Wall clock time and date at job start Tue Mar 31 2020 19:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 N 1.46494 * 109.47480 * 120.00053 * 2 1 3 5 5 C 1.34778 * 119.99907 * 275.00673 * 4 2 1 6 6 O 1.21594 * 119.99946 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.36601 * 125.76840 * 179.97438 * 7 5 4 9 9 N 1.34811 * 106.83811 * 179.97438 * 8 7 5 10 10 C 1.46495 * 126.59602 * 180.02562 * 9 8 7 11 11 C 1.53178 * 109.54495 * 34.79510 * 10 9 8 12 12 C 1.53109 * 109.15815 * 183.24534 * 11 10 9 13 13 O 1.42896 * 109.48790 * 57.47487 * 12 11 10 14 14 C 1.42901 * 114.10170 * 298.89020 * 13 12 11 15 15 C 1.53093 * 109.41411 * 61.15346 * 14 13 12 16 16 N 1.40215 * 106.81108 * 0.02562 * 9 8 7 17 17 N 1.28756 * 108.36742 * 359.97438 * 16 9 8 18 18 C 1.53001 * 109.47186 * 240.00423 * 2 1 3 19 19 H 1.09003 * 109.46867 * 299.99584 * 18 2 1 20 20 C 1.53004 * 109.47219 * 179.97438 * 18 2 1 21 21 N 1.46494 * 109.47731 * 59.99670 * 18 2 1 22 22 C 1.36938 * 120.00568 * 205.00287 * 21 18 2 23 23 H 1.07996 * 119.99345 * 359.97438 * 22 21 18 24 24 C 1.38813 * 120.00117 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99964 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46952 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.47003 * 120.00465 * 26 24 22 29 29 H 1.48499 * 109.47138 * 240.00601 * 26 24 22 30 30 H 1.08991 * 109.47361 * 299.99855 * 1 2 3 31 31 H 1.09004 * 109.47163 * 60.00269 * 1 2 3 32 32 H 1.09000 * 109.47139 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00051 * 94.99980 * 4 2 1 34 34 H 1.07993 * 126.58084 * 359.97438 * 8 7 5 35 35 H 1.09003 * 109.54788 * 154.97814 * 10 9 8 36 36 H 1.09000 * 109.52223 * 303.06663 * 11 10 9 37 37 H 1.08997 * 109.51875 * 63.25214 * 11 10 9 38 38 H 1.09002 * 109.40620 * 297.48967 * 12 11 10 39 39 H 1.08998 * 109.47630 * 177.50571 * 12 11 10 40 40 H 1.09001 * 109.47783 * 301.18042 * 14 13 12 41 41 H 1.08997 * 109.48351 * 181.13787 * 14 13 12 42 42 H 1.09003 * 109.52248 * 182.48469 * 15 14 13 43 43 H 1.09000 * 109.57186 * 62.33487 * 15 14 13 44 44 H 1.09000 * 109.47272 * 179.97438 * 20 18 2 45 45 H 1.09000 * 109.47233 * 300.00094 * 20 18 2 46 46 H 1.09004 * 109.47084 * 59.99920 * 20 18 2 47 47 H 0.97006 * 119.99342 * 25.00075 * 21 18 2 48 48 H 0.96998 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1616 2.4116 7 6 2.6383 -0.7138 3.5617 8 6 2.8137 -0.1501 4.7935 9 7 3.2735 -1.1225 5.6061 10 6 3.6073 -0.9887 7.0263 11 6 2.6471 0.0052 7.6869 12 6 3.0538 0.2000 9.1501 13 8 4.4076 0.6532 9.2124 14 6 5.3546 -0.2589 8.6525 15 6 5.0417 -0.4704 7.1689 16 7 3.3709 -2.2866 4.8307 17 7 2.9888 -2.0094 3.6328 18 6 2.0400 -0.7212 -1.2493 19 1 1.6767 -1.7489 -1.2493 20 6 3.5700 -0.7206 -1.2496 21 7 1.5517 -0.0306 -2.4455 22 6 1.4209 -0.7137 -3.6251 23 1 1.6781 -1.7615 -3.6736 24 6 0.9577 -0.0594 -4.7583 25 7 0.6446 1.2176 -4.6992 26 14 0.7799 -0.9911 -6.3676 27 1 1.1948 -2.4033 -6.1704 28 1 -0.6369 -0.9491 -6.8100 29 1 1.6403 -0.3618 -7.4016 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 1.1525 34 1 2.6210 0.8774 5.0644 35 1 3.5202 -1.9593 7.5144 36 1 2.6971 0.9613 7.1659 37 1 1.6301 -0.3840 7.6389 38 1 2.9630 -0.7480 9.6805 39 1 2.4011 0.9398 9.6134 40 1 5.2939 -1.2129 9.1763 41 1 6.3593 0.1504 8.7574 42 1 5.7358 -1.1994 6.7506 43 1 5.1420 0.4753 6.6362 44 1 3.9334 -1.2348 -2.1394 45 1 3.9330 0.3072 -1.2498 46 1 3.9337 -1.2342 -0.3596 47 1 1.3209 0.9106 -2.4018 48 1 0.3213 1.6748 -5.4912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329170169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:53 Heat of formation + Delta-G solvation = 20.896218 kcal Electronic energy + Delta-G solvation = -28978.815721 eV Core-core repulsion = 24878.249387 eV Total energy + Delta-G solvation = -4100.566333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53562 -40.06458 -39.35783 -36.67517 -35.93896 -33.90246 -32.14720 -32.00028 -31.73660 -30.99156 -29.31268 -28.33310 -26.14214 -24.60820 -24.07570 -23.92027 -22.76398 -22.33083 -20.74555 -20.36060 -19.99681 -18.42354 -17.40468 -16.96319 -16.84171 -16.31720 -16.00159 -15.68672 -15.49320 -15.13933 -14.80235 -14.61361 -14.39686 -14.31257 -13.89113 -13.56677 -13.28287 -13.21226 -12.99590 -12.58918 -12.38490 -12.31516 -12.21278 -11.90070 -11.79945 -11.67066 -11.63830 -11.14963 -11.13401 -10.92500 -10.81167 -10.64426 -10.61771 -10.43367 -10.15427 -10.02057 -9.82681 -9.64436 -9.50476 -8.98300 -8.70933 -6.95573 -5.74947 -3.04095 0.87871 1.60468 1.60645 3.12894 3.24599 3.35600 3.44992 3.50851 3.52831 3.59565 3.80004 3.98086 4.06541 4.13212 4.38138 4.44180 4.52924 4.62154 4.66540 4.76398 4.80818 4.89354 4.96111 5.01948 5.17722 5.23817 5.32299 5.38771 5.53031 5.61631 5.73427 5.80330 5.95131 6.04287 6.17046 6.27025 6.42738 6.44091 6.47888 6.59537 6.67875 6.86435 6.98206 7.08332 7.58544 7.72614 7.84102 8.34263 8.43007 9.54357 10.09840 10.45208 11.47545 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034473 B = 0.001881 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.046427 B =14880.671134 C =15133.246480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.087 0.913 4 N -0.699 5.699 5 C 0.601 3.399 6 O -0.541 6.541 7 C -0.094 4.094 8 C 0.092 3.908 9 N -0.359 5.359 10 C 0.152 3.848 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.378 6.378 14 C 0.066 3.934 15 C -0.169 4.169 16 N -0.067 5.067 17 N -0.202 5.202 18 C 0.168 3.832 19 H 0.052 0.948 20 C -0.165 4.165 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.405 0.595 34 H 0.202 0.798 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -3.854 31.871 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.105 0.895 4 N -0.349 5.349 5 C 0.384 3.616 6 O -0.418 6.418 7 C -0.233 4.233 8 C -0.064 4.064 9 N -0.144 5.144 10 C 0.050 3.950 11 C -0.211 4.211 12 C -0.011 4.011 13 O -0.296 6.296 14 C -0.012 4.012 15 C -0.208 4.208 16 N -0.047 5.047 17 N -0.075 5.075 18 C 0.058 3.942 19 H 0.070 0.930 20 C -0.225 4.225 21 N -0.360 5.360 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.218 0.782 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.185 -4.453 31.818 32.922 hybrid contribution -0.331 0.113 -1.042 1.099 sum 6.854 -4.340 30.776 31.827 Atomic orbital electron populations 1.22057 0.94764 1.01908 1.02367 1.21404 0.94552 0.97587 0.83319 0.89486 1.45883 1.65450 1.14401 1.09150 1.16730 0.77626 0.85650 0.81585 1.90810 1.51462 1.14843 1.84662 1.21616 1.14109 0.91377 0.96203 1.23276 0.96354 0.96822 0.89994 1.50631 1.44684 1.08488 1.10564 1.21626 0.95979 1.02054 0.75366 1.22731 0.99873 1.00198 0.98283 1.22570 0.83756 1.01128 0.93598 1.88013 1.15775 1.45070 1.80731 1.22593 0.93780 0.94180 0.90604 1.22718 0.95001 1.03623 0.99481 1.81994 1.22029 1.04409 0.96220 1.74644 1.08137 1.13153 1.11616 1.20395 0.92173 0.95659 0.86000 0.93008 1.22446 0.98974 1.01073 0.99990 1.42295 1.78205 1.10676 1.04810 1.19249 1.36458 0.93922 0.87071 0.91066 1.24740 1.02176 0.95993 0.98044 1.69674 1.50862 1.08609 1.28781 0.86124 0.77254 0.78782 0.84063 1.20582 1.21929 1.21949 0.93409 0.89983 0.92978 0.75957 0.78155 0.86715 0.89286 0.89087 0.92307 0.87455 0.92292 0.87602 0.89230 0.89674 0.92625 0.93439 0.94416 0.78056 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.33 37.15 0.35 -2.36 16 2 C 0.14 2.40 2.21 -67.94 -0.15 2.25 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 4 N -0.70 -10.70 4.38 -54.85 -0.24 -10.94 16 5 C 0.60 9.29 7.78 -12.47 -0.10 9.19 16 6 O -0.54 -9.69 16.53 5.28 0.09 -9.60 16 7 C -0.09 -1.22 6.99 -83.55 -0.58 -1.81 16 8 C 0.09 0.91 10.40 -16.83 -0.18 0.74 16 9 N -0.36 -3.16 3.55 -54.39 -0.19 -3.35 16 10 C 0.15 0.78 3.32 -67.75 -0.22 0.56 16 11 C -0.17 -0.65 5.15 -26.58 -0.14 -0.78 16 12 C 0.07 0.21 6.84 37.21 0.25 0.47 16 13 O -0.38 -2.03 10.77 -35.23 -0.38 -2.41 16 14 C 0.07 0.23 6.84 37.21 0.25 0.49 16 15 C -0.17 -0.77 5.75 -26.59 -0.15 -0.92 16 16 N -0.07 -0.80 13.78 60.35 0.83 0.03 16 17 N -0.20 -2.71 12.04 32.85 0.40 -2.32 16 18 C 0.17 3.32 2.52 -67.93 -0.17 3.15 16 19 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 20 C -0.16 -3.05 9.33 37.16 0.35 -2.70 16 21 N -0.72 -17.63 4.43 -53.43 -0.24 -17.87 16 22 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 26 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.63 7.45 -51.93 -0.39 1.24 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 5.69 8.07 -40.82 -0.33 5.36 16 34 H 0.20 1.49 7.27 -52.49 -0.38 1.11 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.36 7.08 -51.93 -0.37 -0.01 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 47 H 0.39 10.14 7.58 -40.82 -0.31 9.83 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -33.55 395.68 -6.40 -39.95 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.59 Total: 9.23 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.73 Total: 1.20 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 1.28 Total: -61.67 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.29 Total: -12.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.55 -6.40 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.845 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds