Wall clock time and date at job start Tue Mar 31 2020 20:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47042 * 2 1 4 4 C 1.35842 * 126.13572 * 270.00000 * 3 2 1 5 5 N 1.30174 * 109.00578 * 179.76264 * 4 3 2 6 6 C 1.35763 * 108.86093 * 0.38291 * 5 4 3 7 7 C 1.47326 * 126.23419 * 179.88279 * 6 5 4 8 8 O 1.21618 * 119.99864 * 179.68713 * 7 6 5 9 9 N 1.34779 * 119.99799 * 359.68962 * 7 6 5 10 10 C 1.46502 * 119.99830 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46958 * 35.00331 * 10 9 7 12 12 C 1.53000 * 109.46861 * 274.99901 * 10 9 7 13 13 C 1.52997 * 109.47004 * 154.99864 * 10 9 7 14 14 H 1.09001 * 109.47502 * 295.00420 * 13 10 9 15 15 C 1.53006 * 109.47127 * 55.00263 * 13 10 9 16 16 N 1.46902 * 109.47094 * 174.99641 * 13 10 9 17 17 C 1.46904 * 110.99949 * 154.99749 * 16 13 10 18 18 C 1.50702 * 109.47107 * 180.02562 * 17 16 13 19 19 O 1.21292 * 119.99798 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99799 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99979 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99611 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00079 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47013 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47056 * 120.00083 * 25 23 21 28 28 H 1.48504 * 109.47395 * 240.00093 * 25 23 21 29 29 C 1.35380 * 126.13148 * 90.00070 * 3 2 1 30 30 H 1.09000 * 109.47529 * 299.99576 * 1 2 3 31 31 H 1.09006 * 109.47622 * 59.99909 * 1 2 3 32 32 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46992 * 239.99880 * 2 1 3 34 34 H 1.08997 * 109.47045 * 120.00118 * 2 1 3 35 35 H 1.08006 * 125.50087 * 0.02562 * 4 3 2 36 36 H 0.97001 * 120.00108 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47031 * 60.00509 * 12 10 9 38 38 H 1.09002 * 109.46818 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47281 * 299.99657 * 12 10 9 40 40 H 1.09001 * 109.47002 * 299.99574 * 15 13 10 41 41 H 1.08993 * 109.46955 * 60.00011 * 15 13 10 42 42 H 1.09000 * 109.47050 * 179.97438 * 15 13 10 43 43 H 1.00900 * 110.99581 * 31.04993 * 16 13 10 44 44 H 1.09002 * 109.47300 * 300.00868 * 17 16 13 45 45 H 1.09006 * 109.46967 * 60.00497 * 17 16 13 46 46 H 0.97006 * 120.00439 * 359.97438 * 20 18 17 47 47 H 0.97002 * 119.99553 * 179.97438 * 24 23 21 48 48 H 1.07992 * 126.56508 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2853 2.1365 -1.0971 5 7 2.6951 3.3110 -0.7137 6 6 2.7136 3.3480 0.6433 7 6 3.1176 4.4930 1.4778 8 8 3.0851 4.4032 2.6903 9 7 3.5232 5.6399 0.8976 10 6 3.9244 6.7786 1.7274 11 1 4.4204 6.4153 2.6276 12 6 2.6852 7.5863 2.1185 13 6 4.8865 7.6699 0.9395 14 1 5.8068 7.1218 0.7375 15 6 4.2355 8.0785 -0.3835 16 7 5.1949 8.8722 1.7253 17 6 6.4929 9.4381 1.3341 18 6 6.7746 10.6667 2.1601 19 8 5.9732 11.0344 2.9930 20 7 7.9171 11.3569 1.9732 21 6 8.1736 12.4743 2.7250 22 1 7.4600 12.8017 3.4667 23 6 9.3517 13.1856 2.5327 24 7 10.2201 12.7869 1.6307 25 14 9.7010 14.7085 3.5565 26 1 8.5742 14.9431 4.4949 27 1 10.9541 14.5095 4.3282 28 1 9.8525 15.8832 2.6607 29 6 2.2844 2.1338 1.0934 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1715 1.8158 -2.1222 36 1 3.5495 5.7113 -0.0694 37 1 1.9999 6.9512 2.6798 38 1 2.9838 8.4338 2.7355 39 1 2.1894 7.9495 1.2184 40 1 4.0067 7.1865 -0.9666 41 1 3.3153 8.6266 -0.1815 42 1 4.9208 8.7139 -0.9446 43 1 5.1702 8.6738 2.7143 44 1 7.2768 8.6997 1.5026 45 1 6.4684 9.7075 0.2782 46 1 8.5582 11.0626 1.3074 47 1 11.0424 13.2837 1.4962 48 1 2.1769 1.8311 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329171715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:18 Heat of formation + Delta-G solvation = -12.578990 kcal Electronic energy + Delta-G solvation = -28238.170918 eV Core-core repulsion = 24136.152990 eV Total energy + Delta-G solvation = -4102.017927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57907 -39.74181 -38.33923 -37.16165 -35.53604 -34.32518 -33.69935 -31.34687 -31.06780 -30.71119 -29.81433 -28.93360 -26.49271 -25.08190 -24.40251 -23.83656 -22.73381 -21.35204 -20.30054 -19.62680 -19.25044 -18.32578 -17.84280 -16.76174 -16.28008 -15.97879 -15.79751 -15.44408 -15.25429 -14.83653 -14.77549 -14.43329 -14.32298 -14.20640 -13.93875 -13.80640 -13.56649 -13.28972 -13.03360 -12.81662 -12.68325 -12.36409 -12.09518 -12.08962 -11.92196 -11.70015 -11.52712 -11.33565 -11.06101 -10.81201 -10.67741 -10.55138 -10.30538 -10.22587 -10.18136 -10.10422 -9.47349 -9.16753 -8.89824 -8.39555 -8.03099 -7.91036 -6.37361 -3.77890 1.28902 2.08549 2.14417 3.14346 3.19969 3.30267 3.37975 3.41429 3.94122 3.96489 4.06303 4.17447 4.22406 4.29294 4.42886 4.49299 4.68732 4.82409 4.89524 4.93672 4.98817 5.13249 5.23105 5.28864 5.30485 5.34641 5.55800 5.62743 5.69313 5.75069 5.86690 5.92423 6.02404 6.04273 6.07130 6.10326 6.29312 6.36551 6.52147 6.55859 6.59809 7.25562 7.31560 7.59866 7.62469 7.70143 8.11467 8.21529 8.66241 9.22735 9.59473 10.11034 10.80546 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036241 B = 0.001633 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.419811 B =17146.940277 C =17373.703220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.185 3.815 5 N -0.463 5.463 6 C -0.062 4.062 7 C 0.603 3.397 8 O -0.546 6.546 9 N -0.708 5.708 10 C 0.142 3.858 11 H 0.087 0.913 12 C -0.157 4.157 13 C 0.077 3.923 14 H 0.047 0.953 15 C -0.144 4.144 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.034 3.966 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.210 0.790 36 H 0.407 0.593 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 -28.641 -8.981 34.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.182 5.182 6 C -0.191 4.191 7 C 0.389 3.611 8 O -0.423 6.423 9 N -0.360 5.360 10 C 0.037 3.963 11 H 0.105 0.895 12 C -0.215 4.215 13 C -0.034 4.034 14 H 0.065 0.935 15 C -0.202 4.202 16 N -0.290 5.290 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.105 4.105 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.245 0.755 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.284 -27.386 -8.515 33.485 hybrid contribution 1.111 -0.785 0.281 1.389 sum -16.173 -28.170 -8.234 33.510 Atomic orbital electron populations 1.22186 0.93675 1.03523 1.03576 1.21978 0.95949 0.79253 1.05209 1.45551 1.48397 1.13207 1.06836 1.25169 1.03605 0.87412 0.93645 1.70613 1.17931 1.19271 1.10383 1.20606 1.12356 0.95592 0.90533 1.16893 0.76610 0.81239 0.86357 1.90802 1.55063 1.83080 1.13401 1.45945 1.66629 1.12436 1.11033 1.21091 0.96077 0.85299 0.93842 0.89530 1.22122 0.96966 1.00269 1.02123 1.21713 0.96772 0.90225 0.94667 0.93486 1.21882 1.01993 1.00733 0.95595 1.60200 1.31247 1.27789 1.09772 1.21737 0.89904 0.96082 1.00498 1.19803 0.83695 0.86540 0.87191 1.90526 1.47593 1.70608 1.37846 1.41867 1.17647 1.25034 1.35627 1.19763 1.03992 1.02169 1.16819 0.87857 1.25253 0.95663 0.99634 0.97440 1.69625 1.10370 1.40760 1.33637 0.85805 0.78393 0.80761 0.79408 1.19211 1.20824 1.20782 1.22597 1.02736 0.91853 0.93281 0.91587 0.91571 0.90224 0.88337 0.88610 0.77305 0.75521 0.92873 0.90017 0.92158 0.92963 0.91228 0.92134 0.82875 0.93834 0.89522 0.77482 0.91987 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.24 37.15 0.38 0.09 16 2 C 0.10 0.18 6.84 -4.04 -0.03 0.15 16 3 N -0.46 -2.62 2.73 -118.36 -0.32 -2.95 16 4 C 0.19 1.24 12.55 -89.91 -1.13 0.11 16 5 N -0.46 -4.76 11.01 -11.03 -0.12 -4.88 16 6 C -0.06 -0.70 6.98 -83.09 -0.58 -1.28 16 7 C 0.60 8.17 7.78 -12.56 -0.10 8.08 16 8 O -0.55 -8.87 16.54 5.26 0.09 -8.79 16 9 N -0.71 -8.68 4.99 -54.91 -0.27 -8.95 16 10 C 0.14 1.85 2.30 -67.93 -0.16 1.69 16 11 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 12 C -0.16 -2.08 9.02 37.16 0.34 -1.74 16 13 C 0.08 1.01 2.66 -67.71 -0.18 0.83 16 14 H 0.05 0.62 7.80 -51.93 -0.40 0.21 16 15 C -0.14 -1.71 8.93 37.16 0.33 -1.38 16 16 N -0.66 -10.78 5.14 -107.98 -0.55 -11.34 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 19 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 20 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.03 0.29 11.26 -16.64 -0.19 0.11 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 33 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.21 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.41 4.53 6.29 -40.82 -0.26 4.28 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.17 7.17 -51.93 -0.37 0.80 16 39 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 40 H 0.05 0.52 6.29 -51.93 -0.33 0.19 16 41 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 42 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 43 H 0.35 6.04 7.61 -39.29 -0.30 5.74 16 44 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 45 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -35.61 400.05 -8.23 -43.84 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.14 Total: 15.42 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.67 Total: 9.97 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.61 Total: -66.91 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.17 Total: -24.72 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.61 -8.23 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.265 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds