Wall clock time and date at job start Tue Mar 31 2020 20:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47171 * 2 1 4 4 C 1.35844 * 126.13467 * 269.99812 * 3 2 1 5 5 N 1.30175 * 108.99999 * 179.76349 * 4 3 2 6 6 C 1.35758 * 108.86642 * 0.38531 * 5 4 3 7 7 C 1.47326 * 126.23469 * 179.88840 * 6 5 4 8 8 O 1.21626 * 119.99862 * 179.68827 * 7 6 5 9 9 N 1.34780 * 119.99990 * 359.68239 * 7 6 5 10 10 C 1.46492 * 119.99930 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47696 * 325.00239 * 10 9 7 12 12 C 1.53006 * 109.47457 * 85.00142 * 10 9 7 13 13 C 1.53002 * 109.47204 * 204.99895 * 10 9 7 14 14 H 1.09002 * 109.47070 * 300.00167 * 13 10 9 15 15 C 1.52997 * 109.46817 * 59.99987 * 13 10 9 16 16 N 1.46899 * 109.47394 * 180.02562 * 13 10 9 17 17 C 1.46894 * 111.00220 * 155.00114 * 16 13 10 18 18 C 1.50694 * 109.47381 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00187 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00497 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00594 * 180.02562 * 20 18 17 22 22 H 1.08008 * 119.99964 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00381 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99519 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47277 * 89.99959 * 25 23 21 27 27 H 1.48496 * 109.46999 * 209.99808 * 25 23 21 28 28 H 1.48502 * 109.47051 * 329.99794 * 25 23 21 29 29 C 1.35381 * 126.13328 * 90.00177 * 3 2 1 30 30 H 1.08998 * 109.47215 * 59.99888 * 1 2 3 31 31 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47112 * 300.00205 * 1 2 3 33 33 H 1.09001 * 109.47112 * 239.99795 * 2 1 3 34 34 H 1.08998 * 109.47215 * 120.00112 * 2 1 3 35 35 H 1.07993 * 125.50028 * 359.97438 * 4 3 2 36 36 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47165 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46726 * 300.00014 * 12 10 9 39 39 H 1.09002 * 109.46589 * 59.99419 * 12 10 9 40 40 H 1.08996 * 109.47853 * 300.00202 * 15 13 10 41 41 H 1.09002 * 109.47153 * 60.00231 * 15 13 10 42 42 H 1.08998 * 109.47533 * 179.97438 * 15 13 10 43 43 H 1.00904 * 110.99838 * 31.04642 * 16 13 10 44 44 H 1.08998 * 109.47346 * 299.99916 * 17 16 13 45 45 H 1.09007 * 109.47035 * 60.00148 * 17 16 13 46 46 H 0.97005 * 119.99767 * 359.97438 * 20 18 17 47 47 H 0.97002 * 119.99603 * 180.02562 * 24 23 21 48 48 H 1.08004 * 126.55949 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2854 2.1365 -1.0971 5 7 2.6953 3.3110 -0.7136 6 6 2.7138 3.3480 0.6433 7 6 3.1178 4.4929 1.4778 8 8 3.0853 4.4031 2.6903 9 7 3.5234 5.6398 0.8976 10 6 3.9256 6.7781 1.7274 11 1 3.3105 6.8075 2.6269 12 6 5.3967 6.6284 2.1203 13 6 3.7379 8.0757 0.9388 14 1 4.3530 8.0464 0.0394 15 6 2.2669 8.2255 0.5459 16 7 4.1418 9.2172 1.7706 17 6 4.5454 10.3584 0.9385 18 6 4.9514 11.5076 1.8246 19 8 4.9082 11.3880 3.0309 20 7 5.3615 12.6688 1.2770 21 6 5.7313 13.7142 2.0831 22 1 5.6937 13.6074 3.1573 23 6 6.1546 14.9111 1.5185 24 7 6.2009 15.0409 0.2116 25 14 6.6578 16.3357 2.6170 26 1 8.1112 16.2466 2.9085 27 1 6.3691 17.6186 1.9272 28 1 5.8932 16.2743 3.8885 29 6 2.2845 2.1339 1.0934 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1724 1.8155 -2.1220 36 1 3.5490 5.7115 -0.0694 37 1 5.6960 7.4756 2.7374 38 1 5.5304 5.7040 2.6822 39 1 6.0117 6.5991 1.2209 40 1 1.9675 7.3786 -0.0715 41 1 1.6518 8.2548 1.4453 42 1 2.1330 9.1501 -0.0155 43 1 4.8785 8.9566 2.4090 44 1 5.3872 10.0694 0.3091 45 1 3.7091 10.6631 0.3092 46 1 5.3957 12.7646 0.3123 47 1 6.4967 15.8763 -0.1826 48 1 2.1771 1.8311 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329171716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:21 Heat of formation + Delta-G solvation = -14.147101 kcal Electronic energy + Delta-G solvation = -28241.677707 eV Core-core repulsion = 24139.591781 eV Total energy + Delta-G solvation = -4102.085926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58029 -39.72302 -38.34356 -37.10564 -35.53532 -34.31849 -33.70895 -31.29950 -31.04928 -30.67182 -29.85426 -29.52676 -26.33843 -24.91654 -24.19924 -23.82076 -22.51966 -21.34616 -20.39176 -20.13395 -19.23306 -18.27740 -17.84697 -16.74365 -16.36996 -16.08145 -15.85852 -15.35675 -15.16898 -14.77684 -14.64654 -14.44762 -14.21267 -14.19475 -13.81654 -13.79023 -13.58222 -13.40798 -13.15061 -12.91283 -12.78535 -12.37904 -12.24614 -12.08654 -11.80796 -11.58980 -11.50079 -11.35689 -11.21860 -10.99643 -10.67543 -10.49255 -10.35505 -10.22621 -10.17605 -10.11383 -9.46338 -9.17893 -8.90835 -8.38872 -8.01814 -7.90971 -6.37289 -3.77810 1.28831 2.08344 2.14328 3.12125 3.21509 3.29876 3.36422 3.41344 3.94026 3.96378 4.05965 4.17856 4.22556 4.29338 4.43745 4.49162 4.66505 4.82760 4.89870 4.93919 4.96992 5.13412 5.22263 5.26250 5.30521 5.35316 5.49396 5.61928 5.63550 5.76554 5.81011 5.89414 5.98060 6.04885 6.06085 6.09956 6.25068 6.30762 6.44615 6.48297 6.58553 7.28040 7.30670 7.59708 7.61331 7.73339 8.11282 8.21104 8.66366 9.22688 9.59372 10.11136 10.80540 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038955 B = 0.001632 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.613483 B =17150.220974 C =17444.367582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.185 3.815 5 N -0.463 5.463 6 C -0.062 4.062 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.706 5.706 10 C 0.141 3.859 11 H 0.100 0.900 12 C -0.170 4.170 13 C 0.078 3.922 14 H 0.047 0.953 15 C -0.139 4.139 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.034 3.966 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.210 0.790 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 -32.300 -7.474 34.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.182 5.182 6 C -0.191 4.191 7 C 0.391 3.609 8 O -0.422 6.422 9 N -0.357 5.357 10 C 0.036 3.964 11 H 0.118 0.882 12 C -0.228 4.228 13 C -0.032 4.032 14 H 0.065 0.935 15 C -0.197 4.197 16 N -0.297 5.297 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.105 4.105 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.174 0.826 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.825 -31.479 -6.318 33.576 hybrid contribution 0.914 -0.144 -0.633 1.121 sum -8.911 -31.623 -6.951 33.581 Atomic orbital electron populations 1.22187 0.93657 1.03525 1.03604 1.21978 0.95969 0.79251 1.05183 1.45553 1.48388 1.13211 1.06841 1.25164 1.03619 0.87421 0.93639 1.70612 1.17937 1.19242 1.10379 1.20598 1.12368 0.95573 0.90527 1.16861 0.76404 0.81332 0.86346 1.90811 1.55267 1.82705 1.13372 1.45759 1.66590 1.12537 1.10797 1.21085 0.96258 0.84091 0.94925 0.88231 1.22262 0.95612 1.03056 1.01888 1.21723 0.97485 0.89263 0.94771 0.93537 1.21799 0.95129 1.01141 1.01659 1.60176 1.46324 1.04613 1.18547 1.21719 0.99568 0.91679 0.95157 1.19810 0.84183 0.84334 0.88980 1.90528 1.58574 1.82755 1.14745 1.41856 1.57791 1.10991 1.09474 1.19715 1.40297 0.90463 0.92355 0.87915 1.25251 0.97600 0.98955 0.96145 1.69614 1.47796 1.27446 1.09528 0.85858 0.78863 0.79843 0.79728 1.20464 1.20962 1.19406 1.22600 1.02725 0.91866 0.93280 0.91556 0.90226 0.91571 0.88354 0.88621 0.77330 0.75791 0.90819 0.91693 0.92506 0.92748 0.91822 0.92379 0.82620 0.93822 0.89531 0.77474 0.91933 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.24 37.16 0.38 0.09 16 2 C 0.10 0.17 6.84 -4.04 -0.03 0.14 16 3 N -0.46 -2.58 2.73 -118.36 -0.32 -2.90 16 4 C 0.19 1.22 12.55 -89.91 -1.13 0.09 16 5 N -0.46 -4.67 11.01 -11.03 -0.12 -4.80 16 6 C -0.06 -0.69 6.98 -83.09 -0.58 -1.27 16 7 C 0.60 8.04 7.78 -12.56 -0.10 7.94 16 8 O -0.54 -8.76 16.54 5.25 0.09 -8.67 16 9 N -0.71 -8.44 4.38 -54.91 -0.24 -8.68 16 10 C 0.14 1.84 2.29 -67.93 -0.16 1.68 16 11 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.17 -2.14 9.25 37.16 0.34 -1.80 16 13 C 0.08 1.04 2.28 -67.71 -0.15 0.89 16 14 H 0.05 0.58 7.80 -51.93 -0.40 0.17 16 15 C -0.14 -1.79 9.26 37.16 0.34 -1.44 16 16 N -0.66 -11.15 5.93 -108.00 -0.64 -11.79 16 17 C 0.05 0.94 5.96 -4.98 -0.03 0.91 16 18 C 0.44 10.67 7.82 -10.99 -0.09 10.59 16 19 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 20 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 25 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 29 C 0.03 0.29 11.26 -16.64 -0.19 0.10 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.41 4.38 8.10 -40.82 -0.33 4.05 16 37 H 0.07 0.96 6.21 -51.93 -0.32 0.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 43 H 0.35 6.11 5.86 -39.29 -0.23 5.88 16 44 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 45 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 46 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -35.78 403.82 -8.36 -44.14 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.32 Total: 15.30 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.62 Total: 9.80 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.66 Total: -66.93 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.17 Total: -24.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.78 -8.36 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.994 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds