Wall clock time and date at job start Tue Mar 31 2020 19:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47324 * 2 1 4 4 N 1.46502 * 109.47033 * 240.00147 * 2 1 3 5 5 C 1.36938 * 119.99928 * 85.00029 * 4 2 1 6 6 H 1.07998 * 120.00246 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00326 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00557 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99785 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46824 * 89.99685 * 9 7 5 11 11 H 1.48498 * 109.47307 * 209.99925 * 9 7 5 12 12 H 1.48501 * 109.47051 * 330.00398 * 9 7 5 13 13 C 1.52999 * 109.47373 * 120.00549 * 2 1 3 14 14 H 1.09003 * 109.47159 * 185.00059 * 13 2 1 15 15 C 1.53000 * 109.47122 * 64.99512 * 13 2 1 16 16 N 1.46507 * 109.46500 * 304.99624 * 13 2 1 17 17 C 1.34782 * 119.99543 * 204.99533 * 16 13 2 18 18 O 1.21595 * 119.99969 * 0.02562 * 17 16 13 19 19 C 1.47517 * 119.99792 * 180.02562 * 17 16 13 20 20 C 1.36596 * 125.77412 * 179.97438 * 19 17 16 21 21 N 1.34807 * 106.84342 * 180.02562 * 20 19 17 22 22 C 1.46507 * 126.59524 * 180.26460 * 21 20 19 23 23 C 1.53171 * 109.54224 * 34.53069 * 22 21 20 24 24 C 1.53108 * 109.15650 * 183.24262 * 23 22 21 25 25 O 1.42904 * 109.48567 * 57.47451 * 24 23 22 26 26 C 1.42903 * 114.09972 * 298.88988 * 25 24 23 27 27 C 1.53094 * 109.41687 * 61.15673 * 26 25 24 28 28 N 1.40215 * 106.81120 * 359.97438 * 21 20 19 29 29 N 1.28755 * 108.36492 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47149 * 299.99691 * 1 2 3 32 32 H 1.09002 * 109.47407 * 59.99501 * 1 2 3 33 33 H 0.96996 * 120.00387 * 264.99826 * 4 2 1 34 34 H 0.96992 * 120.00441 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.46783 * 60.00918 * 15 13 2 36 36 H 1.09001 * 109.46369 * 180.02562 * 15 13 2 37 37 H 1.08990 * 109.47310 * 300.00148 * 15 13 2 38 38 H 0.96993 * 120.00294 * 25.00711 * 16 13 2 39 39 H 1.08000 * 126.57450 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.54125 * 154.70904 * 22 21 20 41 41 H 1.09000 * 109.52047 * 303.05678 * 23 22 21 42 42 H 1.09000 * 109.52587 * 63.24680 * 23 22 21 43 43 H 1.08999 * 109.40208 * 297.49379 * 24 23 22 44 44 H 1.08996 * 109.48097 * 177.50249 * 24 23 22 45 45 H 1.09005 * 109.47987 * 301.17723 * 26 25 24 46 46 H 1.08998 * 109.48303 * 181.14155 * 26 25 24 47 47 H 1.09003 * 109.52301 * 182.48940 * 27 26 25 48 48 H 1.09003 * 109.57048 * 62.33042 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4244 7 6 2.6112 -0.6618 -3.5094 8 7 2.7364 -0.0053 -4.6432 9 14 3.0555 -2.4743 -3.4256 10 1 1.8580 -3.2927 -3.7443 11 1 4.1304 -2.7664 -4.4076 12 1 3.5310 -2.8047 -2.0581 13 6 2.0400 -0.7214 1.2491 14 1 3.1264 -0.6444 1.2950 15 6 1.6352 -2.1955 1.1878 16 7 1.4559 -0.1037 2.4423 17 6 2.0913 -0.1940 3.6275 18 8 3.1496 -0.7876 3.7063 19 6 1.5029 0.4274 4.8291 20 6 2.0427 0.4082 6.0837 21 7 1.1950 1.0852 6.8840 22 6 1.3581 1.3323 8.3189 23 6 2.8439 1.5186 8.6411 24 6 3.0118 1.6954 10.1527 25 8 2.4631 0.5624 10.8290 26 6 1.0656 0.3679 10.6023 27 6 0.8197 0.1356 9.1092 28 7 0.1307 1.5132 6.0778 29 7 0.3449 1.1082 4.8745 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2490 -1.6317 -1.1527 34 1 3.0597 -0.4625 -5.4352 35 1 2.0698 -2.6550 0.3001 36 1 1.9982 -2.7092 2.0780 37 1 0.5490 -2.2724 1.1419 38 1 0.6118 0.3700 2.3794 39 1 2.9701 -0.0604 6.3782 40 1 0.8087 2.2311 8.5988 41 1 3.4004 0.6403 8.3143 42 1 3.2204 2.4022 8.1257 43 1 2.4897 2.5973 10.4720 44 1 4.0713 1.7841 10.3928 45 1 0.5181 1.2525 10.9276 46 1 0.7231 -0.4996 11.1664 47 1 -0.2501 0.0311 8.9282 48 1 1.3333 -0.7717 8.7914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329170168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:49 Heat of formation + Delta-G solvation = 3.262023 kcal Electronic energy + Delta-G solvation = -29064.095736 eV Core-core repulsion = 24962.764726 eV Total energy + Delta-G solvation = -4101.331010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39497 -40.86921 -40.30621 -38.51798 -36.51401 -35.67045 -33.76306 -32.70357 -32.34437 -32.14071 -31.01001 -30.02626 -26.74980 -26.11955 -25.49107 -24.74339 -23.92963 -23.43895 -21.66164 -21.21994 -20.77204 -20.07672 -19.25885 -17.73312 -17.34133 -17.16142 -16.93811 -16.71843 -16.47519 -16.06322 -15.95896 -15.83646 -15.60355 -15.45128 -15.15423 -14.90667 -14.84394 -14.59248 -14.05955 -13.70530 -13.49946 -13.41323 -13.21411 -13.12643 -12.87528 -12.78056 -12.63721 -12.62759 -12.44108 -12.26791 -12.24608 -11.89240 -11.77854 -11.62860 -11.50604 -11.27978 -11.25648 -10.99241 -10.74432 -10.47519 -10.09778 -9.34533 -8.00637 -5.34707 0.05830 0.55554 0.91794 1.39163 1.41945 1.48775 2.02431 2.18748 2.49545 2.88092 3.06870 3.13737 3.30610 3.43143 3.57564 3.65205 3.74608 3.79704 3.81287 3.87552 4.03353 4.08331 4.15128 4.21665 4.27702 4.44912 4.52812 4.56687 4.59025 4.64255 4.68071 4.76835 4.83088 4.88542 4.92561 4.95338 4.98843 5.04386 5.14899 5.23053 5.36210 5.42780 5.58663 5.79007 6.17638 6.22454 6.39288 6.83954 7.07327 7.10758 7.82859 8.02474 9.20563 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.001977 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.478899 B =14159.103682 C =14409.395332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 H 0.047 0.953 4 N -0.746 5.746 5 C -0.227 4.227 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.982 5.982 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.252 1.252 13 C 0.146 3.854 14 H 0.073 0.927 15 C -0.157 4.157 16 N -0.697 5.697 17 C 0.604 3.396 18 O -0.567 6.567 19 C -0.118 4.118 20 C 0.110 3.890 21 N -0.342 5.342 22 C 0.143 3.857 23 C -0.167 4.167 24 C 0.066 3.934 25 O -0.398 6.398 26 C 0.066 3.934 27 C -0.163 4.163 28 N -0.081 5.081 29 N -0.221 5.221 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 1.304 38.048 38.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.065 0.935 4 N -0.391 5.391 5 C -0.358 4.358 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.633 5.633 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.224 1.224 12 H -0.177 1.177 13 C 0.040 3.960 14 H 0.091 0.909 15 C -0.215 4.215 16 N -0.349 5.349 17 C 0.389 3.611 18 O -0.446 6.446 19 C -0.258 4.258 20 C -0.048 4.048 21 N -0.127 5.127 22 C 0.043 3.957 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.317 6.317 26 C -0.011 4.011 27 C -0.202 4.202 28 N -0.061 5.061 29 N -0.094 5.094 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.203 0.797 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.146 0.854 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.106 0.894 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.216 1.726 38.061 38.332 hybrid contribution 0.689 -0.945 -1.085 1.595 sum -3.527 0.781 36.976 37.152 Atomic orbital electron populations 1.22350 0.96481 1.02141 1.01069 1.20470 0.93863 0.95063 0.84539 0.93469 1.42758 1.80087 1.09728 1.06540 1.18995 1.35178 0.94562 0.87022 0.92316 1.25454 1.02347 1.02441 0.95212 1.69871 1.54658 1.37650 1.01122 0.85515 0.77852 0.81009 0.78091 1.20172 1.22354 1.17664 1.21036 0.98128 0.93334 0.83471 0.90911 1.22130 1.02778 0.94774 1.01846 1.45860 1.26106 1.55814 1.07089 1.16977 0.83310 0.78680 0.82111 1.90790 1.23140 1.44894 1.85753 1.21354 0.97064 1.11623 0.95747 1.23603 0.97735 0.94262 0.89201 1.50898 1.15358 1.35730 1.10688 1.22055 0.99940 1.01704 0.71986 1.22735 0.92635 1.05313 0.99943 1.22699 1.01414 0.88870 0.88144 1.87993 1.24105 1.48918 1.70692 1.22682 0.81975 1.03667 0.92741 1.22674 1.03145 0.97231 0.97139 1.81926 1.08360 1.20920 0.94874 1.74616 1.13647 1.08012 1.13152 0.91942 0.91046 0.93985 0.79716 0.93394 0.92198 0.92044 0.90656 0.74786 0.75702 0.85424 0.89426 0.88546 0.90886 0.86508 0.90802 0.86870 0.89406 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.01 71.98 0.65 -4.60 16 2 C 0.17 6.36 2.93 44.99 0.13 6.50 16 3 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 4 N -0.75 -34.51 4.84 -322.94 -1.56 -36.07 16 5 C -0.23 -12.89 10.41 84.03 0.87 -12.01 16 6 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 7 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 8 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 9 Si 0.95 45.72 27.74 68.60 1.90 47.62 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 13 C 0.15 4.76 2.62 44.99 0.12 4.88 16 14 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 15 C -0.16 -4.71 9.00 71.98 0.65 -4.06 16 16 N -0.70 -19.69 4.99 -445.69 -2.22 -21.91 16 17 C 0.60 17.37 7.78 86.69 0.67 18.05 16 18 O -0.57 -19.02 16.53 -4.02 -0.07 -19.09 16 19 C -0.12 -2.83 6.99 40.81 0.29 -2.55 16 20 C 0.11 1.88 10.39 83.85 0.87 2.75 16 21 N -0.34 -5.13 3.55 -325.97 -1.16 -6.29 16 22 C 0.14 1.07 3.32 45.11 0.15 1.22 16 23 C -0.17 -0.78 5.14 30.69 0.16 -0.62 16 24 C 0.07 0.23 6.84 72.02 0.49 0.72 16 25 O -0.40 -3.20 10.77 -148.98 -1.60 -4.81 16 26 C 0.07 0.28 6.84 72.01 0.49 0.78 16 27 C -0.16 -1.03 5.75 30.69 0.18 -0.85 16 28 N -0.08 -1.77 13.78 37.02 0.51 -1.26 16 29 N -0.22 -5.53 12.04 -50.00 -0.60 -6.13 16 30 H 0.06 1.92 6.57 -2.39 -0.02 1.91 16 31 H 0.07 1.87 6.29 -2.39 -0.02 1.85 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.37 16.34 3.63 -92.71 -0.34 16.00 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.06 1.91 6.29 -2.39 -0.02 1.90 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.04 6.56 -2.39 -0.02 2.02 16 38 H 0.41 10.61 6.26 -92.71 -0.58 10.03 16 39 H 0.23 2.60 7.26 -2.91 -0.02 2.57 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.45 7.08 -2.39 -0.02 0.43 16 42 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.07 0.10 8.14 -2.38 -0.02 0.09 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -76.09 384.85 1.71 -74.38 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.02 Total: 29.66 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.19 Total: 6.92 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -4.73 Total: -134.68 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.67 Total: -23.90 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -76.09 1.71 -74.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.644 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds