 -29.79738 -26.74186 -26.16248 -25.58355 -24.76758 -24.03894 -23.43423 -21.65372 -21.21572 -20.67575 -19.62209 -19.19770 -17.73255 -17.33973 -17.12693 -16.85300 -16.65590 -16.54413 -16.02015 -15.91188 -15.84403 -15.60066 -15.36731 -15.13539 -14.90239 -14.78522 -14.54779 -13.92861 -13.51985 -13.48356 -13.40205 -13.08346 -12.99039 -12.77495 -12.75912 -12.63913 -12.62569 -12.44000 -12.26599 -12.16769 -12.02150 -11.66404 -11.60313 -11.49997 -11.27385 -11.23507 -10.93187 -10.74022 -10.46914 -10.07739 -9.01947 -7.91790 -5.20592 0.05853 0.56032 0.92119 1.49066 1.51920 1.57790 2.04499 2.19529 2.59410 2.88572 3.07871 3.14129 3.41394 3.43371 3.60392 3.75015 3.80045 3.84599 3.90323 3.99003 4.08356 4.08645 4.15363 4.22174 4.33502 4.45375 4.53211 4.59175 4.60936 4.67403 4.72019 4.77219 4.87472 4.89018 4.95786 4.97043 5.03266 5.04921 5.20647 5.26007 5.36593 5.47417 5.55200 5.61946 6.18149 6.30033 6.41041 6.84514 7.11392 7.36856 8.10229 8.34844 9.31387 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.001890 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.601144 B =14808.113048 C =14919.225739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.166 3.834 3 H 0.046 0.954 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.973 3.027 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.280 1.280 13 C 0.150 3.850 14 H 0.067 0.933 15 C -0.150 4.150 16 N -0.696 5.696 17 C 0.602 3.398 18 O -0.569 6.569 19 C -0.117 4.117 20 C 0.110 3.890 21 N -0.342 5.342 22 C 0.143 3.857 23 C -0.167 4.167 24 C 0.066 3.934 25 O -0.399 6.399 26 C 0.067 3.933 27 C -0.164 4.164 28 N -0.080 5.080 29 N -0.221 5.221 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.226 0.774 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 7.286 -34.108 35.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.064 0.936 4 N -0.374 5.374 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.206 1.206 13 C 0.045 3.955 14 H 0.085 0.915 15 C -0.208 4.208 16 N -0.348 5.348 17 C 0.387 3.613 18 O -0.448 6.448 19 C -0.257 4.257 20 C -0.048 4.048 21 N -0.127 5.127 22 C 0.044 3.956 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.317 6.317 26 C -0.010 4.010 27 C -0.203 4.203 28 N -0.060 5.060 29 N -0.094 5.094 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.212 0.788 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.242 0.758 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.105 0.895 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.045 7.787 -34.103 35.343 hybrid contribution 0.583 -0.365 1.510 1.659 sum -4.463 7.422 -32.593 33.724 Atomic orbital electron populations 1.22363 0.96915 1.01641 1.00933 1.20500 0.93684 0.94924 0.85233 0.93571 1.42610 1.78604 1.10540 1.05655 1.19566 1.35164 0.94248 0.88118 0.90618 1.25536 1.02906 0.96921 1.01396 1.69806 1.52460 1.10105 1.29484 0.85226 0.77910 0.77255 0.79434 1.20392 1.22308 1.20625 1.20986 0.97705 0.93219 0.83613 0.91524 1.22041 1.02235 0.95061 1.01496 1.45883 1.26039 1.55710 1.07136 1.17020 0.83345 0.78722 0.82171 1.90794 1.23257 1.44950 1.85766 1.21341 0.97031 1.11608 0.95728 1.23592 0.97621 0.94426 0.89160 1.50898 1.15112 1.35914 1.10745 1.22058 1.03179 0.97847 0.72565 1.22734 1.02569 0.96824 0.98474 1.22707 0.97162 0.88419 0.92843 1.87995 1.46294 1.17500 1.79958 1.22674 1.00198 0.88515 0.89622 1.22683 1.00399 0.97170 1.00074 1.81914 1.08341 1.20848 0.94898 1.74612 1.13686 1.07913 1.13199 0.92796 0.91248 0.93693 0.78809 0.94057 0.92517 0.92442 0.91206 0.74840 0.75754 0.85283 0.89535 0.88408 0.90799 0.86480 0.90702 0.86950 0.89460 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 9.01 71.98 0.65 -4.81 16 2 C 0.17 6.59 2.93 44.99 0.13 6.72 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 4 N -0.73 -36.82 5.03 -322.95 -1.63 -38.44 16 5 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 9 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.15 5.39 2.62 44.99 0.12 5.51 16 14 H 0.07 2.73 7.58 -2.38 -0.02 2.71 16 15 C -0.15 -5.22 9.00 71.98 0.65 -4.57 16 16 N -0.70 -21.18 4.99 -445.70 -2.22 -23.40 16 17 C 0.60 18.52 7.78 86.69 0.67 19.19 16 18 O -0.57 -20.45 16.53 -4.03 -0.07 -20.52 16 19 C -0.12 -2.97 6.99 40.82 0.29 -2.68 16 20 C 0.11 2.00 10.40 83.85 0.87 2.87 16 21 N -0.34 -5.39 3.55 -325.98 -1.16 -6.54 16 22 C 0.14 1.15 3.31 45.11 0.15 1.30 16 23 C -0.17 -0.84 5.15 30.69 0.16 -0.69 16 24 C 0.07 0.25 6.84 72.02 0.49 0.74 16 25 O -0.40 -3.43 10.77 -148.98 -1.60 -5.04 16 26 C 0.07 0.33 6.84 72.01 0.49 0.82 16 27 C -0.16 -1.19 5.75 30.68 0.18 -1.01 16 28 N -0.08 -1.81 13.78 37.02 0.51 -1.30 16 29 N -0.22 -5.73 12.04 -49.99 -0.60 -6.33 16 30 H 0.05 1.85 6.57 -2.39 -0.02 1.84 16 31 H 0.07 1.91 6.29 -2.39 -0.02 1.89 16 32 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.38 20.23 5.77 -92.70 -0.54 19.69 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.06 2.25 6.29 -2.39 -0.02 2.23 16 37 H 0.07 2.23 6.57 -2.39 -0.02 2.21 16 38 H 0.41 11.33 6.26 -92.71 -0.58 10.75 16 39 H 0.23 2.87 7.27 -2.91 -0.02 2.85 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.50 7.08 -2.39 -0.02 0.49 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.15 387.99 1.57 -71.58 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.12 Total: 33.52 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.15 Total: 7.08 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -4.81 Total: -135.19 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.67 Total: -25.56 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.15 1.57 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.927 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds