Wall clock time and date at job start Tue Mar 31 2020 20:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47171 * 2 1 4 4 C 1.35844 * 126.13467 * 269.99812 * 3 2 1 5 5 N 1.30175 * 108.99999 * 179.76349 * 4 3 2 6 6 C 1.35758 * 108.86642 * 0.38531 * 5 4 3 7 7 C 1.47326 * 126.23469 * 179.88840 * 6 5 4 8 8 O 1.21626 * 119.99862 * 179.68827 * 7 6 5 9 9 N 1.34780 * 119.99990 * 359.68239 * 7 6 5 10 10 C 1.46492 * 119.99930 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47696 * 325.00239 * 10 9 7 12 12 C 1.53006 * 109.47457 * 85.00142 * 10 9 7 13 13 C 1.53002 * 109.47204 * 204.99895 * 10 9 7 14 14 H 1.09002 * 109.47070 * 300.00167 * 13 10 9 15 15 C 1.52997 * 109.46817 * 59.99987 * 13 10 9 16 16 N 1.46899 * 109.47394 * 180.02562 * 13 10 9 17 17 C 1.46894 * 111.00220 * 155.00114 * 16 13 10 18 18 C 1.50694 * 109.47381 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00187 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00497 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00594 * 180.02562 * 20 18 17 22 22 H 1.08008 * 119.99964 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00381 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99519 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47277 * 89.99959 * 25 23 21 27 27 H 1.48496 * 109.46999 * 209.99808 * 25 23 21 28 28 H 1.48502 * 109.47051 * 329.99794 * 25 23 21 29 29 C 1.35381 * 126.13328 * 90.00177 * 3 2 1 30 30 H 1.08998 * 109.47215 * 59.99888 * 1 2 3 31 31 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47112 * 300.00205 * 1 2 3 33 33 H 1.09001 * 109.47112 * 239.99795 * 2 1 3 34 34 H 1.08998 * 109.47215 * 120.00112 * 2 1 3 35 35 H 1.07993 * 125.50028 * 359.97438 * 4 3 2 36 36 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47165 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46726 * 300.00014 * 12 10 9 39 39 H 1.09002 * 109.46589 * 59.99419 * 12 10 9 40 40 H 1.08996 * 109.47853 * 300.00202 * 15 13 10 41 41 H 1.09002 * 109.47153 * 60.00231 * 15 13 10 42 42 H 1.08998 * 109.47533 * 179.97438 * 15 13 10 43 43 H 1.00904 * 110.99838 * 31.04642 * 16 13 10 44 44 H 1.08998 * 109.47346 * 299.99916 * 17 16 13 45 45 H 1.09007 * 109.47035 * 60.00148 * 17 16 13 46 46 H 0.97005 * 119.99767 * 359.97438 * 20 18 17 47 47 H 0.97002 * 119.99603 * 180.02562 * 24 23 21 48 48 H 1.08004 * 126.55949 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2854 2.1365 -1.0971 5 7 2.6953 3.3110 -0.7136 6 6 2.7138 3.3480 0.6433 7 6 3.1178 4.4929 1.4778 8 8 3.0853 4.4031 2.6903 9 7 3.5234 5.6398 0.8976 10 6 3.9256 6.7781 1.7274 11 1 3.3105 6.8075 2.6269 12 6 5.3967 6.6284 2.1203 13 6 3.7379 8.0757 0.9388 14 1 4.3530 8.0464 0.0394 15 6 2.2669 8.2255 0.5459 16 7 4.1418 9.2172 1.7706 17 6 4.5454 10.3584 0.9385 18 6 4.9514 11.5076 1.8246 19 8 4.9082 11.3880 3.0309 20 7 5.3615 12.6688 1.2770 21 6 5.7313 13.7142 2.0831 22 1 5.6937 13.6074 3.1573 23 6 6.1546 14.9111 1.5185 24 7 6.2009 15.0409 0.2116 25 14 6.6578 16.3357 2.6170 26 1 8.1112 16.2466 2.9085 27 1 6.3691 17.6186 1.9272 28 1 5.8932 16.2743 3.8885 29 6 2.2845 2.1339 1.0934 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1724 1.8155 -2.1220 36 1 3.5490 5.7115 -0.0694 37 1 5.6960 7.4756 2.7374 38 1 5.5304 5.7040 2.6822 39 1 6.0117 6.5991 1.2209 40 1 1.9675 7.3786 -0.0715 41 1 1.6518 8.2548 1.4453 42 1 2.1330 9.1501 -0.0155 43 1 4.8785 8.9566 2.4090 44 1 5.3872 10.0694 0.3091 45 1 3.7091 10.6631 0.3092 46 1 5.3957 12.7646 0.3123 47 1 6.4967 15.8763 -0.1826 48 1 2.1771 1.8311 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329171716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:20 Heat of formation + Delta-G solvation = -40.408367 kcal Electronic energy + Delta-G solvation = -28242.816481 eV Core-core repulsion = 24139.591781 eV Total energy + Delta-G solvation = -4103.224700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.14566 -40.79131 -40.11010 -38.41499 -36.03713 -35.92581 -35.26120 -33.26907 -32.08267 -31.24142 -30.91622 -30.27026 -28.02868 -25.91519 -25.57527 -24.42341 -23.48821 -21.84264 -21.47658 -21.08316 -21.02109 -19.91592 -18.95860 -17.87045 -17.47173 -17.22548 -16.79555 -16.60523 -16.41248 -15.95254 -15.71156 -15.52218 -15.43462 -15.10169 -14.89011 -14.75958 -14.61896 -14.54895 -14.16543 -14.09272 -13.54463 -13.51205 -13.44483 -13.13784 -12.96784 -12.89258 -12.68130 -12.60094 -12.40634 -12.33112 -12.20780 -12.11349 -11.62992 -11.49657 -11.37032 -11.06638 -10.74284 -10.33289 -10.17934 -10.00346 -9.60052 -9.35731 -8.45588 -5.94178 0.57459 1.38841 1.42560 1.46416 1.55451 1.69596 2.06145 2.17859 2.32266 2.54741 2.98832 3.21710 3.42734 3.51522 3.59167 3.79221 3.91519 3.96075 4.11453 4.16262 4.18684 4.31915 4.41582 4.43086 4.45642 4.47011 4.57754 4.60350 4.71009 4.72974 4.85075 4.85556 4.95476 4.99560 5.13618 5.18386 5.24576 5.36905 5.42110 5.44540 5.45350 5.90093 6.10654 6.13098 6.37829 6.50252 6.61461 6.88237 7.13817 7.25136 7.57260 8.12937 8.71787 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038955 B = 0.001632 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.613483 B =17150.220974 C =17444.367582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.196 3.804 5 N -0.495 5.495 6 C -0.098 4.098 7 C 0.600 3.400 8 O -0.583 6.583 9 N -0.696 5.696 10 C 0.149 3.851 11 H 0.073 0.927 12 C -0.163 4.163 13 C 0.085 3.915 14 H 0.068 0.932 15 C -0.135 4.135 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.039 3.961 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.346 0.654 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -33.954 -9.677 36.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.088 4.088 5 N -0.214 5.214 6 C -0.226 4.226 7 C 0.388 3.612 8 O -0.464 6.464 9 N -0.347 5.347 10 C 0.044 3.956 11 H 0.092 0.908 12 C -0.222 4.222 13 C -0.025 4.025 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.313 5.313 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.102 4.102 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.265 0.735 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.168 0.832 44 H 0.089 0.911 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.019 -33.160 -8.585 35.689 hybrid contribution 0.906 0.230 0.007 0.935 sum -9.113 -32.931 -8.578 35.229 Atomic orbital electron populations 1.22168 0.93576 1.04407 1.02498 1.22335 0.95919 0.77198 1.07222 1.45801 1.47174 1.14303 1.05711 1.25941 1.01267 0.86420 0.95184 1.70537 1.19712 1.21392 1.09731 1.20407 1.15133 0.95787 0.91245 1.17257 0.75712 0.82026 0.86180 1.90776 1.57089 1.83464 1.15052 1.45626 1.66188 1.11931 1.10956 1.20865 0.96028 0.84566 0.94185 0.90842 1.22190 0.95511 1.02239 1.02247 1.21722 0.98034 0.87879 0.94831 0.91419 1.21773 0.94382 1.02017 1.01155 1.60164 1.46276 1.05574 1.19245 1.21584 1.01120 0.89752 0.94139 1.20857 0.82373 0.85067 0.89199 1.90498 1.59876 1.83612 1.17023 1.41907 1.58292 1.11239 1.09463 1.19677 1.42752 0.92295 0.91775 0.90398 1.26021 0.96813 1.00722 0.97581 1.69670 1.47472 1.28341 1.10514 0.84932 0.78624 0.77015 0.77781 1.19581 1.19473 1.19934 1.22751 1.01570 0.91474 0.94420 0.91958 0.88361 0.93348 0.85506 0.87492 0.73474 0.74860 0.91507 0.92589 0.91087 0.90992 0.93532 0.92160 0.83157 0.91139 0.87701 0.76912 0.91294 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.18 10.24 71.98 0.74 0.55 16 2 C 0.09 0.04 6.84 86.38 0.59 0.64 16 3 N -0.45 -4.08 2.73 -528.38 -1.44 -5.52 16 4 C 0.20 2.08 12.55 180.10 2.26 4.34 16 5 N -0.49 -9.37 11.01 -188.82 -2.08 -11.45 16 6 C -0.10 -2.16 6.98 40.50 0.28 -1.88 16 7 C 0.60 16.41 7.78 86.63 0.67 17.08 16 8 O -0.58 -19.72 16.54 -4.11 -0.07 -19.79 16 9 N -0.70 -16.65 4.38 -445.88 -1.95 -18.60 16 10 C 0.15 3.92 2.29 45.00 0.10 4.02 16 11 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 12 C -0.16 -4.16 9.25 71.98 0.67 -3.49 16 13 C 0.09 2.19 2.28 44.92 0.10 2.29 16 14 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 15 C -0.14 -3.34 9.26 71.98 0.67 -2.67 16 16 N -0.68 -22.62 5.93 -495.59 -2.94 -25.56 16 17 C 0.07 2.34 5.96 85.56 0.51 2.85 16 18 C 0.44 21.38 7.82 87.66 0.69 22.07 16 19 O -0.62 -35.66 15.78 -3.07 -0.05 -35.71 16 20 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 21 C -0.34 -19.43 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 25 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 29 C 0.04 0.63 11.26 83.72 0.94 1.58 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.13 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.25 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.41 8.58 8.10 -92.71 -0.75 7.83 16 37 H 0.07 1.79 6.21 -2.39 -0.01 1.77 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.51 7.45 -2.39 -0.02 1.49 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 43 H 0.35 12.18 5.86 -89.69 -0.53 11.66 16 44 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 45 H 0.10 3.35 7.44 -2.38 -0.02 3.33 16 46 H 0.40 19.59 7.90 -92.70 -0.73 18.86 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 48 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -79.96 403.82 0.65 -79.30 By element: Atomic # 1 Polarization: 45.32 SS G_CDS: -1.01 Total: 44.32 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 9.50 Total: 28.60 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -9.75 Total: -142.40 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -0.12 Total: -55.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -79.96 0.65 -79.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.893 kcal (2) G-P(sol) polarization free energy of solvation -79.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds