Wall clock time and date at job start Tue Mar 31 2020 19:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47324 * 2 1 4 4 N 1.46502 * 109.47033 * 240.00147 * 2 1 3 5 5 C 1.36938 * 119.99928 * 85.00029 * 4 2 1 6 6 H 1.07998 * 120.00246 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00326 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00557 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99785 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46824 * 89.99685 * 9 7 5 11 11 H 1.48498 * 109.47307 * 209.99925 * 9 7 5 12 12 H 1.48501 * 109.47051 * 330.00398 * 9 7 5 13 13 C 1.52999 * 109.47373 * 120.00549 * 2 1 3 14 14 H 1.09003 * 109.47159 * 185.00059 * 13 2 1 15 15 C 1.53000 * 109.47122 * 64.99512 * 13 2 1 16 16 N 1.46507 * 109.46500 * 304.99624 * 13 2 1 17 17 C 1.34782 * 119.99543 * 204.99533 * 16 13 2 18 18 O 1.21595 * 119.99969 * 0.02562 * 17 16 13 19 19 C 1.47517 * 119.99792 * 180.02562 * 17 16 13 20 20 C 1.36596 * 125.77412 * 179.97438 * 19 17 16 21 21 N 1.34807 * 106.84342 * 180.02562 * 20 19 17 22 22 C 1.46507 * 126.59524 * 180.26460 * 21 20 19 23 23 C 1.53171 * 109.54224 * 34.53069 * 22 21 20 24 24 C 1.53108 * 109.15650 * 183.24262 * 23 22 21 25 25 O 1.42904 * 109.48567 * 57.47451 * 24 23 22 26 26 C 1.42903 * 114.09972 * 298.88988 * 25 24 23 27 27 C 1.53094 * 109.41687 * 61.15673 * 26 25 24 28 28 N 1.40215 * 106.81120 * 359.97438 * 21 20 19 29 29 N 1.28755 * 108.36492 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47149 * 299.99691 * 1 2 3 32 32 H 1.09002 * 109.47407 * 59.99501 * 1 2 3 33 33 H 0.96996 * 120.00387 * 264.99826 * 4 2 1 34 34 H 0.96992 * 120.00441 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.46783 * 60.00918 * 15 13 2 36 36 H 1.09001 * 109.46369 * 180.02562 * 15 13 2 37 37 H 1.08990 * 109.47310 * 300.00148 * 15 13 2 38 38 H 0.96993 * 120.00294 * 25.00711 * 16 13 2 39 39 H 1.08000 * 126.57450 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.54125 * 154.70904 * 22 21 20 41 41 H 1.09000 * 109.52047 * 303.05678 * 23 22 21 42 42 H 1.09000 * 109.52587 * 63.24680 * 23 22 21 43 43 H 1.08999 * 109.40208 * 297.49379 * 24 23 22 44 44 H 1.08996 * 109.48097 * 177.50249 * 24 23 22 45 45 H 1.09005 * 109.47987 * 301.17723 * 26 25 24 46 46 H 1.08998 * 109.48303 * 181.14155 * 26 25 24 47 47 H 1.09003 * 109.52301 * 182.48940 * 27 26 25 48 48 H 1.09003 * 109.57048 * 62.33042 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4244 7 6 2.6112 -0.6618 -3.5094 8 7 2.7364 -0.0053 -4.6432 9 14 3.0555 -2.4743 -3.4256 10 1 1.8580 -3.2927 -3.7443 11 1 4.1304 -2.7664 -4.4076 12 1 3.5310 -2.8047 -2.0581 13 6 2.0400 -0.7214 1.2491 14 1 3.1264 -0.6444 1.2950 15 6 1.6352 -2.1955 1.1878 16 7 1.4559 -0.1037 2.4423 17 6 2.0913 -0.1940 3.6275 18 8 3.1496 -0.7876 3.7063 19 6 1.5029 0.4274 4.8291 20 6 2.0427 0.4082 6.0837 21 7 1.1950 1.0852 6.8840 22 6 1.3581 1.3323 8.3189 23 6 2.8439 1.5186 8.6411 24 6 3.0118 1.6954 10.1527 25 8 2.4631 0.5624 10.8290 26 6 1.0656 0.3679 10.6023 27 6 0.8197 0.1356 9.1092 28 7 0.1307 1.5132 6.0778 29 7 0.3449 1.1082 4.8745 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2490 -1.6317 -1.1527 34 1 3.0597 -0.4625 -5.4352 35 1 2.0698 -2.6550 0.3001 36 1 1.9982 -2.7092 2.0780 37 1 0.5490 -2.2724 1.1419 38 1 0.6118 0.3700 2.3794 39 1 2.9701 -0.0604 6.3782 40 1 0.8087 2.2311 8.5988 41 1 3.4004 0.6403 8.3143 42 1 3.2204 2.4022 8.1257 43 1 2.4897 2.5973 10.4720 44 1 4.0713 1.7841 10.3928 45 1 0.5181 1.2525 10.9276 46 1 0.7231 -0.4996 11.1664 47 1 -0.2501 0.0311 8.9282 48 1 1.3333 -0.7717 8.7914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329170168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:50 Heat of formation + Delta-G solvation = 29.629823 kcal Electronic energy + Delta-G solvation = -29062.952342 eV Core-core repulsion = 24962.764726 eV Total energy + Delta-G solvation = -4100.187616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58105 -40.10126 -39.49180 -37.02124 -35.97277 -34.00067 -32.19401 -32.04147 -31.80827 -31.07824 -29.53429 -28.53857 -26.19927 -24.78514 -24.46420 -23.92359 -22.80405 -22.48961 -20.78276 -20.53148 -19.30672 -18.64204 -17.82588 -17.02134 -16.87125 -16.35015 -16.09613 -15.72861 -15.47445 -15.18408 -15.02182 -14.72431 -14.48423 -14.34255 -14.02330 -13.95861 -13.68251 -13.24721 -12.71287 -12.63271 -12.57316 -12.34057 -12.24249 -12.12635 -11.91075 -11.73789 -11.70410 -11.49844 -11.18015 -11.08735 -10.87102 -10.65749 -10.58450 -10.45998 -10.29141 -10.07596 -9.98946 -9.56211 -9.55051 -8.94327 -8.85976 -7.28928 -5.75915 -3.12210 0.83580 1.54739 1.56639 3.10287 3.17041 3.27822 3.39328 3.42017 3.47229 3.55843 3.76995 3.93334 4.04059 4.10313 4.35505 4.39946 4.49774 4.60217 4.62470 4.72725 4.76383 4.86572 4.93927 4.98653 5.15278 5.19719 5.23017 5.33730 5.34271 5.44756 5.55198 5.59354 5.67513 5.95751 6.00130 6.05945 6.20153 6.32263 6.35857 6.40253 6.50714 6.67654 6.78077 7.02882 7.50917 7.77382 7.99745 8.25649 8.42609 9.20630 9.92815 10.11840 11.42166 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.001977 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.478899 B =14159.103682 C =14409.395332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.133 3.867 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.701 5.701 17 C 0.601 3.399 18 O -0.541 6.541 19 C -0.095 4.095 20 C 0.093 3.907 21 N -0.358 5.358 22 C 0.151 3.849 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.378 6.378 26 C 0.066 3.934 27 C -0.169 4.169 28 N -0.066 5.066 29 N -0.202 5.202 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.202 0.798 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 2.266 34.861 35.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.388 5.388 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.110 0.890 15 C -0.220 4.220 16 N -0.353 5.353 17 C 0.385 3.615 18 O -0.418 6.418 19 C -0.234 4.234 20 C -0.064 4.064 21 N -0.143 5.143 22 C 0.049 3.951 23 C -0.211 4.211 24 C -0.011 4.011 25 O -0.296 6.296 26 C -0.012 4.012 27 C -0.208 4.208 28 N -0.045 5.045 29 N -0.075 5.075 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.198 0.802 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.245 0.755 39 H 0.219 0.781 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.879 2.668 34.785 35.102 hybrid contribution 0.618 -1.382 -0.268 1.537 sum -3.261 1.285 34.517 34.694 Atomic orbital electron populations 1.22503 0.98635 1.01346 1.00539 1.20332 0.92491 0.95901 0.84990 0.92026 1.42792 1.79804 1.09544 1.06670 1.19053 1.37135 0.95703 0.85367 0.89086 1.24653 1.01325 0.97488 0.95558 1.69692 1.52555 1.35549 1.00233 0.86606 0.78207 0.86899 0.77183 1.21021 1.21682 1.20191 1.21400 0.99245 0.92745 0.83763 0.89026 1.22176 1.01925 0.95901 1.02028 1.46014 1.25937 1.55750 1.07610 1.16761 0.83804 0.79258 0.81721 1.90809 1.22027 1.43639 1.85286 1.21575 0.96228 1.10023 0.95616 1.23274 0.97432 0.95480 0.90175 1.50642 1.16669 1.37277 1.09729 1.21640 0.98539 1.00775 0.74097 1.22733 0.93915 1.05126 0.99329 1.22574 1.00643 0.88904 0.88937 1.88015 1.23235 1.48034 1.70311 1.22594 0.82451 1.02566 0.93562 1.22715 1.03462 0.98055 0.96546 1.82002 1.07178 1.20408 0.94919 1.74647 1.13224 1.07425 1.12255 0.92911 0.94228 0.91822 0.80244 0.93046 0.91289 0.92670 0.92053 0.75544 0.78135 0.86665 0.89305 0.89033 0.92271 0.87431 0.92266 0.87615 0.89239 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.01 37.16 0.33 -2.55 16 2 C 0.17 3.29 2.93 -67.93 -0.20 3.09 16 3 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 4 N -0.74 -17.34 4.84 -53.43 -0.26 -17.60 16 5 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 9 Si 0.88 22.13 27.74 -169.99 -4.71 17.41 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 13 C 0.13 2.24 2.62 -67.93 -0.18 2.07 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 15 C -0.16 -2.59 9.00 37.16 0.33 -2.26 16 16 N -0.70 -10.34 4.99 -54.85 -0.27 -10.61 16 17 C 0.60 8.98 7.78 -12.48 -0.10 8.88 16 18 O -0.54 -9.35 16.53 5.28 0.09 -9.26 16 19 C -0.10 -1.20 6.99 -83.55 -0.58 -1.79 16 20 C 0.09 0.89 10.39 -16.84 -0.17 0.71 16 21 N -0.36 -3.04 3.55 -54.38 -0.19 -3.24 16 22 C 0.15 0.74 3.32 -67.74 -0.22 0.52 16 23 C -0.17 -0.62 5.14 -26.59 -0.14 -0.75 16 24 C 0.07 0.20 6.84 37.21 0.25 0.46 16 25 O -0.38 -1.94 10.77 -35.23 -0.38 -2.32 16 26 C 0.07 0.22 6.84 37.21 0.25 0.47 16 27 C -0.17 -0.71 5.75 -26.59 -0.15 -0.86 16 28 N -0.07 -0.77 13.78 60.35 0.83 0.07 16 29 N -0.20 -2.65 12.04 32.85 0.40 -2.25 16 30 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 31 H 0.04 0.55 6.29 -51.93 -0.33 0.23 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.36 8.33 3.63 -40.82 -0.15 8.19 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.07 1.18 6.29 -51.93 -0.33 0.85 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 38 H 0.41 5.53 6.26 -40.82 -0.26 5.28 16 39 H 0.20 1.41 7.26 -52.49 -0.38 1.03 16 40 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.34 7.08 -51.93 -0.37 -0.03 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -34.73 384.85 -5.87 -40.60 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.12 Total: 8.77 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.82 Total: 1.11 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 1.28 Total: -62.11 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.29 Total: -11.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.73 -5.87 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.231 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds