Wall clock time and date at job start Tue Mar 31 2020 19:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08993 * 109.47536 * 300.00095 * 13 2 1 15 15 C 1.53006 * 109.46920 * 179.97438 * 13 2 1 16 16 N 1.46507 * 109.46993 * 60.00253 * 13 2 1 17 17 C 1.34774 * 120.00020 * 204.99906 * 16 13 2 18 18 O 1.21595 * 119.99807 * 359.97438 * 17 16 13 19 19 C 1.47514 * 119.99944 * 179.97438 * 17 16 13 20 20 C 1.36598 * 125.77156 * 179.71576 * 19 17 16 21 21 N 1.34810 * 106.84390 * 179.90166 * 20 19 17 22 22 C 1.46504 * 126.59825 * 180.13461 * 21 20 19 23 23 C 1.53169 * 109.54274 * 35.06058 * 22 21 20 24 24 C 1.53102 * 109.15868 * 183.24402 * 23 22 21 25 25 O 1.42905 * 109.48808 * 57.47711 * 24 23 22 26 26 C 1.42906 * 114.09421 * 298.89175 * 25 24 23 27 27 C 1.53092 * 109.41579 * 61.15791 * 26 25 24 28 28 N 1.40208 * 106.80988 * 0.35582 * 21 20 19 29 29 N 1.28765 * 108.36524 * 359.77379 * 28 21 20 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.09004 * 109.46812 * 180.02562 * 15 13 2 36 36 H 1.08993 * 109.47512 * 300.00623 * 15 13 2 37 37 H 1.09003 * 109.46879 * 60.00646 * 15 13 2 38 38 H 0.97004 * 119.99943 * 24.99941 * 16 13 2 39 39 H 1.08006 * 126.57515 * 0.03847 * 20 19 17 40 40 H 1.08998 * 109.54278 * 155.24186 * 22 21 20 41 41 H 1.09006 * 109.52780 * 303.06559 * 23 22 21 42 42 H 1.09008 * 109.52264 * 63.25099 * 23 22 21 43 43 H 1.08998 * 109.40693 * 297.49318 * 24 23 22 44 44 H 1.08997 * 109.48692 * 177.50655 * 24 23 22 45 45 H 1.09003 * 109.47796 * 301.17567 * 26 25 24 46 46 H 1.09001 * 109.48041 * 181.14022 * 26 25 24 47 47 H 1.09007 * 109.52192 * 182.48713 * 27 26 25 48 48 H 1.08995 * 109.57773 * 62.32393 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 1.6767 -1.7489 -1.2493 15 6 3.5701 -0.7206 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7029 -3.6064 18 8 1.7127 -1.8826 -3.6611 19 6 0.9308 -0.0076 -4.8107 20 6 0.7609 -0.5698 -6.0439 21 7 0.2952 0.4010 -6.8551 22 6 -0.0389 0.2671 -8.2752 23 6 -0.6255 -1.1239 -8.5346 24 6 -0.8960 -1.2837 -10.0330 25 8 0.3164 -1.0781 -10.7609 26 6 0.8838 0.2228 -10.5939 27 6 1.2279 0.4423 -9.1184 28 7 0.1971 1.5650 -6.0796 29 7 0.5793 1.2877 -4.8816 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 3.9334 -1.2341 -2.1397 36 1 3.9330 0.3071 -1.2496 37 1 3.9337 -1.2343 -0.3595 38 1 1.3210 0.9106 -2.4018 39 1 0.9592 -1.5960 -6.3163 40 1 -0.7689 1.0280 -8.5513 41 1 0.0846 -1.8849 -8.2107 42 1 -1.5578 -1.2352 -7.9808 43 1 -1.6378 -0.5495 -10.3474 44 1 -1.2722 -2.2877 -10.2295 45 1 0.1652 0.9767 -10.9156 46 1 1.7898 0.3042 -11.1944 47 1 1.6198 1.4502 -8.9818 48 1 1.9769 -0.2853 -8.8059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329170167.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:46 Heat of formation + Delta-G solvation = -3.963912 kcal Electronic energy + Delta-G solvation = -29021.088010 eV Core-core repulsion = 24919.443661 eV Total energy + Delta-G solvation = -4101.644350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41926 -40.86215 -40.31378 -38.39837 -36.53260 -35.86995 -33.68620 -32.71599 -32.31169 -32.09997 -30.74803 -29.96955 -26.72799 -25.80299 -25.44947 -24.72636 -23.83349 -23.45887 -21.70788 -21.57258 -21.22179 -19.50269 -19.40431 -17.80273 -17.41669 -17.28301 -16.98032 -16.70854 -16.38856 -15.95150 -15.90721 -15.74774 -15.69972 -15.33050 -15.06540 -14.93155 -14.87903 -14.64685 -14.24463 -13.57860 -13.51086 -13.43550 -13.24648 -12.93254 -12.79496 -12.64770 -12.60176 -12.49664 -12.44963 -12.28730 -12.28165 -11.87050 -11.67573 -11.52476 -11.37040 -11.29447 -11.17709 -10.96639 -10.75639 -10.50289 -10.13998 -9.11487 -8.34220 -5.29032 0.03221 0.52838 0.89560 1.60657 1.70566 1.86449 1.97958 2.15717 2.74859 2.86948 3.04427 3.11679 3.41501 3.44301 3.54873 3.70405 3.73111 3.78272 3.80631 3.86205 4.06079 4.10488 4.13750 4.20029 4.24069 4.43198 4.48630 4.51464 4.57347 4.64478 4.69565 4.75706 4.78815 4.85621 4.87125 4.93908 4.94466 5.02916 5.07639 5.21671 5.34050 5.38773 5.42583 5.64707 6.16539 6.35862 6.53213 6.81272 7.05644 7.11755 8.00718 8.12650 9.17217 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.001875 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.648275 B =14925.848752 C =15109.264271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.055 0.945 4 N -0.740 5.740 5 C -0.323 4.323 6 H 0.069 0.931 7 C -0.106 4.106 8 N -0.976 5.976 9 Si 1.127 2.873 10 H -0.296 1.296 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.151 3.849 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.694 5.694 17 C 0.605 3.395 18 O -0.569 6.569 19 C -0.117 4.117 20 C 0.110 3.890 21 N -0.342 5.342 22 C 0.143 3.857 23 C -0.167 4.167 24 C 0.066 3.934 25 O -0.398 6.398 26 C 0.067 3.933 27 C -0.164 4.164 28 N -0.081 5.081 29 N -0.220 5.220 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.360 0.640 34 H 0.244 0.756 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.414 0.586 39 H 0.226 0.774 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 5.477 -34.041 35.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.073 0.927 4 N -0.382 5.382 5 C -0.454 4.454 6 H 0.087 0.913 7 C -0.297 4.297 8 N -0.624 5.624 9 Si 0.952 3.048 10 H -0.222 1.222 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.046 3.954 14 H 0.088 0.912 15 C -0.202 4.202 16 N -0.344 5.344 17 C 0.390 3.610 18 O -0.447 6.447 19 C -0.257 4.257 20 C -0.048 4.048 21 N -0.126 5.126 22 C 0.043 3.957 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.317 6.317 26 C -0.010 4.010 27 C -0.203 4.203 28 N -0.060 5.060 29 N -0.094 5.094 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.192 0.808 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.250 0.750 39 H 0.242 0.758 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.131 0.869 47 H 0.106 0.894 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.951 6.142 -32.602 34.115 hybrid contribution -0.236 -0.748 -1.064 1.321 sum -8.187 5.394 -33.666 35.064 Atomic orbital electron populations 1.22271 0.97519 1.00656 1.00862 1.20469 0.92910 0.95409 0.84838 0.92655 1.42434 1.79656 1.09542 1.06578 1.20315 1.39946 0.95330 0.89822 0.91317 1.27132 0.99838 0.97621 1.05093 1.70985 1.53984 1.09428 1.28028 0.82629 0.76817 0.73484 0.71844 1.22203 1.20376 1.20554 1.20987 0.94335 0.96512 0.83601 0.91228 1.21940 0.94791 1.02152 1.01279 1.45683 1.65618 1.14652 1.08466 1.16969 0.76753 0.85298 0.81965 1.90793 1.52687 1.16079 1.85155 1.21318 1.16365 0.91828 0.96192 1.23594 0.94361 0.97808 0.89043 1.50899 1.42861 1.07417 1.11450 1.22063 0.99472 1.01657 0.72482 1.22735 1.03478 0.94142 1.00268 1.22701 0.86513 1.04399 0.87506 1.87996 1.40666 1.33560 1.69494 1.22681 1.00270 0.84916 0.93169 1.22682 0.96339 1.04344 0.96900 1.81921 1.22387 1.05655 0.96047 1.74619 1.08910 1.13335 1.12528 0.93913 0.91322 0.94447 0.80783 0.94585 0.92598 0.92112 0.92788 0.74969 0.75753 0.85318 0.89511 0.88498 0.90814 0.86492 0.90727 0.86887 0.89424 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.33 71.98 0.67 -4.95 16 2 C 0.17 6.85 2.52 44.99 0.11 6.96 16 3 H 0.06 2.19 8.08 -2.38 -0.02 2.17 16 4 N -0.74 -36.93 4.43 -322.94 -1.43 -38.36 16 5 C -0.32 -17.93 9.93 84.03 0.83 -17.10 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 7 C -0.11 -6.14 5.50 84.86 0.47 -5.68 16 8 N -0.98 -61.50 13.70 21.65 0.30 -61.20 16 9 Si 1.13 52.28 29.92 68.60 2.05 54.33 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.15 5.35 2.21 44.99 0.10 5.45 16 14 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 15 C -0.14 -5.11 9.33 71.98 0.67 -4.44 16 16 N -0.69 -20.75 4.38 -445.71 -1.95 -22.71 16 17 C 0.60 18.22 7.78 86.69 0.67 18.90 16 18 O -0.57 -20.02 16.53 -4.02 -0.07 -20.09 16 19 C -0.12 -2.92 6.99 40.81 0.29 -2.63 16 20 C 0.11 1.97 10.40 83.85 0.87 2.84 16 21 N -0.34 -5.32 3.55 -325.97 -1.16 -6.47 16 22 C 0.14 1.13 3.31 45.11 0.15 1.28 16 23 C -0.17 -0.85 5.15 30.69 0.16 -0.69 16 24 C 0.07 0.25 6.84 72.02 0.49 0.74 16 25 O -0.40 -3.36 10.77 -148.98 -1.60 -4.96 16 26 C 0.07 0.31 6.84 72.01 0.49 0.81 16 27 C -0.16 -1.13 5.75 30.69 0.18 -0.95 16 28 N -0.08 -1.80 13.78 37.02 0.51 -1.29 16 29 N -0.22 -5.67 12.04 -50.00 -0.60 -6.27 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.09 7.44 -2.39 -0.02 2.08 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.36 19.06 6.42 -92.71 -0.59 18.47 16 34 H 0.24 15.35 6.77 -92.71 -0.63 14.73 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.18 7.45 -2.39 -0.02 2.16 16 38 H 0.41 11.19 8.07 -92.71 -0.75 10.45 16 39 H 0.23 2.80 7.27 -2.91 -0.02 2.78 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.50 7.08 -2.38 -0.02 0.48 16 42 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.76 393.99 1.99 -72.77 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.22 Total: 33.72 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.16 Total: 0.54 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -4.33 Total: -136.31 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -1.67 Total: -25.05 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Total: -74.76 1.99 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170167.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.809 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds