Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47037 * 2 1 4 4 C 1.35844 * 126.13392 * 269.99787 * 3 2 1 5 5 N 1.30177 * 109.00148 * 179.75912 * 4 3 2 6 6 C 1.35754 * 108.86693 * 0.38940 * 5 4 3 7 7 C 1.47324 * 126.23689 * 179.88247 * 6 5 4 8 8 O 1.21626 * 120.00156 * 179.68840 * 7 6 5 9 9 N 1.34781 * 119.99940 * 359.68329 * 7 6 5 10 10 C 1.46498 * 119.99897 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46828 * 324.99784 * 10 9 7 12 12 C 1.52999 * 109.47374 * 85.00092 * 10 9 7 13 13 C 1.53006 * 109.46687 * 204.99896 * 10 9 7 14 14 H 1.09000 * 109.47050 * 64.99953 * 13 10 9 15 15 C 1.52997 * 109.47164 * 304.99949 * 13 10 9 16 16 N 1.46902 * 109.46626 * 184.99777 * 13 10 9 17 17 C 1.46901 * 110.99865 * 205.00058 * 16 13 10 18 18 C 1.50697 * 109.47446 * 180.02562 * 17 16 13 19 19 O 1.21296 * 119.99612 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99663 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00203 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00373 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99867 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47089 * 90.00150 * 25 23 21 27 27 H 1.48493 * 109.47202 * 210.00082 * 25 23 21 28 28 H 1.48499 * 109.47002 * 329.99946 * 25 23 21 29 29 C 1.35382 * 126.13259 * 89.99867 * 3 2 1 30 30 H 1.09004 * 109.46938 * 300.00324 * 1 2 3 31 31 H 1.09002 * 109.47290 * 59.99541 * 1 2 3 32 32 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47242 * 240.00262 * 2 1 3 34 34 H 1.08998 * 109.47017 * 119.99560 * 2 1 3 35 35 H 1.08003 * 125.50190 * 0.02562 * 4 3 2 36 36 H 0.96993 * 119.99582 * 0.02562 * 9 7 6 37 37 H 1.08995 * 109.47070 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47069 * 299.99712 * 12 10 9 39 39 H 1.09001 * 109.47018 * 59.99724 * 12 10 9 40 40 H 1.09002 * 109.46777 * 180.02562 * 15 13 10 41 41 H 1.09000 * 109.47140 * 299.99948 * 15 13 10 42 42 H 1.09001 * 109.47375 * 59.99966 * 15 13 10 43 43 H 1.00897 * 110.99993 * 328.95287 * 16 13 10 44 44 H 1.09005 * 109.47362 * 300.00272 * 17 16 13 45 45 H 1.09000 * 109.47455 * 59.99836 * 17 16 13 46 46 H 0.96994 * 119.99986 * 359.97438 * 20 18 17 47 47 H 0.97002 * 120.00276 * 180.02562 * 24 23 21 48 48 H 1.07990 * 126.56718 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2854 2.1365 -1.0971 5 7 2.6951 3.3111 -0.7137 6 6 2.7137 3.3481 0.6432 7 6 3.1176 4.4931 1.4777 8 8 3.0852 4.4033 2.6902 9 7 3.5232 5.6400 0.8975 10 6 3.9254 6.7783 1.7273 11 1 3.3103 6.8076 2.6267 12 6 5.3965 6.6286 2.1202 13 6 3.7377 8.0759 0.9385 14 1 2.6776 8.2274 0.7353 15 6 4.5024 7.9842 -0.3835 16 7 4.2520 9.2054 1.7245 17 6 3.5982 10.4609 1.3320 18 6 4.1505 11.5944 2.1573 19 8 5.0045 11.3775 2.9909 20 7 3.6948 12.8488 1.9699 21 6 4.1977 13.8801 2.7204 22 1 4.9587 13.6871 3.4620 23 6 3.7284 15.1735 2.5268 24 7 4.2100 16.1619 3.2465 25 14 2.4126 15.5073 1.2435 26 1 1.0704 15.3793 1.8659 27 1 2.5808 16.8822 0.7082 28 1 2.5406 14.5259 0.1364 29 6 2.2844 2.1339 1.0934 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1716 1.8158 -2.1222 36 1 3.5488 5.7116 -0.0694 37 1 5.6956 7.4753 2.7379 38 1 5.5303 5.7042 2.6821 39 1 6.0116 6.5993 1.2207 40 1 4.3690 8.9088 -0.9452 41 1 5.5625 7.8327 -0.1803 42 1 4.1208 7.1461 -0.9666 43 1 4.1455 9.0360 2.7134 44 1 3.7877 10.6547 0.2762 45 1 2.5242 10.3790 1.4992 46 1 3.0116 13.0222 1.3036 47 1 3.8821 17.0648 3.1116 48 1 2.1777 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329171717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -5.323739 kcal Electronic energy + Delta-G solvation = -28308.351827 eV Core-core repulsion = 24206.648511 eV Total energy + Delta-G solvation = -4101.703316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60828 -39.79023 -38.50890 -37.26235 -35.56185 -34.39459 -33.76581 -31.65511 -31.25828 -30.76230 -29.87136 -28.99065 -26.68024 -25.11767 -24.36675 -23.77776 -22.72663 -21.38089 -20.34148 -19.69195 -19.36293 -18.50880 -18.18774 -16.77049 -16.28978 -16.08809 -15.82402 -15.48345 -15.33386 -14.99267 -14.72983 -14.56320 -14.53660 -14.22595 -13.99340 -13.72855 -13.51139 -13.22913 -13.08554 -12.84047 -12.75618 -12.46200 -12.29902 -12.11106 -12.03008 -11.99536 -11.80166 -11.44876 -11.16869 -10.88622 -10.71629 -10.60778 -10.56082 -10.25436 -10.14412 -9.93669 -9.53066 -9.20565 -8.93362 -8.53136 -8.16513 -8.10939 -6.27144 -3.78393 1.25906 2.05342 2.11656 3.06008 3.09307 3.10385 3.18070 3.37948 3.79267 3.91860 4.02799 4.13501 4.20183 4.22104 4.26983 4.47026 4.62662 4.78731 4.84458 4.87165 4.91744 5.02139 5.11061 5.22233 5.25817 5.32935 5.50199 5.59854 5.60052 5.65125 5.75496 5.84737 5.90150 5.96734 5.98117 6.01140 6.06790 6.28757 6.47722 6.51476 6.56489 7.13202 7.27509 7.58360 7.60043 7.62974 8.17709 8.18984 8.64127 8.99291 9.46799 9.87441 10.86045 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.001752 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.165440 B =15979.519565 C =16390.754041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.185 3.815 5 N -0.464 5.464 6 C -0.062 4.062 7 C 0.603 3.397 8 O -0.545 6.545 9 N -0.708 5.708 10 C 0.142 3.858 11 H 0.087 0.913 12 C -0.157 4.157 13 C 0.077 3.923 14 H 0.047 0.953 15 C -0.145 4.145 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.035 3.965 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.210 0.790 36 H 0.407 0.593 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.353 0.647 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -34.650 -12.717 37.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.182 5.182 6 C -0.191 4.191 7 C 0.389 3.611 8 O -0.423 6.423 9 N -0.361 5.361 10 C 0.037 3.963 11 H 0.105 0.895 12 C -0.215 4.215 13 C -0.034 4.034 14 H 0.065 0.935 15 C -0.202 4.202 16 N -0.290 5.290 17 C -0.085 4.085 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.104 4.104 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.245 0.755 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.173 0.827 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.640 -33.960 -12.137 36.864 hybrid contribution -2.246 -0.294 -0.735 2.382 sum -9.887 -34.254 -12.871 37.904 Atomic orbital electron populations 1.22187 0.93661 1.03544 1.03584 1.21982 0.95961 0.79230 1.05213 1.45555 1.48364 1.13219 1.06834 1.25167 1.03600 0.87412 0.93648 1.70605 1.17961 1.19279 1.10385 1.20596 1.12395 0.95593 0.90531 1.16896 0.76402 0.81426 0.86362 1.90808 1.55337 1.82744 1.13390 1.45937 1.66567 1.12572 1.11013 1.21086 0.97265 0.84140 0.93819 0.89494 1.22127 0.94662 1.02598 1.02143 1.21716 0.97211 0.89760 0.94675 0.93476 1.21886 1.01616 1.01193 0.95551 1.60182 1.59096 0.99851 1.09895 1.21770 0.95991 0.90249 1.00496 1.19698 0.86169 0.83379 0.87069 1.90570 1.33596 1.83336 1.36963 1.42203 1.37671 1.07205 1.36034 1.19439 1.21601 0.85050 1.17205 0.86266 1.25029 0.98055 0.95324 0.97746 1.69621 1.42575 1.00310 1.39720 0.86674 0.82334 0.78772 0.81629 1.19700 1.20209 1.19470 1.22604 1.02692 0.91846 0.93292 0.91586 0.91568 0.90203 0.88330 0.88596 0.77308 0.75533 0.89988 0.92811 0.92130 0.92197 0.91128 0.92899 0.82683 0.89403 0.93701 0.79720 0.91661 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.26 10.24 37.16 0.38 0.12 16 2 C 0.10 0.16 6.84 -4.04 -0.03 0.13 16 3 N -0.46 -2.50 2.73 -118.36 -0.32 -2.83 16 4 C 0.19 1.18 12.55 -89.91 -1.13 0.05 16 5 N -0.46 -4.60 11.01 -11.03 -0.12 -4.72 16 6 C -0.06 -0.68 6.98 -83.09 -0.58 -1.26 16 7 C 0.60 7.94 7.78 -12.56 -0.10 7.84 16 8 O -0.55 -8.67 16.54 5.25 0.09 -8.59 16 9 N -0.71 -8.34 4.99 -54.91 -0.27 -8.61 16 10 C 0.14 1.77 2.30 -67.93 -0.16 1.62 16 11 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 12 C -0.16 -2.02 9.02 37.16 0.33 -1.68 16 13 C 0.08 0.96 2.66 -67.71 -0.18 0.78 16 14 H 0.05 0.57 7.80 -51.93 -0.40 0.17 16 15 C -0.14 -1.62 8.93 37.16 0.33 -1.28 16 16 N -0.66 -10.24 5.14 -107.99 -0.55 -10.80 16 17 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 18 C 0.45 10.38 7.82 -10.99 -0.09 10.29 16 19 O -0.56 -15.28 15.78 5.54 0.09 -15.19 16 20 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.89 16 22 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -26.09 13.96 55.50 0.77 -25.31 16 25 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 29 C 0.03 0.29 11.26 -16.64 -0.19 0.10 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 33 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 35 H 0.21 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.41 4.32 6.29 -40.82 -0.26 4.06 16 37 H 0.08 1.14 7.17 -51.93 -0.37 0.77 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 40 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 41 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 42 H 0.05 0.49 6.29 -51.93 -0.33 0.16 16 43 H 0.35 5.79 7.62 -39.29 -0.30 5.49 16 44 H 0.09 1.33 7.44 -51.93 -0.39 0.95 16 45 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -36.83 396.93 -7.89 -44.72 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.10 Total: 15.15 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.67 Total: 9.63 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.55 Total: -66.63 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.78 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.83 -7.89 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds