Wall clock time and date at job start Tue Mar 31 2020 20:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47037 * 2 1 4 4 C 1.35844 * 126.13392 * 269.99787 * 3 2 1 5 5 N 1.30177 * 109.00148 * 179.75912 * 4 3 2 6 6 C 1.35754 * 108.86693 * 0.38940 * 5 4 3 7 7 C 1.47324 * 126.23689 * 179.88247 * 6 5 4 8 8 O 1.21626 * 120.00156 * 179.68840 * 7 6 5 9 9 N 1.34781 * 119.99940 * 359.68329 * 7 6 5 10 10 C 1.46498 * 119.99897 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46828 * 324.99784 * 10 9 7 12 12 C 1.52999 * 109.47374 * 85.00092 * 10 9 7 13 13 C 1.53006 * 109.46687 * 204.99896 * 10 9 7 14 14 H 1.09000 * 109.47050 * 64.99953 * 13 10 9 15 15 C 1.52997 * 109.47164 * 304.99949 * 13 10 9 16 16 N 1.46902 * 109.46626 * 184.99777 * 13 10 9 17 17 C 1.46901 * 110.99865 * 205.00058 * 16 13 10 18 18 C 1.50697 * 109.47446 * 180.02562 * 17 16 13 19 19 O 1.21296 * 119.99612 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99663 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00203 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00373 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99867 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47089 * 90.00150 * 25 23 21 27 27 H 1.48493 * 109.47202 * 210.00082 * 25 23 21 28 28 H 1.48499 * 109.47002 * 329.99946 * 25 23 21 29 29 C 1.35382 * 126.13259 * 89.99867 * 3 2 1 30 30 H 1.09004 * 109.46938 * 300.00324 * 1 2 3 31 31 H 1.09002 * 109.47290 * 59.99541 * 1 2 3 32 32 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47242 * 240.00262 * 2 1 3 34 34 H 1.08998 * 109.47017 * 119.99560 * 2 1 3 35 35 H 1.08003 * 125.50190 * 0.02562 * 4 3 2 36 36 H 0.96993 * 119.99582 * 0.02562 * 9 7 6 37 37 H 1.08995 * 109.47070 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47069 * 299.99712 * 12 10 9 39 39 H 1.09001 * 109.47018 * 59.99724 * 12 10 9 40 40 H 1.09002 * 109.46777 * 180.02562 * 15 13 10 41 41 H 1.09000 * 109.47140 * 299.99948 * 15 13 10 42 42 H 1.09001 * 109.47375 * 59.99966 * 15 13 10 43 43 H 1.00897 * 110.99993 * 328.95287 * 16 13 10 44 44 H 1.09005 * 109.47362 * 300.00272 * 17 16 13 45 45 H 1.09000 * 109.47455 * 59.99836 * 17 16 13 46 46 H 0.96994 * 119.99986 * 359.97438 * 20 18 17 47 47 H 0.97002 * 120.00276 * 180.02562 * 24 23 21 48 48 H 1.07990 * 126.56718 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2854 2.1365 -1.0971 5 7 2.6951 3.3111 -0.7137 6 6 2.7137 3.3481 0.6432 7 6 3.1176 4.4931 1.4777 8 8 3.0852 4.4033 2.6902 9 7 3.5232 5.6400 0.8975 10 6 3.9254 6.7783 1.7273 11 1 3.3103 6.8076 2.6267 12 6 5.3965 6.6286 2.1202 13 6 3.7377 8.0759 0.9385 14 1 2.6776 8.2274 0.7353 15 6 4.5024 7.9842 -0.3835 16 7 4.2520 9.2054 1.7245 17 6 3.5982 10.4609 1.3320 18 6 4.1505 11.5944 2.1573 19 8 5.0045 11.3775 2.9909 20 7 3.6948 12.8488 1.9699 21 6 4.1977 13.8801 2.7204 22 1 4.9587 13.6871 3.4620 23 6 3.7284 15.1735 2.5268 24 7 4.2100 16.1619 3.2465 25 14 2.4126 15.5073 1.2435 26 1 1.0704 15.3793 1.8659 27 1 2.5808 16.8822 0.7082 28 1 2.5406 14.5259 0.1364 29 6 2.2844 2.1339 1.0934 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1716 1.8158 -2.1222 36 1 3.5488 5.7116 -0.0694 37 1 5.6956 7.4753 2.7379 38 1 5.5303 5.7042 2.6821 39 1 6.0116 6.5993 1.2207 40 1 4.3690 8.9088 -0.9452 41 1 5.5625 7.8327 -0.1803 42 1 4.1208 7.1461 -0.9666 43 1 4.1455 9.0360 2.7134 44 1 3.7877 10.6547 0.2762 45 1 2.5242 10.3790 1.4992 46 1 3.0116 13.0222 1.3036 47 1 3.8821 17.0648 3.1116 48 1 2.1777 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329171717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:22 Heat of formation + Delta-G solvation = -33.825772 kcal Electronic energy + Delta-G solvation = -28309.587768 eV Core-core repulsion = 24206.648511 eV Total energy + Delta-G solvation = -4102.939257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.15253 -40.82981 -40.23327 -38.48016 -36.08189 -35.93382 -35.28977 -33.73846 -32.25731 -31.25081 -30.59620 -29.92594 -28.26303 -26.10899 -25.58768 -24.50785 -23.67111 -21.83751 -21.29432 -21.19201 -20.70784 -20.30426 -19.00001 -17.79954 -17.34163 -17.28205 -16.79593 -16.71153 -16.56508 -16.12755 -15.70761 -15.40796 -15.38762 -15.13344 -14.99220 -14.77983 -14.62832 -14.57126 -14.37824 -14.00606 -13.72361 -13.48327 -13.44682 -13.11887 -13.07218 -12.96432 -12.86050 -12.51912 -12.40510 -12.21238 -11.96881 -11.93625 -11.67370 -11.50262 -11.37446 -11.07280 -10.74990 -10.43038 -10.23785 -10.16867 -9.60424 -9.37625 -8.40191 -6.01136 0.56426 1.31204 1.36404 1.45396 1.45671 1.69170 1.97012 2.19191 2.24115 2.53351 2.79270 3.16288 3.37969 3.45365 3.63536 3.78814 3.91017 3.93644 4.10999 4.15029 4.16654 4.22833 4.42391 4.42852 4.44090 4.48068 4.56481 4.64954 4.71024 4.82735 4.85017 4.85566 4.98765 5.03739 5.13129 5.24092 5.28441 5.43838 5.48766 5.50387 5.54517 5.90878 6.03778 6.12613 6.32334 6.49593 6.60828 6.87502 6.89195 7.24068 7.40849 7.97679 8.77491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.001752 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.165440 B =15979.519565 C =16390.754041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.197 3.803 5 N -0.495 5.495 6 C -0.098 4.098 7 C 0.598 3.402 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.148 3.852 11 H 0.070 0.930 12 C -0.149 4.149 13 C 0.085 3.915 14 H 0.061 0.939 15 C -0.142 4.142 16 N -0.671 5.671 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.230 1.230 29 C 0.039 3.961 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.415 0.585 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.344 0.656 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 -37.092 -16.749 42.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.088 4.088 5 N -0.214 5.214 6 C -0.226 4.226 7 C 0.386 3.614 8 O -0.465 6.465 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.088 0.912 12 C -0.207 4.207 13 C -0.025 4.025 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.304 5.304 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.154 1.154 29 C -0.102 4.102 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.266 0.734 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.164 0.836 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.260 -36.447 -16.218 41.191 hybrid contribution -1.367 0.313 0.584 1.520 sum -11.628 -36.133 -15.635 41.052 Atomic orbital electron populations 1.22167 0.93562 1.04409 1.02503 1.22336 0.95926 0.77193 1.07224 1.45802 1.47162 1.14302 1.05717 1.25953 1.01218 0.86401 0.95193 1.70531 1.19727 1.21425 1.09706 1.20413 1.15142 0.95813 0.91272 1.17303 0.75742 0.82150 0.86207 1.90774 1.57163 1.83499 1.15057 1.45815 1.66102 1.12032 1.11165 1.20909 0.96468 0.84829 0.93543 0.91223 1.22027 0.95292 1.01354 1.02055 1.21717 0.98085 0.88132 0.94570 0.92082 1.21880 1.00909 1.02333 0.94827 1.60206 1.59870 1.00526 1.09823 1.21698 0.97194 0.87870 1.00285 1.20943 0.84723 0.84289 0.86308 1.90552 1.35722 1.84253 1.39160 1.42015 1.38325 1.06677 1.36243 1.19019 1.21724 0.87352 1.17778 0.92708 1.26114 1.00774 0.94078 1.00370 1.69805 1.44607 1.01142 1.41976 0.85362 0.78062 0.79397 0.78687 1.18228 1.19997 1.15360 1.22752 1.01574 0.91473 0.94426 0.93355 0.91921 0.88378 0.85485 0.87524 0.73414 0.74660 0.91420 0.93867 0.91304 0.91725 0.92064 0.90804 0.83619 0.86566 0.90567 0.77467 0.91165 0.78905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.09 10.24 71.98 0.74 0.64 16 2 C 0.09 0.00 6.84 86.38 0.59 0.59 16 3 N -0.45 -3.83 2.73 -528.38 -1.44 -5.27 16 4 C 0.20 1.95 12.55 180.10 2.26 4.22 16 5 N -0.49 -9.03 11.01 -188.81 -2.08 -11.11 16 6 C -0.10 -2.12 6.98 40.51 0.28 -1.84 16 7 C 0.60 15.99 7.78 86.63 0.67 16.66 16 8 O -0.58 -19.35 16.54 -4.11 -0.07 -19.42 16 9 N -0.70 -16.16 4.99 -445.88 -2.22 -18.38 16 10 C 0.15 3.69 2.30 44.99 0.10 3.79 16 11 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 12 C -0.15 -3.93 9.02 71.98 0.65 -3.29 16 13 C 0.08 1.96 2.66 44.92 0.12 2.08 16 14 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 15 C -0.14 -2.81 8.93 71.98 0.64 -2.17 16 16 N -0.67 -20.31 5.14 -495.56 -2.55 -22.85 16 17 C 0.06 1.93 5.96 85.56 0.51 2.44 16 18 C 0.45 20.68 7.82 87.66 0.69 21.36 16 19 O -0.61 -34.64 15.78 -3.08 -0.05 -34.69 16 20 N -0.59 -28.33 5.09 -306.99 -1.56 -29.89 16 21 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 22 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.93 -57.13 13.96 21.66 0.30 -56.83 16 25 Si 0.97 39.30 27.74 68.60 1.90 41.20 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 29 C 0.04 0.61 11.26 83.72 0.94 1.55 16 30 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.25 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.41 8.26 6.29 -92.71 -0.58 7.68 16 37 H 0.07 1.98 7.17 -2.39 -0.02 1.96 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.67 6.56 -2.39 -0.02 1.66 16 40 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 41 H 0.06 1.35 6.56 -2.39 -0.02 1.33 16 42 H 0.07 1.16 6.29 -2.39 -0.02 1.14 16 43 H 0.34 11.46 7.62 -89.70 -0.68 10.78 16 44 H 0.12 3.05 7.44 -2.38 -0.02 3.03 16 45 H 0.08 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.39 15.43 5.76 -92.71 -0.53 14.90 16 47 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.19 2.57 8.06 -2.92 -0.02 2.54 16 Total: -1.00 -87.63 396.93 0.91 -86.72 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.85 Total: 43.64 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 9.52 Total: 26.87 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -9.55 Total: -144.33 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.12 Total: -54.11 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.90 Total: 41.20 kcal Total: -87.63 0.91 -86.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.898 kcal (2) G-P(sol) polarization free energy of solvation -87.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds