Wall clock time and date at job start Tue Mar 31 2020 20:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 C 1.35842 * 126.13329 * 269.99738 * 3 2 1 5 5 N 1.30175 * 109.00116 * 179.76526 * 4 3 2 6 6 C 1.35762 * 108.86665 * 0.37790 * 5 4 3 7 7 C 1.47325 * 126.23422 * 179.88316 * 6 5 4 8 8 O 1.21624 * 120.00111 * 179.69407 * 7 6 5 9 9 N 1.34777 * 119.99836 * 359.69262 * 7 6 5 10 10 C 1.46507 * 119.99542 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46822 * 35.00535 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00190 * 10 9 7 13 13 C 1.53002 * 109.46688 * 155.00029 * 10 9 7 14 14 H 1.09002 * 109.47070 * 60.00104 * 13 10 9 15 15 C 1.53000 * 109.47233 * 299.99730 * 13 10 9 16 16 N 1.46901 * 109.46860 * 180.02562 * 13 10 9 17 17 C 1.46903 * 110.99880 * 205.00557 * 16 13 10 18 18 C 1.50697 * 109.46959 * 180.02562 * 17 16 13 19 19 O 1.21293 * 120.00499 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00053 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99662 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00341 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00073 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47235 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46986 * 120.00408 * 25 23 21 28 28 H 1.48502 * 109.47266 * 239.99901 * 25 23 21 29 29 C 1.35374 * 126.13581 * 89.99965 * 3 2 1 30 30 H 1.09007 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47582 * 300.00217 * 1 2 3 32 32 H 1.09001 * 109.47007 * 60.00097 * 1 2 3 33 33 H 1.08996 * 109.47162 * 239.99478 * 2 1 3 34 34 H 1.09000 * 109.46843 * 119.99375 * 2 1 3 35 35 H 1.08000 * 125.50130 * 0.02562 * 4 3 2 36 36 H 0.96997 * 120.00436 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47140 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 39 39 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 40 40 H 1.09001 * 109.47194 * 179.97438 * 15 13 10 41 41 H 1.08992 * 109.47399 * 300.00166 * 15 13 10 42 42 H 1.09004 * 109.46724 * 60.00652 * 15 13 10 43 43 H 1.00904 * 110.99967 * 328.95217 * 16 13 10 44 44 H 1.09003 * 109.46525 * 299.99167 * 17 16 13 45 45 H 1.08991 * 109.47692 * 59.99249 * 17 16 13 46 46 H 0.97000 * 119.99778 * 359.97438 * 20 18 17 47 47 H 0.97003 * 119.99792 * 179.97438 * 24 23 21 48 48 H 1.08001 * 126.56649 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2853 2.1365 -1.0971 5 7 2.6951 3.3110 -0.7137 6 6 2.7136 3.3481 0.6433 7 6 3.1175 4.4931 1.4777 8 8 3.0850 4.4034 2.6902 9 7 3.5231 5.6399 0.8975 10 6 3.9243 6.7787 1.7273 11 1 4.4202 6.4154 2.6274 12 6 2.6851 7.5864 2.1184 13 6 4.8864 7.6700 0.9393 14 1 4.3905 8.0332 0.0392 15 6 6.1256 6.8622 0.5484 16 7 5.2891 8.8115 1.7716 17 6 5.6930 9.9530 0.9397 18 6 6.0990 11.1019 1.8264 19 8 6.0557 10.9820 3.0326 20 7 6.5102 12.2629 1.2790 21 6 6.8791 13.3083 2.0855 22 1 6.8397 13.2017 3.1595 23 6 7.3035 14.5051 1.5212 24 7 7.3508 14.6349 0.2144 25 14 7.8054 15.9297 2.6202 26 1 7.6624 15.5312 4.0436 27 1 9.2197 16.2908 2.3475 28 1 6.9337 17.0996 2.3432 29 6 2.2843 2.1339 1.0933 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.1716 1.8157 -2.1221 36 1 3.5494 5.7114 -0.0695 37 1 2.9837 8.4339 2.7354 38 1 2.1892 7.9496 1.2182 39 1 1.9997 6.9514 2.6796 40 1 6.8108 7.4971 -0.0134 41 1 6.6214 6.4991 1.4485 42 1 5.8270 6.0150 -0.0691 43 1 4.5519 9.0719 2.4095 44 1 6.5354 9.6643 0.3112 45 1 4.8572 10.2573 0.3099 46 1 6.5451 12.3587 0.3143 47 1 7.6468 15.4705 -0.1796 48 1 2.1769 1.8313 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329171718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:26 Heat of formation + Delta-G solvation = -14.191315 kcal Electronic energy + Delta-G solvation = -28235.680313 eV Core-core repulsion = 24133.592470 eV Total energy + Delta-G solvation = -4102.087843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58099 -39.72316 -38.34462 -37.10610 -35.53711 -34.31864 -33.70992 -31.30020 -31.05030 -30.67274 -29.85391 -29.52774 -26.33925 -24.91783 -24.20112 -23.82226 -22.52035 -21.34619 -20.39189 -20.13446 -19.23451 -18.27593 -17.84873 -16.76144 -16.39964 -15.99016 -15.87020 -15.36698 -15.18401 -14.91612 -14.49953 -14.45643 -14.21636 -14.19621 -13.82321 -13.78561 -13.58685 -13.40647 -13.17575 -12.90708 -12.78328 -12.38181 -12.24642 -12.09131 -11.80805 -11.59120 -11.50371 -11.35638 -11.22074 -11.01464 -10.67568 -10.49283 -10.30569 -10.22704 -10.18314 -10.11454 -9.47518 -9.17947 -8.90848 -8.38980 -8.01969 -7.91018 -6.37464 -3.77955 1.28826 2.08426 2.14176 3.12095 3.19903 3.30254 3.38022 3.41328 3.93961 3.96233 4.05935 4.17790 4.22195 4.29149 4.43738 4.49168 4.66433 4.82472 4.89486 4.93425 4.96970 5.13341 5.22205 5.26200 5.30367 5.34356 5.49328 5.61859 5.63515 5.76477 5.81041 5.89375 5.98038 6.04835 6.06092 6.09945 6.24982 6.30676 6.44608 6.48246 6.58516 7.27968 7.30637 7.59831 7.61324 7.73244 8.11424 8.21088 8.66223 9.22671 9.59310 10.10983 10.80432 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.001627 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.323019 B =17202.083663 C =17499.089189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.185 3.815 5 N -0.463 5.463 6 C -0.062 4.062 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.706 5.706 10 C 0.141 3.859 11 H 0.100 0.900 12 C -0.170 4.170 13 C 0.078 3.922 14 H 0.047 0.953 15 C -0.139 4.139 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.034 3.966 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.210 0.790 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.351 0.649 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 -30.778 -7.462 34.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.182 5.182 6 C -0.191 4.191 7 C 0.391 3.609 8 O -0.422 6.422 9 N -0.357 5.357 10 C 0.036 3.964 11 H 0.118 0.882 12 C -0.228 4.228 13 C -0.033 4.033 14 H 0.065 0.935 15 C -0.197 4.197 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.105 4.105 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.928 -30.411 -6.300 33.640 hybrid contribution -0.805 0.470 -0.647 1.134 sum -13.733 -29.941 -6.947 33.665 Atomic orbital electron populations 1.22187 0.93685 1.03523 1.03565 1.21978 0.95939 0.79259 1.05213 1.45549 1.48392 1.13204 1.06840 1.25166 1.03619 0.87422 0.93640 1.70613 1.17911 1.19266 1.10382 1.20600 1.12352 0.95591 0.90526 1.16859 0.76570 0.81167 0.86345 1.90810 1.54966 1.83008 1.13371 1.45762 1.66594 1.12533 1.10797 1.21088 0.94621 0.85713 0.94936 0.88226 1.22260 0.98070 1.00595 1.01890 1.21726 0.94858 0.91895 0.94772 0.93530 1.21800 0.97315 0.98949 1.01661 1.60188 1.45392 1.05504 1.18565 1.21721 1.00393 0.90861 0.95159 1.19814 0.84525 0.83968 0.88981 1.90528 1.58770 1.82530 1.14747 1.41864 1.57840 1.10966 1.09479 1.19764 1.40229 0.90377 0.92378 0.87855 1.25254 0.97597 0.98987 0.96148 1.69626 1.47906 1.27324 1.09536 0.85803 0.78018 0.80412 0.80130 1.19209 1.20784 1.20818 1.22597 1.02734 0.91857 0.93283 0.90222 0.91599 0.91577 0.88336 0.88603 0.77328 0.75792 0.90818 0.92510 0.91699 0.92381 0.91810 0.92755 0.82626 0.89529 0.93816 0.77478 0.91985 0.79606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.28 10.24 37.16 0.38 0.10 16 2 C 0.10 0.17 6.84 -4.04 -0.03 0.14 16 3 N -0.46 -2.58 2.72 -118.37 -0.32 -2.90 16 4 C 0.19 1.22 12.55 -89.91 -1.13 0.09 16 5 N -0.46 -4.67 11.01 -11.03 -0.12 -4.80 16 6 C -0.06 -0.69 6.98 -83.09 -0.58 -1.27 16 7 C 0.60 8.04 7.78 -12.56 -0.10 7.94 16 8 O -0.54 -8.76 16.54 5.26 0.09 -8.67 16 9 N -0.71 -8.44 4.38 -54.91 -0.24 -8.68 16 10 C 0.14 1.84 2.29 -67.93 -0.16 1.68 16 11 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.17 -2.14 9.25 37.16 0.34 -1.80 16 13 C 0.08 1.04 2.28 -67.71 -0.15 0.89 16 14 H 0.05 0.58 7.80 -51.93 -0.41 0.17 16 15 C -0.14 -1.78 9.26 37.16 0.34 -1.44 16 16 N -0.66 -11.14 5.93 -107.99 -0.64 -11.78 16 17 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 18 C 0.44 10.67 7.82 -10.98 -0.09 10.59 16 19 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 20 N -0.56 -14.58 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 29 C 0.03 0.29 11.26 -16.65 -0.19 0.10 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 -0.01 8.14 -51.93 -0.42 -0.44 16 34 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.41 4.38 8.10 -40.82 -0.33 4.05 16 37 H 0.07 0.96 6.21 -51.93 -0.32 0.64 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 43 H 0.35 6.10 5.87 -39.29 -0.23 5.87 16 44 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 45 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 46 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -35.80 403.82 -8.36 -44.16 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.32 Total: 15.25 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.62 Total: 9.82 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.66 Total: -66.93 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.17 Total: -24.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.80 -8.36 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.972 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds