Wall clock time and date at job start Tue Mar 31 2020 20:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47042 * 2 1 4 4 C 1.35842 * 126.13572 * 270.00000 * 3 2 1 5 5 N 1.30174 * 109.00578 * 179.76264 * 4 3 2 6 6 C 1.35763 * 108.86093 * 0.38291 * 5 4 3 7 7 C 1.47326 * 126.23419 * 179.88279 * 6 5 4 8 8 O 1.21618 * 119.99864 * 179.68713 * 7 6 5 9 9 N 1.34779 * 119.99799 * 359.68962 * 7 6 5 10 10 C 1.46502 * 119.99830 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46958 * 35.00331 * 10 9 7 12 12 C 1.53000 * 109.46861 * 274.99901 * 10 9 7 13 13 C 1.52997 * 109.47004 * 154.99864 * 10 9 7 14 14 H 1.09001 * 109.47502 * 295.00420 * 13 10 9 15 15 C 1.53006 * 109.47127 * 55.00263 * 13 10 9 16 16 N 1.46902 * 109.47094 * 174.99641 * 13 10 9 17 17 C 1.46904 * 110.99949 * 154.99749 * 16 13 10 18 18 C 1.50702 * 109.47107 * 180.02562 * 17 16 13 19 19 O 1.21292 * 119.99798 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99799 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99979 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99611 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00079 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47013 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47056 * 120.00083 * 25 23 21 28 28 H 1.48504 * 109.47395 * 240.00093 * 25 23 21 29 29 C 1.35380 * 126.13148 * 90.00070 * 3 2 1 30 30 H 1.09000 * 109.47529 * 299.99576 * 1 2 3 31 31 H 1.09006 * 109.47622 * 59.99909 * 1 2 3 32 32 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46992 * 239.99880 * 2 1 3 34 34 H 1.08997 * 109.47045 * 120.00118 * 2 1 3 35 35 H 1.08006 * 125.50087 * 0.02562 * 4 3 2 36 36 H 0.97001 * 120.00108 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47031 * 60.00509 * 12 10 9 38 38 H 1.09002 * 109.46818 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47281 * 299.99657 * 12 10 9 40 40 H 1.09001 * 109.47002 * 299.99574 * 15 13 10 41 41 H 1.08993 * 109.46955 * 60.00011 * 15 13 10 42 42 H 1.09000 * 109.47050 * 179.97438 * 15 13 10 43 43 H 1.00900 * 110.99581 * 31.04993 * 16 13 10 44 44 H 1.09002 * 109.47300 * 300.00868 * 17 16 13 45 45 H 1.09006 * 109.46967 * 60.00497 * 17 16 13 46 46 H 0.97006 * 120.00439 * 359.97438 * 20 18 17 47 47 H 0.97002 * 119.99553 * 179.97438 * 24 23 21 48 48 H 1.07992 * 126.56508 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2853 2.1365 -1.0971 5 7 2.6951 3.3110 -0.7137 6 6 2.7136 3.3480 0.6433 7 6 3.1176 4.4930 1.4778 8 8 3.0851 4.4032 2.6903 9 7 3.5232 5.6399 0.8976 10 6 3.9244 6.7786 1.7274 11 1 4.4204 6.4153 2.6276 12 6 2.6852 7.5863 2.1185 13 6 4.8865 7.6699 0.9395 14 1 5.8068 7.1218 0.7375 15 6 4.2355 8.0785 -0.3835 16 7 5.1949 8.8722 1.7253 17 6 6.4929 9.4381 1.3341 18 6 6.7746 10.6667 2.1601 19 8 5.9732 11.0344 2.9930 20 7 7.9171 11.3569 1.9732 21 6 8.1736 12.4743 2.7250 22 1 7.4600 12.8017 3.4667 23 6 9.3517 13.1856 2.5327 24 7 10.2201 12.7869 1.6307 25 14 9.7010 14.7085 3.5565 26 1 8.5742 14.9431 4.4949 27 1 10.9541 14.5095 4.3282 28 1 9.8525 15.8832 2.6607 29 6 2.2844 2.1338 1.0934 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1715 1.8158 -2.1222 36 1 3.5495 5.7113 -0.0694 37 1 1.9999 6.9512 2.6798 38 1 2.9838 8.4338 2.7355 39 1 2.1894 7.9495 1.2184 40 1 4.0067 7.1865 -0.9666 41 1 3.3153 8.6266 -0.1815 42 1 4.9208 8.7139 -0.9446 43 1 5.1702 8.6738 2.7143 44 1 7.2768 8.6997 1.5026 45 1 6.4684 9.7075 0.2782 46 1 8.5582 11.0626 1.3074 47 1 11.0424 13.2837 1.4962 48 1 2.1769 1.8311 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329171715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:17 Heat of formation + Delta-G solvation = -38.647346 kcal Electronic energy + Delta-G solvation = -28239.301326 eV Core-core repulsion = 24136.152990 eV Total energy + Delta-G solvation = -4103.148336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.15346 -40.81680 -40.10864 -38.46062 -36.04841 -35.93127 -35.26505 -33.26823 -32.21864 -31.25061 -30.58454 -29.92730 -28.13422 -26.19727 -25.66978 -24.52781 -23.69500 -21.83798 -21.19305 -21.11409 -20.70589 -19.91891 -19.01054 -17.83781 -17.32132 -17.25243 -16.73851 -16.66959 -16.45171 -16.09443 -15.80022 -15.60712 -15.38136 -15.25044 -14.95633 -14.78013 -14.62171 -14.39176 -14.24453 -13.74824 -13.53232 -13.45176 -13.39870 -13.08721 -13.06564 -12.96727 -12.83921 -12.52543 -12.38901 -12.21021 -12.10762 -11.94484 -11.67972 -11.50221 -11.37408 -11.07157 -10.75060 -10.34477 -10.16653 -10.00199 -9.60558 -9.37771 -8.45790 -5.94348 0.56384 1.37325 1.42473 1.45631 1.56872 1.69220 2.06257 2.18747 2.32129 2.53336 2.97809 3.21549 3.41724 3.51246 3.64393 3.78840 3.91008 3.93870 4.11235 4.16191 4.20762 4.31779 4.42616 4.43642 4.46990 4.48048 4.59431 4.65139 4.71150 4.82586 4.84750 4.85433 4.98408 5.02728 5.13054 5.24294 5.27706 5.42301 5.43829 5.48817 5.49519 5.88730 6.09475 6.12658 6.34030 6.49418 6.61240 6.87435 7.13821 7.23669 7.57328 8.12767 8.71884 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036241 B = 0.001633 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.419811 B =17146.940277 C =17373.703220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.197 3.803 5 N -0.496 5.496 6 C -0.099 4.099 7 C 0.598 3.402 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.149 3.851 11 H 0.070 0.930 12 C -0.148 4.148 13 C 0.084 3.916 14 H 0.056 0.944 15 C -0.141 4.141 16 N -0.666 5.666 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.040 3.960 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.414 0.586 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.344 0.656 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 -30.551 -10.908 36.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.088 4.088 5 N -0.215 5.215 6 C -0.227 4.227 7 C 0.386 3.614 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.043 3.957 11 H 0.088 0.912 12 C -0.206 4.206 13 C -0.026 4.026 14 H 0.074 0.926 15 C -0.198 4.198 16 N -0.299 5.299 17 C -0.067 4.067 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.101 4.101 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.266 0.734 36 H 0.253 0.747 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.163 0.837 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.383 -29.333 -10.501 35.677 hybrid contribution 1.068 -0.328 0.829 1.391 sum -16.315 -29.661 -9.672 35.206 Atomic orbital electron populations 1.22166 0.93527 1.04420 1.02510 1.22339 0.95956 0.77173 1.07227 1.45803 1.47168 1.14307 1.05698 1.25952 1.01216 0.86388 0.95206 1.70537 1.19740 1.21454 1.09740 1.20417 1.15189 0.95828 0.91267 1.17302 0.75919 0.81940 0.86224 1.90767 1.56848 1.83816 1.15018 1.45828 1.66244 1.11929 1.11160 1.20900 0.95774 0.85516 0.93478 0.91223 1.22021 0.96951 0.99576 1.02085 1.21718 0.97179 0.89030 0.94692 0.92590 1.21867 1.01480 1.01670 0.94823 1.60224 1.30351 1.29608 1.09747 1.21597 0.91337 0.93679 1.00093 1.20832 0.82371 0.87444 0.86712 1.90496 1.48639 1.71992 1.39651 1.41924 1.18450 1.24942 1.35737 1.19716 1.04611 1.04123 1.17882 0.90343 1.26028 0.94897 1.02033 0.98260 1.69681 1.10622 1.41701 1.34117 0.84871 0.78134 0.77371 0.77945 1.19855 1.19620 1.19554 1.22750 1.01527 0.91431 0.94439 0.93322 0.91938 0.88354 0.85504 0.87505 0.73409 0.74704 0.93733 0.91325 0.91321 0.90777 0.91867 0.92094 0.83663 0.91718 0.87498 0.76969 0.91324 0.78839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.16 10.24 71.98 0.74 0.57 16 2 C 0.09 0.05 6.84 86.38 0.59 0.64 16 3 N -0.45 -4.13 2.73 -528.39 -1.44 -5.57 16 4 C 0.20 2.12 12.55 180.10 2.26 4.38 16 5 N -0.50 -9.55 11.01 -188.81 -2.08 -11.63 16 6 C -0.10 -2.23 6.98 40.50 0.28 -1.95 16 7 C 0.60 16.60 7.78 86.63 0.67 17.28 16 8 O -0.58 -19.81 16.54 -4.09 -0.07 -19.87 16 9 N -0.70 -17.14 4.99 -445.89 -2.22 -19.36 16 10 C 0.15 3.93 2.30 44.99 0.10 4.03 16 11 H 0.07 2.10 7.58 -2.38 -0.02 2.08 16 12 C -0.15 -4.04 9.02 71.98 0.65 -3.39 16 13 C 0.08 2.14 2.66 44.92 0.12 2.26 16 14 H 0.06 1.37 7.80 -2.39 -0.02 1.35 16 15 C -0.14 -3.12 8.93 71.98 0.64 -2.48 16 16 N -0.67 -21.75 5.14 -495.54 -2.55 -24.29 16 17 C 0.07 2.30 5.97 85.56 0.51 2.81 16 18 C 0.44 21.38 7.82 87.66 0.69 22.07 16 19 O -0.62 -35.23 15.78 -3.07 -0.05 -35.28 16 20 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 21 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 25 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 C 0.04 0.65 11.26 83.72 0.94 1.59 16 30 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.25 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.41 8.90 6.29 -92.71 -0.58 8.31 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 2.05 7.17 -2.39 -0.02 2.03 16 39 H 0.07 1.73 6.56 -2.39 -0.02 1.71 16 40 H 0.07 1.32 6.29 -2.39 -0.02 1.30 16 41 H 0.06 1.50 6.56 -2.39 -0.02 1.48 16 42 H 0.06 1.37 7.45 -2.39 -0.02 1.35 16 43 H 0.34 12.10 7.61 -89.69 -0.68 11.42 16 44 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 45 H 0.11 3.38 7.44 -2.38 -0.02 3.36 16 46 H 0.40 19.68 7.90 -92.70 -0.73 18.94 16 47 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 48 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -79.36 400.05 0.78 -78.58 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.99 Total: 44.25 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 9.48 Total: 29.09 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -9.63 Total: -142.52 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.12 Total: -55.15 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.36 0.78 -78.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.933 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds