Wall clock time and date at job start Tue Mar 31 2020 19:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 N 1.46494 * 109.47480 * 120.00053 * 2 1 3 5 5 C 1.34778 * 119.99907 * 275.00673 * 4 2 1 6 6 O 1.21594 * 119.99946 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.36601 * 125.76840 * 179.97438 * 7 5 4 9 9 N 1.34811 * 106.83811 * 179.97438 * 8 7 5 10 10 C 1.46495 * 126.59602 * 180.02562 * 9 8 7 11 11 C 1.53178 * 109.54495 * 34.79510 * 10 9 8 12 12 C 1.53109 * 109.15815 * 183.24534 * 11 10 9 13 13 O 1.42896 * 109.48790 * 57.47487 * 12 11 10 14 14 C 1.42901 * 114.10170 * 298.89020 * 13 12 11 15 15 C 1.53093 * 109.41411 * 61.15346 * 14 13 12 16 16 N 1.40215 * 106.81108 * 0.02562 * 9 8 7 17 17 N 1.28756 * 108.36742 * 359.97438 * 16 9 8 18 18 C 1.53001 * 109.47186 * 240.00423 * 2 1 3 19 19 H 1.09003 * 109.46867 * 299.99584 * 18 2 1 20 20 C 1.53004 * 109.47219 * 179.97438 * 18 2 1 21 21 N 1.46494 * 109.47731 * 59.99670 * 18 2 1 22 22 C 1.36938 * 120.00568 * 205.00287 * 21 18 2 23 23 H 1.07996 * 119.99345 * 359.97438 * 22 21 18 24 24 C 1.38813 * 120.00117 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99964 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46952 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.47003 * 120.00465 * 26 24 22 29 29 H 1.48499 * 109.47138 * 240.00601 * 26 24 22 30 30 H 1.08991 * 109.47361 * 299.99855 * 1 2 3 31 31 H 1.09004 * 109.47163 * 60.00269 * 1 2 3 32 32 H 1.09000 * 109.47139 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00051 * 94.99980 * 4 2 1 34 34 H 1.07993 * 126.58084 * 359.97438 * 8 7 5 35 35 H 1.09003 * 109.54788 * 154.97814 * 10 9 8 36 36 H 1.09000 * 109.52223 * 303.06663 * 11 10 9 37 37 H 1.08997 * 109.51875 * 63.25214 * 11 10 9 38 38 H 1.09002 * 109.40620 * 297.48967 * 12 11 10 39 39 H 1.08998 * 109.47630 * 177.50571 * 12 11 10 40 40 H 1.09001 * 109.47783 * 301.18042 * 14 13 12 41 41 H 1.08997 * 109.48351 * 181.13787 * 14 13 12 42 42 H 1.09003 * 109.52248 * 182.48469 * 15 14 13 43 43 H 1.09000 * 109.57186 * 62.33487 * 15 14 13 44 44 H 1.09000 * 109.47272 * 179.97438 * 20 18 2 45 45 H 1.09000 * 109.47233 * 300.00094 * 20 18 2 46 46 H 1.09004 * 109.47084 * 59.99920 * 20 18 2 47 47 H 0.97006 * 119.99342 * 25.00075 * 21 18 2 48 48 H 0.96998 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1616 2.4116 7 6 2.6383 -0.7138 3.5617 8 6 2.8137 -0.1501 4.7935 9 7 3.2735 -1.1225 5.6061 10 6 3.6073 -0.9887 7.0263 11 6 2.6471 0.0052 7.6869 12 6 3.0538 0.2000 9.1501 13 8 4.4076 0.6532 9.2124 14 6 5.3546 -0.2589 8.6525 15 6 5.0417 -0.4704 7.1689 16 7 3.3709 -2.2866 4.8307 17 7 2.9888 -2.0094 3.6328 18 6 2.0400 -0.7212 -1.2493 19 1 1.6767 -1.7489 -1.2493 20 6 3.5700 -0.7206 -1.2496 21 7 1.5517 -0.0306 -2.4455 22 6 1.4209 -0.7137 -3.6251 23 1 1.6781 -1.7615 -3.6736 24 6 0.9577 -0.0594 -4.7583 25 7 0.6446 1.2176 -4.6992 26 14 0.7799 -0.9911 -6.3676 27 1 1.1948 -2.4033 -6.1704 28 1 -0.6369 -0.9491 -6.8100 29 1 1.6403 -0.3618 -7.4016 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 1.1525 34 1 2.6210 0.8774 5.0644 35 1 3.5202 -1.9593 7.5144 36 1 2.6971 0.9613 7.1659 37 1 1.6301 -0.3840 7.6389 38 1 2.9630 -0.7480 9.6805 39 1 2.4011 0.9398 9.6134 40 1 5.2939 -1.2129 9.1763 41 1 6.3593 0.1504 8.7574 42 1 5.7358 -1.1994 6.7506 43 1 5.1420 0.4753 6.6362 44 1 3.9334 -1.2348 -2.1394 45 1 3.9330 0.3072 -1.2498 46 1 3.9337 -1.2342 -0.3596 47 1 1.3209 0.9106 -2.4018 48 1 0.3213 1.6748 -5.4912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329170169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:52 Heat of formation + Delta-G solvation = -3.545477 kcal Electronic energy + Delta-G solvation = -28979.875592 eV Core-core repulsion = 24878.249387 eV Total energy + Delta-G solvation = -4101.626205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38328 -40.79492 -40.28606 -38.24197 -36.50635 -35.59935 -33.60193 -32.69049 -32.29556 -32.08359 -30.70337 -30.13303 -26.70269 -25.91035 -25.40152 -24.69961 -23.71037 -23.42784 -21.54129 -21.50680 -21.19740 -19.50549 -19.16785 -17.70717 -17.34676 -17.21928 -16.87012 -16.62426 -16.51547 -15.93528 -15.88143 -15.66935 -15.46407 -15.31832 -14.91901 -14.87100 -14.84034 -14.58836 -14.07582 -13.50563 -13.47443 -13.38837 -13.19676 -12.93913 -12.76884 -12.74398 -12.62357 -12.58452 -12.43169 -12.27651 -12.24972 -12.08479 -11.73694 -11.50918 -11.46044 -11.26915 -11.22734 -10.98453 -10.73889 -10.45946 -10.07157 -8.99957 -7.90613 -5.19316 0.06647 0.57309 0.92716 1.50104 1.50177 1.60153 2.04514 2.21091 2.60203 2.88677 3.08553 3.14683 3.43350 3.43628 3.60409 3.75166 3.80071 3.80575 3.87037 4.03649 4.09013 4.15492 4.21209 4.22627 4.36060 4.45726 4.53539 4.58974 4.60673 4.68233 4.77290 4.79376 4.89089 4.90158 4.95751 4.96328 5.05025 5.05595 5.17401 5.32896 5.37128 5.48731 5.51270 5.58675 6.18269 6.30406 6.42589 6.85533 7.12842 7.37108 8.09660 8.34099 9.32902 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034473 B = 0.001881 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.046427 B =14880.671134 C =15133.246480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.151 3.849 3 H 0.069 0.931 4 N -0.693 5.693 5 C 0.604 3.396 6 O -0.569 6.569 7 C -0.117 4.117 8 C 0.109 3.891 9 N -0.342 5.342 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.066 3.934 13 O -0.399 6.399 14 C 0.067 3.933 15 C -0.164 4.164 16 N -0.081 5.081 17 N -0.220 5.220 18 C 0.168 3.832 19 H 0.058 0.942 20 C -0.154 4.154 21 N -0.728 5.728 22 C -0.231 4.231 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.971 3.029 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.226 0.774 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.571 -5.204 34.109 35.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.046 3.954 3 H 0.087 0.913 4 N -0.344 5.344 5 C 0.389 3.611 6 O -0.448 6.448 7 C -0.256 4.256 8 C -0.049 4.049 9 N -0.127 5.127 10 C 0.043 3.957 11 C -0.206 4.206 12 C -0.011 4.011 13 O -0.317 6.317 14 C -0.010 4.010 15 C -0.203 4.203 16 N -0.061 5.061 17 N -0.093 5.093 18 C 0.059 3.941 19 H 0.076 0.924 20 C -0.214 4.214 21 N -0.369 5.369 22 C -0.363 4.363 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.800 3.200 27 H -0.190 1.190 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.242 0.758 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.811 -5.875 34.118 35.491 hybrid contribution -0.458 0.519 -1.536 1.684 sum 7.353 -5.357 32.583 33.829 Atomic orbital electron populations 1.21939 0.94758 1.02135 1.01350 1.20992 0.94379 0.96514 0.83545 0.91310 1.45695 1.65526 1.14642 1.08499 1.16968 0.76808 0.85301 0.81996 1.90793 1.52718 1.16084 1.85172 1.21345 1.16270 0.91770 0.96241 1.23593 0.94555 0.97708 0.89021 1.50890 1.42988 1.07302 1.11504 1.22052 0.96831 1.03425 0.73345 1.22735 0.99757 0.99542 0.98567 1.22705 0.83026 1.02233 0.93167 1.87992 1.16804 1.46076 1.80866 1.22676 0.93854 0.94780 0.89707 1.22681 0.94391 1.02935 1.00293 1.81917 1.22371 1.05677 0.96121 1.74615 1.08811 1.13392 1.12517 1.20539 0.92893 0.95568 0.85149 0.92389 1.22293 0.97630 1.00663 1.00828 1.42439 1.78411 1.10257 1.05747 1.19614 1.34550 0.94236 0.87900 0.90344 1.25520 1.03137 0.96872 1.01340 1.69829 1.52708 1.10167 1.29247 0.85107 0.76607 0.78249 0.80001 1.18957 1.22305 1.22456 0.92834 0.92500 0.92065 0.74984 0.75792 0.85326 0.89525 0.88433 0.90814 0.86485 0.90721 0.86938 0.89460 0.90643 0.93732 0.94468 0.91538 0.79444 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.33 71.98 0.67 -4.43 16 2 C 0.15 5.33 2.21 44.99 0.10 5.43 16 3 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 4 N -0.69 -20.65 4.38 -445.72 -1.95 -22.60 16 5 C 0.60 18.23 7.78 86.69 0.67 18.90 16 6 O -0.57 -20.15 16.53 -4.01 -0.07 -20.22 16 7 C -0.12 -2.90 6.99 40.82 0.29 -2.62 16 8 C 0.11 1.96 10.40 83.85 0.87 2.84 16 9 N -0.34 -5.35 3.55 -325.98 -1.16 -6.51 16 10 C 0.14 1.14 3.32 45.11 0.15 1.29 16 11 C -0.17 -0.84 5.15 30.69 0.16 -0.68 16 12 C 0.07 0.25 6.84 72.02 0.49 0.74 16 13 O -0.40 -3.41 10.77 -148.98 -1.60 -5.02 16 14 C 0.07 0.33 6.84 72.01 0.49 0.82 16 15 C -0.16 -1.17 5.75 30.69 0.18 -1.00 16 16 N -0.08 -1.82 13.78 37.02 0.51 -1.31 16 17 N -0.22 -5.65 12.04 -49.99 -0.60 -6.25 16 18 C 0.17 6.54 2.52 44.99 0.11 6.65 16 19 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 20 C -0.15 -5.58 9.33 71.98 0.67 -4.90 16 21 N -0.73 -36.14 4.43 -322.94 -1.43 -37.57 16 22 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 23 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 25 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 26 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.31 7.45 -2.38 -0.02 2.29 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.41 11.07 8.07 -92.71 -0.75 10.32 16 34 H 0.23 2.83 7.27 -2.91 -0.02 2.81 16 35 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.50 7.08 -2.39 -0.02 0.48 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 2.00 7.45 -2.38 -0.02 1.99 16 47 H 0.37 20.21 7.58 -92.70 -0.70 19.51 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.22 395.68 1.70 -70.52 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.47 Total: 32.38 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.16 Total: 7.37 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -4.35 Total: -133.34 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.67 Total: -25.23 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.22 1.70 -70.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329170169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.978 kcal (2) G-P(sol) polarization free energy of solvation -72.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds